RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 XRCC6P12956 609 aaKnown RBP eCLIP17.59■□□□□ 0.41
SMARCA4-207ENST00000541122 STK3Q13188 491 aa17.59■□□□□ 0.41
SMARCA4-207ENST00000541122 ARHGAP29Q52LW3 1261 aa17.59■□□□□ 0.41
SMARCA4-207ENST00000541122 BMP2KLQ5H9B9 411 aa17.59■□□□□ 0.41
SMARCA4-207ENST00000541122 USP25Q9UHP3 1055 aa17.59■□□□□ 0.41
SMARCA4-207ENST00000541122 CRACR2AQ9BSW2 395 aa17.59■□□□□ 0.41
SMARCA4-207ENST00000541122 DDX19AQ9NUU7 478 aaKnown RBP17.59■□□□□ 0.41
SMARCA4-207ENST00000541122 CLIP2Q9UDT6 1046 aa17.59■□□□□ 0.41
SMARCA4-207ENST00000541122 EPB41L2O43491 1005 aaKnown RBP17.58■□□□□ 0.41
SMARCA4-207ENST00000541122 ODF2Q5BJF6 829 aa17.58■□□□□ 0.41
SMARCA4-207ENST00000541122 PRM3Q9NNZ6 103 aa17.58■□□□□ 0.41
SMARCA4-207ENST00000541122 BMS1Q14692 1282 aaKnown RBP17.58■□□□□ 0.4
SMARCA4-207ENST00000541122 GIMAP7Q8NHV1 300 aa17.58■□□□□ 0.4
SMARCA4-207ENST00000541122 DUSP27Q5VZP5 1158 aa17.57■□□□□ 0.4
SMARCA4-207ENST00000541122 SLC12A5Q9H2X9 1139 aa17.57■□□□□ 0.4
SMARCA4-207ENST00000541122 TMPOP42166 694 aaKnown RBP17.57■□□□□ 0.4
SMARCA4-207ENST00000541122 INCENPQ9NQS7 918 aa17.57■□□□□ 0.4
SMARCA4-207ENST00000541122 CFAP100Q494V2 611 aa17.56■□□□□ 0.4
SMARCA4-207ENST00000541122 TMEM132EQ6IEE7 984 aa17.56■□□□□ 0.4
SMARCA4-207ENST00000541122 LRSAM1Q6UWE0 723 aa17.56■□□□□ 0.4
SMARCA4-207ENST00000541122 ARHGAP5Q13017 1502 aa17.56■□□□□ 0.4
SMARCA4-207ENST00000541122 AIMP1Q12904 312 aaKnown RBP17.56■□□□□ 0.4
SMARCA4-207ENST00000541122 HDGFL1Q5TGJ6 251 aa17.56■□□□□ 0.4
SMARCA4-207ENST00000541122 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.56■□□□□ 0.47e-8■■□□□ 12
SMARCA4-207ENST00000541122 CTNNA3Q9UI47 895 aa17.56■□□□□ 0.4
SMARCA4-207ENST00000541122 ADCY5O95622 1261 aa17.56■□□□□ 0.4
SMARCA4-207ENST00000541122 TIGD1Q96MW7 591 aa17.56■□□□□ 0.4
SMARCA4-207ENST00000541122 GTPBP4Q9BZE4 634 aaKnown RBP17.56■□□□□ 0.4
SMARCA4-207ENST00000541122 CASTP20810 708 aaKnown RBP17.55■□□□□ 0.4
SMARCA4-207ENST00000541122 ATP2B1P20020 1258 aa17.55■□□□□ 0.4
SMARCA4-207ENST00000541122 RAB11FIP3O75154 756 aa17.55■□□□□ 0.4
SMARCA4-207ENST00000541122 NFE2L2Q16236 605 aa17.55■□□□□ 0.4
SMARCA4-207ENST00000541122 ZSCAN23Q3MJ62 389 aa17.55■□□□□ 0.4
SMARCA4-207ENST00000541122 RAPGEF4Q8WZA2 1011 aa17.55■□□□□ 0.4
SMARCA4-207ENST00000541122 NOL7Q9UMY1 257 aaKnown RBP17.55■□□□□ 0.4
SMARCA4-207ENST00000541122 GOLGA6L9A6NEM1 432 aa17.55■□□□□ 0.4
SMARCA4-207ENST00000541122 MX1P20591 662 aa17.55■□□□□ 0.4
SMARCA4-207ENST00000541122 CASQ1P31415 396 aa17.55■□□□□ 0.4
SMARCA4-207ENST00000541122 JAKMIP3Q5VZ66 844 aa17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 ZHX1Q9UKY1 873 aaPredicted RBP17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 SKIDA1Q1XH10 827 aa17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 CCDC43Q96MW1 224 aaKnown RBP17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 TROQ12816 1431 aaPredicted RBP17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 ATAD2Q6PL18 1390 aa17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 KIF5CO60282 957 aa17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 KRT222Q8N1A0 295 aa17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 CDK5RAP3Q96JB5 506 aa17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 URI1O94763 535 aaPredicted RBP17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 CCDC158Q5M9N0 1113 aa17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 TRIM34Q9BYJ4 488 aa17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 CCDC171Q6TFL3 1326 aa17.54■□□□□ 0.4
SMARCA4-207ENST00000541122 CWC27Q6UX04 472 aaKnown RBP17.53■□□□□ 0.4
SMARCA4-207ENST00000541122 SKAP1Q86WV1 359 aa17.53■□□□□ 0.4
SMARCA4-207ENST00000541122 CCAR1Q8IX12 1150 aaKnown RBP17.53■□□□□ 0.4
SMARCA4-207ENST00000541122 ZKSCAN5Q9Y2L8 839 aa17.53■□□□□ 0.4
SMARCA4-207ENST00000541122 WASF1Q92558 559 aa17.53■□□□□ 0.4
SMARCA4-207ENST00000541122 DDX11Q96FC9 970 aa17.53■□□□□ 0.4
SMARCA4-207ENST00000541122 MICALCLQ6ZW33 695 aa17.53■□□□□ 0.4
SMARCA4-207ENST00000541122 C16orf45Q96MC5 204 aaPredicted RBP17.53■□□□□ 0.4
SMARCA4-207ENST00000541122 LIMCH1Q9UPQ0 1083 aa17.53■□□□□ 0.4
SMARCA4-207ENST00000541122 AQRO60306 1485 aaKnown RBP eCLIP17.52■□□□□ 0.42e-7■■■■□ 24.9
SMARCA4-207ENST00000541122 CAMK4Q16566 473 aa17.52■□□□□ 0.4
SMARCA4-207ENST00000541122 SNX21Q969T3 373 aa17.52■□□□□ 0.4
SMARCA4-207ENST00000541122 GLRX3O76003 335 aaKnown RBP17.52■□□□□ 0.4
SMARCA4-207ENST00000541122 SLC3A2P08195 630 aaKnown RBP17.52■□□□□ 0.4
SMARCA4-207ENST00000541122 FAM193AP78312 1265 aa17.52■□□□□ 0.4
SMARCA4-207ENST00000541122 SSH1Q8WYL5 1049 aa17.52■□□□□ 0.4
SMARCA4-207ENST00000541122 UBE2HP62256 183 aa17.52■□□□□ 0.39
SMARCA4-207ENST00000541122 PLEKHO1Q53GL0 409 aaPredicted RBP17.52■□□□□ 0.39
SMARCA4-207ENST00000541122 ZSCAN25Q6NSZ9 544 aa17.52■□□□□ 0.39
SMARCA4-207ENST00000541122 CCDC83Q8IWF9 413 aa17.52■□□□□ 0.39
SMARCA4-207ENST00000541122 PEG3Q9GZU2 1588 aa17.52■□□□□ 0.39
SMARCA4-207ENST00000541122 NSD3Q9BZ95 1437 aa17.51■□□□□ 0.39
SMARCA4-207ENST00000541122 SRGAP3O43295 1099 aa17.51■□□□□ 0.39
SMARCA4-207ENST00000541122 KIF1BPQ96EK5 621 aa17.51■□□□□ 0.39
SMARCA4-207ENST00000541122 SYNJ2O15056 1496 aa17.51■□□□□ 0.39
SMARCA4-207ENST00000541122 AACSQ86V21 672 aa17.51■□□□□ 0.39
SMARCA4-207ENST00000541122 TOP1P11387 765 aaKnown RBP17.5■□□□□ 0.39
SMARCA4-207ENST00000541122 ZNF692Q9BU19 519 aaPredicted RBP17.5■□□□□ 0.39
SMARCA4-207ENST00000541122 CEP131Q9UPN4 1083 aa17.5■□□□□ 0.39
SMARCA4-207ENST00000541122 IMMTQ16891 758 aaKnown RBP17.5■□□□□ 0.39
SMARCA4-207ENST00000541122 KIAA1328Q86T90 577 aa17.5■□□□□ 0.39
SMARCA4-207ENST00000541122 RPGRIP1LQ68CZ1 1315 aa17.5■□□□□ 0.39
SMARCA4-207ENST00000541122 TUBB4AP04350 444 aa17.5■□□□□ 0.39
SMARCA4-207ENST00000541122 PSME1Q06323 249 aa17.5■□□□□ 0.39
SMARCA4-207ENST00000541122 LRRFIP2Q9Y608 721 aaKnown RBP17.5■□□□□ 0.39
SMARCA4-207ENST00000541122 STX1AQ16623 288 aa17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 TTC39AQ5SRH9 613 aa17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 PLCD4Q9BRC7 762 aa17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 CCDC141Q6ZP82 1450 aa17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 MAP4K4O95819 1239 aaPredicted RBP17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 GTF2F1P35269 517 aaKnown RBP eCLIP17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 NOLC1Q14978 699 aaKnown RBP eCLIP17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 SULT6B1Q6IMI4 303 aa17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 CCDC150Q8NCX0 1101 aa17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 CCDC94Q9BW85 323 aaPredicted RBP17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 CEP135Q66GS9 1140 aa17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 TBC1D9Q6ZT07 1266 aa17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 NACAP1Q9BZK3 213 aa17.49■□□□□ 0.39
SMARCA4-207ENST00000541122 CCDC69A6NI79 296 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms