RNA–Protein interactions for RNA: ENST00000543939.5

COPS7A-218, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 3

Gene COPS7A, Length 1,728 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-218ENST00000543939 FRAT1Q92837 279 aaPredicted RBP25.55■■□□□ 1.68
COPS7A-218ENST00000543939 LMO7Q8WWI1 1683 aa25.55■■□□□ 1.68
COPS7A-218ENST00000543939 LTBP4Q8N2S1 1624 aa25.55■■□□□ 1.68
COPS7A-218ENST00000543939 CHL1O00533 1208 aa25.54■■□□□ 1.68
COPS7A-218ENST00000543939 RTF1Q92541 710 aaKnown RBP25.54■■□□□ 1.68
COPS7A-218ENST00000543939 CPDO75976 1380 aa25.54■■□□□ 1.68
COPS7A-218ENST00000543939 ALDH1L2Q3SY69 923 aa25.54■■□□□ 1.68
COPS7A-218ENST00000543939 SMC4Q9NTJ3 1288 aa25.54■■□□□ 1.68
COPS7A-218ENST00000543939 ERBB3P21860 1342 aa25.53■■□□□ 1.68
COPS7A-218ENST00000543939 MAP3K5Q99683 1374 aa25.52■■□□□ 1.68
COPS7A-218ENST00000543939 GNAT3A8MTJ3 354 aa25.52■■□□□ 1.68
COPS7A-218ENST00000543939 VAMP4O75379 141 aa25.52■■□□□ 1.68
COPS7A-218ENST00000543939 TSPYL6Q8N831 410 aa25.51■■□□□ 1.67
COPS7A-218ENST00000543939 ABCA3Q99758 1704 aa25.5■■□□□ 1.67
COPS7A-218ENST00000543939 PANK1Q8TE04 598 aa25.5■■□□□ 1.67
COPS7A-218ENST00000543939 FAM208AQ9UK61 1670 aaKnown RBP25.5■■□□□ 1.67
COPS7A-218ENST00000543939 ZKSCAN2Q63HK3 967 aa25.49■■□□□ 1.67
COPS7A-218ENST00000543939 BRPF1P55201 1214 aaPredicted RBP25.49■■□□□ 1.67
COPS7A-218ENST00000543939 C8orf58Q8NAV2 365 aa25.49■■□□□ 1.67
COPS7A-218ENST00000543939 KIAA0232Q92628 1395 aa25.48■■□□□ 1.67
COPS7A-218ENST00000543939 TWISTNBQ3B726 338 aaPredicted RBP25.48■■□□□ 1.67
COPS7A-218ENST00000543939 TNNQ9UQP3 1299 aa25.48■■□□□ 1.67
COPS7A-218ENST00000543939 RLBP1P12271 317 aa25.46■■□□□ 1.67
COPS7A-218ENST00000543939 IL17REQ8NFR9 667 aa25.46■■□□□ 1.67
COPS7A-218ENST00000543939 COG6Q9Y2V7 657 aa25.46■■□□□ 1.67
COPS7A-218ENST00000543939 KIF16BQ96L93 1317 aa25.46■■□□□ 1.67
COPS7A-218ENST00000543939 CHRNA2Q15822 529 aa25.45■■□□□ 1.66
COPS7A-218ENST00000543939 PLEKHO1Q53GL0 409 aaPredicted RBP25.45■■□□□ 1.66
COPS7A-218ENST00000543939 ELL2O00472 640 aaPredicted RBP25.44■■□□□ 1.66
COPS7A-218ENST00000543939 MS4A1P11836 297 aa25.44■■□□□ 1.66
COPS7A-218ENST00000543939 AMOTQ4VCS5 1084 aa25.44■■□□□ 1.66
COPS7A-218ENST00000543939 ROBO1Q9Y6N7 1651 aa25.44■■□□□ 1.66
COPS7A-218ENST00000543939 NOB1Q9ULX3 412 aaKnown RBP25.43■■□□□ 1.66
COPS7A-218ENST00000543939 MRPL50Q8N5N7 158 aaKnown RBP25.43■■□□□ 1.66
COPS7A-218ENST00000543939 TRIM27P14373 513 aa25.42■■□□□ 1.66
COPS7A-218ENST00000543939 ATF7IPQ6VMQ6 1270 aa25.42■■□□□ 1.66
COPS7A-218ENST00000543939 DZIP1LQ8IYY4 767 aaKnown RBP25.42■■□□□ 1.66
COPS7A-218ENST00000543939 VIRMAQ69YN4 1812 aaKnown RBP25.42■■□□□ 1.66
COPS7A-218ENST00000543939 CEMIPQ8WUJ3 1361 aa25.41■■□□□ 1.66
COPS7A-218ENST00000543939 IPO8O15397 1037 aaKnown RBP25.41■■□□□ 1.66
COPS7A-218ENST00000543939 CLUAP1Q96AJ1 413 aa25.41■■□□□ 1.66
COPS7A-218ENST00000543939 TSPYL4Q9UJ04 414 aa25.41■■□□□ 1.66
COPS7A-218ENST00000543939 AKAP4Q5JQC9 854 aa25.4■■□□□ 1.66
COPS7A-218ENST00000543939 NLRP2Q9NX02 1062 aa25.4■■□□□ 1.66
COPS7A-218ENST00000543939 MIS18AQ9NYP9 233 aa25.4■■□□□ 1.66
COPS7A-218ENST00000543939 AHDC1Q5TGY3 1603 aaPredicted RBP25.4■■□□□ 1.66
COPS7A-218ENST00000543939 AAMPQ13685 434 aa25.4■■□□□ 1.66
COPS7A-218ENST00000543939 ZNF530Q6P9A1 599 aaPredicted RBP25.4■■□□□ 1.66
COPS7A-218ENST00000543939 BABAM1Q9NWV8 329 aa25.4■■□□□ 1.66
COPS7A-218ENST00000543939 HAP1P54257 671 aaPredicted RBP25.39■■□□□ 1.65
COPS7A-218ENST00000543939 KRT24Q2M2I5 525 aa25.39■■□□□ 1.65
COPS7A-218ENST00000543939 FTSJ3Q8IY81 847 aaKnown RBP25.38■■□□□ 1.65
COPS7A-218ENST00000543939 MVPQ14764 893 aaKnown RBP25.37■■□□□ 1.65
COPS7A-218ENST00000543939 TAF7Q15545 349 aaPredicted RBP25.37■■□□□ 1.65
COPS7A-218ENST00000543939 PRDM11Q9NQV5 511 aa25.37■■□□□ 1.65
COPS7A-218ENST00000543939 KDM2BQ8NHM5 1336 aa25.37■■□□□ 1.65
COPS7A-218ENST00000543939 CSB-PGBD3P0DP91 1061 aa25.37■■□□□ 1.65
COPS7A-218ENST00000543939 ARHGAP45Q92619 1136 aa25.37■■□□□ 1.65
COPS7A-218ENST00000543939 TSHZ2Q9NRE2 1034 aa25.37■■□□□ 1.65
COPS7A-218ENST00000543939 PLEKHG2Q9H7P9 1386 aa25.36■■□□□ 1.65
COPS7A-218ENST00000543939 OVOS2A0A0G2JMS6 1433 aa25.35■■□□□ 1.65
COPS7A-218ENST00000543939 ADAMTS7Q9UKP4 1686 aa25.35■■□□□ 1.65
COPS7A-218ENST00000543939 RAPGEF4Q8WZA2 1011 aa25.34■■□□□ 1.65
COPS7A-218ENST00000543939 LGR6Q9HBX8 967 aa25.34■■□□□ 1.65
COPS7A-218ENST00000543939 C1orf141Q5JVX7 400 aa25.34■■□□□ 1.65
COPS7A-218ENST00000543939 MEGF6O75095 1541 aa25.33■■□□□ 1.65
COPS7A-218ENST00000543939 TCERG1O14776 1098 aaKnown RBP25.33■■□□□ 1.65
COPS7A-218ENST00000543939 KDM3BQ7LBC6 1761 aa25.33■■□□□ 1.64
COPS7A-218ENST00000543939 TATP17735 454 aaPredicted RBP25.32■■□□□ 1.64
COPS7A-218ENST00000543939 CENPQQ7L2Z9 268 aaPredicted RBP25.32■■□□□ 1.64
COPS7A-218ENST00000543939 COL5A2P05997 1499 aaPredicted RBP25.32■■□□□ 1.64
COPS7A-218ENST00000543939 PKD1L3Q7Z443 1732 aa25.32■■□□□ 1.64
COPS7A-218ENST00000543939 COL22A1Q8NFW1 1626 aaPredicted RBP25.31■■□□□ 1.64
COPS7A-218ENST00000543939 RNMTO43148 476 aaKnown RBP25.31■■□□□ 1.64
COPS7A-218ENST00000543939 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.31■■□□□ 1.64
COPS7A-218ENST00000543939 WDR17Q8IZU2 1322 aa25.31■■□□□ 1.64
COPS7A-218ENST00000543939 MPRIPQ6WCQ1 1025 aa25.3■■□□□ 1.64
COPS7A-218ENST00000543939 TMEM57Q8N5G2 664 aa25.3■■□□□ 1.64
COPS7A-218ENST00000543939 SIPA1L3O60292 1781 aaPredicted RBP25.29■■□□□ 1.64
COPS7A-218ENST00000543939 DDX19BQ9UMR2 479 aa25.29■■□□□ 1.64
COPS7A-218ENST00000543939 SOS1Q07889 1333 aaPredicted RBP25.28■■□□□ 1.64
COPS7A-218ENST00000543939 SPG7Q9UQ90 795 aa25.28■■□□□ 1.64
COPS7A-218ENST00000543939 SCN11AQ9UI33 1791 aa25.28■■□□□ 1.64
COPS7A-218ENST00000543939 ITPRIPQ8IWB1 547 aa25.27■■□□□ 1.64
COPS7A-218ENST00000543939 TEFQ10587 303 aa25.26■■□□□ 1.63
COPS7A-218ENST00000543939 API5Q9BZZ5 524 aaKnown RBP25.26■■□□□ 1.63
COPS7A-218ENST00000543939 ABCC4O15439 1325 aa25.26■■□□□ 1.63
COPS7A-218ENST00000543939 PARP4Q9UKK3 1724 aaKnown RBP25.26■■□□□ 1.63
COPS7A-218ENST00000543939 CACNA1FO60840 1977 aa25.26■■□□□ 1.63
COPS7A-218ENST00000543939 PCDHB15Q9Y5E8 787 aa25.25■■□□□ 1.63
COPS7A-218ENST00000543939 PHLPP1O60346 1717 aa25.25■■□□□ 1.63
COPS7A-218ENST00000543939 IGHDP01880 384 aa25.24■■□□□ 1.63
COPS7A-218ENST00000543939 COL16A1Q07092 1604 aaPredicted RBP25.23■■□□□ 1.63
COPS7A-218ENST00000543939 PHKG2P15735 406 aa25.23■■□□□ 1.63
COPS7A-218ENST00000543939 TOM1L2Q6ZVM7 507 aa25.23■■□□□ 1.63
COPS7A-218ENST00000543939 COL14A1Q05707 1796 aaKnown RBP25.22■■□□□ 1.63
COPS7A-218ENST00000543939 RGS12O14924 1447 aa25.22■■□□□ 1.63
COPS7A-218ENST00000543939 EIF4A1P60842 406 aaKnown RBP25.21■■□□□ 1.63
COPS7A-218ENST00000543939 CARD10Q9BWT7 1032 aa25.21■■□□□ 1.63
COPS7A-218ENST00000543939 KDM6AO15550 1401 aaPredicted RBP25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms