RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 FBLN1P23142 703 aa25.25■■□□□ 1.63
CLSTN3-214ENST00000542663 PRIM1P49642 420 aaKnown RBP25.25■■□□□ 1.63
CLSTN3-214ENST00000542663 MAP3K19Q56UN5 1328 aa25.25■■□□□ 1.63
CLSTN3-214ENST00000542663 HOXC9P31274 260 aa25.24■■□□□ 1.63
CLSTN3-214ENST00000542663 GPR162Q16538 588 aa25.24■■□□□ 1.63
CLSTN3-214ENST00000542663 SYTL4Q96C24 671 aaPredicted RBP25.23■■□□□ 1.63
CLSTN3-214ENST00000542663 C1QTNF8P60827 252 aa25.22■■□□□ 1.63
CLSTN3-214ENST00000542663 KLHL34Q8N239 644 aa25.22■■□□□ 1.63
CLSTN3-214ENST00000542663 TESK2Q96S53 571 aa25.22■■□□□ 1.63
CLSTN3-214ENST00000542663 TFCP2L1Q9NZI6 479 aa25.22■■□□□ 1.63
CLSTN3-214ENST00000542663 POLD1P28340 1107 aa25.21■■□□□ 1.63
CLSTN3-214ENST00000542663 COG3Q96JB2 828 aa25.21■■□□□ 1.63
CLSTN3-214ENST00000542663 KIF20BQ96Q89 1820 aa25.21■■□□□ 1.63
CLSTN3-214ENST00000542663 NLGN2Q8NFZ4 835 aa25.2■■□□□ 1.62
CLSTN3-214ENST00000542663 ITGB4P16144 1822 aa25.2■■□□□ 1.62
CLSTN3-214ENST00000542663 SENP3-EIF4A1A0A087X0R7 540 aa25.19■■□□□ 1.62
CLSTN3-214ENST00000542663 ZCRB1Q8TBF4 217 aaKnown RBP25.19■■□□□ 1.62
CLSTN3-214ENST00000542663 TONSLQ96HA7 1378 aa25.18■■□□□ 1.62
CLSTN3-214ENST00000542663 AMPHP49418 695 aa25.17■■□□□ 1.62
CLSTN3-214ENST00000542663 TOGARAM1Q9Y4F4 1720 aa25.17■■□□□ 1.62
CLSTN3-214ENST00000542663 RTL1A6NKG5 1358 aa25.17■■□□□ 1.62
CLSTN3-214ENST00000542663 ST20-MTHFSA0A0A6YYL1 179 aa25.15■■□□□ 1.62
CLSTN3-214ENST00000542663 PELP1Q8IZL8 1130 aaKnown RBP25.15■■□□□ 1.62
CLSTN3-214ENST00000542663 CCNL1Q9UK58 526 aaPredicted RBP25.15■■□□□ 1.62
CLSTN3-214ENST00000542663 NBPF6Q5VWK0 638 aa25.14■■□□□ 1.62
CLSTN3-214ENST00000542663 NBPF4Q96M43 638 aa25.14■■□□□ 1.62
CLSTN3-214ENST00000542663 COL23A1Q86Y22 540 aaPredicted RBP25.13■■□□□ 1.61
CLSTN3-214ENST00000542663 RRS1Q15050 365 aaKnown RBP25.12■■□□□ 1.61
CLSTN3-214ENST00000542663 USHBP1Q8N6Y0 703 aa25.12■■□□□ 1.61
CLSTN3-214ENST00000542663 USP47Q96K76 1375 aa25.12■■□□□ 1.61
CLSTN3-214ENST00000542663 UBR3Q6ZT12 1888 aa25.12■■□□□ 1.61
CLSTN3-214ENST00000542663 PKD1L3Q7Z443 1732 aa25.12■■□□□ 1.61
CLSTN3-214ENST00000542663 YBX3P16989 372 aaKnown RBP eCLIP25.11■■□□□ 1.61
CLSTN3-214ENST00000542663 C4BP0C0L5 1744 aa25.09■■□□□ 1.61
CLSTN3-214ENST00000542663 FYB1O15117 783 aa25.09■■□□□ 1.61
CLSTN3-214ENST00000542663 CGNL1Q0VF96 1302 aa25.09■■□□□ 1.61
CLSTN3-214ENST00000542663 GIGYF1O75420 1035 aaPredicted RBP25.08■■□□□ 1.61
CLSTN3-214ENST00000542663 GGNBP2Q9H3C7 697 aa25.08■■□□□ 1.61
CLSTN3-214ENST00000542663 MSH5O43196 834 aa25.07■■□□□ 1.6
CLSTN3-214ENST00000542663 MAP2P11137 1827 aaKnown RBP25.07■■□□□ 1.6
CLSTN3-214ENST00000542663 SMG6Q86US8 1419 aaKnown RBP25.06■■□□□ 1.6
CLSTN3-214ENST00000542663 MSL1Q68DK7 614 aa25.06■■□□□ 1.6
CLSTN3-214ENST00000542663 ANKRD26Q9UPS8 1709 aa25.06■■□□□ 1.6
CLSTN3-214ENST00000542663 RAPGEF4Q8WZA2 1011 aa25.05■■□□□ 1.6
CLSTN3-214ENST00000542663 CEP350Q5VT06 3117 aa25.04■■□□□ 1.6
CLSTN3-214ENST00000542663 INSRP06213 1382 aa25.04■■□□□ 1.6
CLSTN3-214ENST00000542663 HSP90AB2PQ58FF8 381 aa25.03■■□□□ 1.6
CLSTN3-214ENST00000542663 PCDH11XQ9BZA7 1347 aa25.03■■□□□ 1.6
CLSTN3-214ENST00000542663 PCDH11YQ9BZA8 1340 aa25.03■■□□□ 1.6
CLSTN3-214ENST00000542663 PALLDQ8WX93 1383 aa25.03■■□□□ 1.6
CLSTN3-214ENST00000542663 GRIN3BO60391 1043 aa25.02■■□□□ 1.6
CLSTN3-214ENST00000542663 SLC24A1O60721 1099 aa25.02■■□□□ 1.6
CLSTN3-214ENST00000542663 TATP17735 454 aaPredicted RBP25.02■■□□□ 1.6
CLSTN3-214ENST00000542663 FLT4P35916 1363 aa25.01■■□□□ 1.59
CLSTN3-214ENST00000542663 CYP27B1O15528 508 aa25■■□□□ 1.59
CLSTN3-214ENST00000542663 KIF24Q5T7B8 1368 aa24.99■■□□□ 1.59
CLSTN3-214ENST00000542663 ATP10DQ9P241 1426 aa24.98■■□□□ 1.59
CLSTN3-214ENST00000542663 MPRIPQ6WCQ1 1025 aa24.98■■□□□ 1.59
CLSTN3-214ENST00000542663 AMIGO3Q86WK7 504 aa24.98■■□□□ 1.59
CLSTN3-214ENST00000542663 CD2APQ9Y5K6 639 aa24.98■■□□□ 1.59
CLSTN3-214ENST00000542663 NCAPD2Q15021 1401 aa24.97■■□□□ 1.59
CLSTN3-214ENST00000542663 TMF1P82094 1093 aa24.96■■□□□ 1.59
CLSTN3-214ENST00000542663 FLAD1Q8NFF5 587 aa24.96■■□□□ 1.59
CLSTN3-214ENST00000542663 ADCY9O60503 1353 aa24.93■■□□□ 1.58
CLSTN3-214ENST00000542663 EMILIN1Q9Y6C2 1016 aa24.93■■□□□ 1.58
CLSTN3-214ENST00000542663 KIF13BQ9NQT8 1826 aa24.92■■□□□ 1.58
CLSTN3-214ENST00000542663 SMIM5Q71RC9 77 aa24.92■■□□□ 1.58
CLSTN3-214ENST00000542663 KIAA1551Q9HCM1 1747 aa24.92■■□□□ 1.58
CLSTN3-214ENST00000542663 HMGB2P26583 209 aaKnown RBP24.9■■□□□ 1.58
CLSTN3-214ENST00000542663 PIGBQ92521 554 aa24.9■■□□□ 1.58
CLSTN3-214ENST00000542663 SMARCC1Q92922 1105 aaPredicted RBP24.9■■□□□ 1.58
CLSTN3-214ENST00000542663 AK7Q96M32 723 aa24.9■■□□□ 1.58
CLSTN3-214ENST00000542663 CARD14Q9BXL6 1004 aa24.9■■□□□ 1.58
CLSTN3-214ENST00000542663 NKX1-1Q15270 411 aaPredicted RBP24.89■■□□□ 1.58
CLSTN3-214ENST00000542663 N4BP2Q86UW6 1770 aaPredicted RBP24.88■■□□□ 1.57
CLSTN3-214ENST00000542663 NSD3Q9BZ95 1437 aa24.87■■□□□ 1.57
CLSTN3-214ENST00000542663 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.87■■□□□ 1.57
CLSTN3-214ENST00000542663 PHF14O94880 888 aa24.87■■□□□ 1.57
CLSTN3-214ENST00000542663 IGSF1Q8N6C5 1336 aa24.86■■□□□ 1.57
CLSTN3-214ENST00000542663 LINC00116Q8NCU8 138 aa24.86■■□□□ 1.57
CLSTN3-214ENST00000542663 CICQ96RK0 1608 aaPredicted RBP24.86■■□□□ 1.57
CLSTN3-214ENST00000542663 GPBP1L1Q9HC44 474 aaPredicted RBP24.85■■□□□ 1.57
CLSTN3-214ENST00000542663 COL5A3P25940 1745 aaPredicted RBP24.85■■□□□ 1.57
CLSTN3-214ENST00000542663 ZNF831Q5JPB2 1677 aa24.85■■□□□ 1.57
CLSTN3-214ENST00000542663 LOC102724428A0A0B4J2F2 783 aa24.83■■□□□ 1.57
CLSTN3-214ENST00000542663 SSFA2P28290 1259 aa24.83■■□□□ 1.57
CLSTN3-214ENST00000542663 SIK1P57059 783 aa24.83■■□□□ 1.57
CLSTN3-214ENST00000542663 CDCA8Q53HL2 280 aa24.83■■□□□ 1.57
CLSTN3-214ENST00000542663 WWC3Q9ULE0 1092 aa24.83■■□□□ 1.57
CLSTN3-214ENST00000542663 BRCA1P38398 1863 aaKnown RBP24.83■■□□□ 1.56
CLSTN3-214ENST00000542663 SPG7Q9UQ90 795 aa24.82■■□□□ 1.56
CLSTN3-214ENST00000542663 WASHC2AQ641Q2 1341 aa24.82■■□□□ 1.56
CLSTN3-214ENST00000542663 PPM1GO15355 546 aaPredicted RBP24.81■■□□□ 1.56
CLSTN3-214ENST00000542663 ITPK1Q13572 414 aa24.81■■□□□ 1.56
CLSTN3-214ENST00000542663 IFFO2Q5TF58 517 aa24.81■■□□□ 1.56
CLSTN3-214ENST00000542663 ZNF526Q8TF50 670 aaPredicted RBP24.81■■□□□ 1.56
CLSTN3-214ENST00000542663 EYA1Q99502 592 aa24.81■■□□□ 1.56
CLSTN3-214ENST00000542663 ASAP1Q9ULH1 1129 aa24.81■■□□□ 1.56
CLSTN3-214ENST00000542663 C4AP0C0L4 1744 aa24.79■■□□□ 1.56
CLSTN3-214ENST00000542663 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms