RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 COL3A1P02461 1466 aaPredicted RBP8.42□□□□□ -1.06
LTBR-212ENST00000543542 RGPD1P0DJD0 1748 aa8.41□□□□□ -1.06
LTBR-212ENST00000543542 MEGF6O75095 1541 aa8.41□□□□□ -1.06
LTBR-212ENST00000543542 PLEKHO1Q53GL0 409 aaPredicted RBP8.41□□□□□ -1.06
LTBR-212ENST00000543542 FAM182BQ5T319 152 aa8.41□□□□□ -1.06
LTBR-212ENST00000543542 AEBP1Q8IUX7 1158 aa8.41□□□□□ -1.06
LTBR-212ENST00000543542 MRS2Q9HD23 443 aa8.41□□□□□ -1.06
LTBR-212ENST00000543542 OVOS2A0A0G2JMS6 1433 aa8.4□□□□□ -1.06
LTBR-212ENST00000543542 DISP2A7MBM2 1401 aa8.4□□□□□ -1.06
LTBR-212ENST00000543542 TNS2Q63HR2 1409 aa8.4□□□□□ -1.06
LTBR-212ENST00000543542 PNNQ9H307 717 aaKnown RBP8.4□□□□□ -1.06
LTBR-212ENST00000543542 PCDH11XQ9BZA7 1347 aa8.39□□□□□ -1.07
LTBR-212ENST00000543542 PCDH11YQ9BZA8 1340 aa8.39□□□□□ -1.07
LTBR-212ENST00000543542 MAPK8IP3Q9UPT6 1336 aa8.39□□□□□ -1.07
LTBR-212ENST00000543542 PRKAR2BP31323 418 aa8.39□□□□□ -1.07
LTBR-212ENST00000543542 SF3B2Q13435 895 aaKnown RBP8.39□□□□□ -1.07
LTBR-212ENST00000543542 AMOTQ4VCS5 1084 aa8.39□□□□□ -1.07
LTBR-212ENST00000543542 C1orf141Q5JVX7 400 aa8.39□□□□□ -1.07
LTBR-212ENST00000543542 ZNF530Q6P9A1 599 aaPredicted RBP8.39□□□□□ -1.07
LTBR-212ENST00000543542 FAM196AQ6ZSG2 479 aa8.39□□□□□ -1.07
LTBR-212ENST00000543542 NCAPD2Q15021 1401 aa8.38□□□□□ -1.07
LTBR-212ENST00000543542 PKD1L3Q7Z443 1732 aa8.38□□□□□ -1.07
LTBR-212ENST00000543542 IFNL2Q8IZJ0 200 aa8.38□□□□□ -1.07
LTBR-212ENST00000543542 MARCH10Q8NA82 808 aaPredicted RBP8.38□□□□□ -1.07
LTBR-212ENST00000543542 SYTL4Q96C24 671 aaPredicted RBP8.38□□□□□ -1.07
LTBR-212ENST00000543542 KAT6BQ8WYB5 2073 aa8.38□□□□□ -1.07
LTBR-212ENST00000543542 SHANK3Q9BYB0 1731 aa8.37□□□□□ -1.07
LTBR-212ENST00000543542 KDRP35968 1356 aa8.37□□□□□ -1.07
LTBR-212ENST00000543542 FCHSD2O94868 740 aa8.37□□□□□ -1.07
LTBR-212ENST00000543542 ACSBG1Q96GR2 724 aa8.37□□□□□ -1.07
LTBR-212ENST00000543542 RSPH6AQ9H0K4 717 aa8.37□□□□□ -1.07
LTBR-212ENST00000543542 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.37□□□□□ -1.07
LTBR-212ENST00000543542 TRIM37O94972 964 aa8.36□□□□□ -1.07
LTBR-212ENST00000543542 HSP90AB1P08238 724 aaKnown RBP8.36□□□□□ -1.07
LTBR-212ENST00000543542 CCDC184Q52MB2 194 aa8.36□□□□□ -1.07
LTBR-212ENST00000543542 CCDC146Q8IYE0 955 aa8.36□□□□□ -1.07
LTBR-212ENST00000543542 FAM9BQ8IZU0 186 aa8.36□□□□□ -1.07
LTBR-212ENST00000543542 GAS2L2Q8NHY3 880 aa8.36□□□□□ -1.07
LTBR-212ENST00000543542 ADAMTS8Q9UP79 889 aa8.36□□□□□ -1.07
LTBR-212ENST00000543542 DOT1LQ8TEK3 1739 aa8.36□□□□□ -1.07
LTBR-212ENST00000543542 CYP27B1O15528 508 aa8.35□□□□□ -1.07
LTBR-212ENST00000543542 PHKG2P15735 406 aa8.35□□□□□ -1.07
LTBR-212ENST00000543542 MTHFSDQ2M296 383 aaKnown RBP8.35□□□□□ -1.07
LTBR-212ENST00000543542 AKAP4Q5JQC9 854 aa8.35□□□□□ -1.07
LTBR-212ENST00000543542 MIER1Q8N108 512 aa8.35□□□□□ -1.07
LTBR-212ENST00000543542 RTF1Q92541 710 aaKnown RBP8.35□□□□□ -1.07
LTBR-212ENST00000543542 PLEKHG2Q9H7P9 1386 aa8.35□□□□□ -1.07
LTBR-212ENST00000543542 SBF2Q86WG5 1849 aa8.34□□□□□ -1.07
LTBR-212ENST00000543542 NEUROD2Q15784 382 aa8.34□□□□□ -1.07
LTBR-212ENST00000543542 MPRIPQ6WCQ1 1025 aa8.34□□□□□ -1.07
LTBR-212ENST00000543542 RUNDC1Q96C34 613 aa8.34□□□□□ -1.07
LTBR-212ENST00000543542 PHACTR3Q96KR7 559 aa8.34□□□□□ -1.07
LTBR-212ENST00000543542 VIRMAQ69YN4 1812 aaKnown RBP8.33□□□□□ -1.08
LTBR-212ENST00000543542 GNAT3A8MTJ3 354 aa8.33□□□□□ -1.08
LTBR-212ENST00000543542 CCER2I3L3R5 266 aa8.33□□□□□ -1.08
LTBR-212ENST00000543542 APBA3O96018 575 aa8.33□□□□□ -1.08
LTBR-212ENST00000543542 BAG6P46379 1132 aa8.33□□□□□ -1.08
LTBR-212ENST00000543542 PRIM1P49642 420 aaKnown RBP8.33□□□□□ -1.08
LTBR-212ENST00000543542 CABP4P57796 275 aa8.33□□□□□ -1.08
LTBR-212ENST00000543542 CCDC125Q86Z20 511 aa8.33□□□□□ -1.08
LTBR-212ENST00000543542 UPF1Q92900 1129 aaKnown RBP eCLIP8.33□□□□□ -1.08
LTBR-212ENST00000543542 DCAF5Q96JK2 942 aa8.33□□□□□ -1.08
LTBR-212ENST00000543542 NHSQ6T4R5 1651 aa8.33□□□□□ -1.08
LTBR-212ENST00000543542 MAP3K5Q99683 1374 aa8.33□□□□□ -1.08
LTBR-212ENST00000543542 ITGB4P16144 1822 aa8.32□□□□□ -1.08
LTBR-212ENST00000543542 SOCS7O14512 581 aa8.32□□□□□ -1.08
LTBR-212ENST00000543542 KCNQ2O43526 872 aa8.32□□□□□ -1.08
LTBR-212ENST00000543542 RIPK4P57078 832 aa8.32□□□□□ -1.08
LTBR-212ENST00000543542 TEFQ10587 303 aa8.32□□□□□ -1.08
LTBR-212ENST00000543542 NFE2L2Q16236 605 aa8.32□□□□□ -1.08
LTBR-212ENST00000543542 PNISRQ8TF01 805 aaKnown RBP8.32□□□□□ -1.08
LTBR-212ENST00000543542 BCL11BQ9C0K0 894 aaPredicted RBP8.32□□□□□ -1.08
LTBR-212ENST00000543542 TMOD3Q9NYL9 352 aa8.32□□□□□ -1.08
LTBR-212ENST00000543542 DLG5Q8TDM6 1919 aa8.32□□□□□ -1.08
LTBR-212ENST00000543542 SCN11AQ9UI33 1791 aa8.32□□□□□ -1.08
LTBR-212ENST00000543542 EP400Q96L91 3159 aa8.31□□□□□ -1.08
LTBR-212ENST00000543542 RNMTO43148 476 aaKnown RBP8.31□□□□□ -1.08
LTBR-212ENST00000543542 LMOD3Q0VAK6 560 aa8.31□□□□□ -1.08
LTBR-212ENST00000543542 NKX1-1Q15270 411 aaPredicted RBP8.31□□□□□ -1.08
LTBR-212ENST00000543542 PLEKHF1Q96S99 279 aa8.31□□□□□ -1.08
LTBR-212ENST00000543542 RRP7AQ9Y3A4 280 aaKnown RBP8.31□□□□□ -1.08
LTBR-212ENST00000543542 TNS1Q9HBL0 1735 aaKnown RBP8.31□□□□□ -1.08
LTBR-212ENST00000543542 TOGARAM1Q9Y4F4 1720 aa8.31□□□□□ -1.08
LTBR-212ENST00000543542 BTAF1O14981 1849 aa8.31□□□□□ -1.08
LTBR-212ENST00000543542 BCL9O00512 1426 aa8.3□□□□□ -1.08
LTBR-212ENST00000543542 SENP3-EIF4A1A0A087X0R7 540 aa8.3□□□□□ -1.08
LTBR-212ENST00000543542 ERVV-2B6SEH9 535 aa8.3□□□□□ -1.08
LTBR-212ENST00000543542 MCM10Q7L590 875 aa8.3□□□□□ -1.08
LTBR-212ENST00000543542 LGR6Q9HBX8 967 aa8.3□□□□□ -1.08
LTBR-212ENST00000543542 KDM6AO15550 1401 aaPredicted RBP8.29□□□□□ -1.08
LTBR-212ENST00000543542 APAF1O14727 1248 aa8.29□□□□□ -1.08
LTBR-212ENST00000543542 HTATSF1O43719 755 aaKnown RBP8.29□□□□□ -1.08
LTBR-212ENST00000543542 TMPOP42166 694 aaKnown RBP8.29□□□□□ -1.08
LTBR-212ENST00000543542 EN1Q05925 392 aaPredicted RBP8.29□□□□□ -1.08
LTBR-212ENST00000543542 DCTN1Q14203 1278 aa8.29□□□□□ -1.08
LTBR-212ENST00000543542 PTF1AQ7RTS3 328 aa8.29□□□□□ -1.08
LTBR-212ENST00000543542 DEFB132Q7Z7B7 95 aa8.29□□□□□ -1.08
LTBR-212ENST00000543542 NFATC2IPQ8NCF5 419 aa8.29□□□□□ -1.08
LTBR-212ENST00000543542 SLC52A2Q9HAB3 445 aa8.29□□□□□ -1.08
LTBR-212ENST00000543542 SALL2Q9Y467 1007 aaPredicted RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms