RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ZSWIM4Q9H7M6 989 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 ANO10Q9NW15 660 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 TOP1P11387 765 aaKnown RBP10.23□□□□□ -0.77
YBX3-208ENST00000540447 INPP5BP32019 993 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 CCDC83Q8IWF9 413 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 FBF1Q8TES7 1133 aa10.23□□□□□ -0.77
YBX3-208ENST00000540447 CCDC172P0C7W6 258 aa10.22□□□□□ -0.77
YBX3-208ENST00000540447 VPS53Q5VIR6 699 aa10.22□□□□□ -0.77
YBX3-208ENST00000540447 GCC1Q96CN9 775 aa10.22□□□□□ -0.77
YBX3-208ENST00000540447 SKAP1Q86WV1 359 aa10.22□□□□□ -0.77
YBX3-208ENST00000540447 FEZ2Q9UHY8 353 aaPredicted RBP10.22□□□□□ -0.77
YBX3-208ENST00000540447 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.22□□□□□ -0.77
YBX3-208ENST00000540447 CCDC50Q8IVM0 306 aa10.22□□□□□ -0.77
YBX3-208ENST00000540447 TAF4BQ92750 862 aa10.22□□□□□ -0.77
YBX3-208ENST00000540447 GCOM1H8Y6P7 765 aaPredicted RBP10.22□□□□□ -0.77
YBX3-208ENST00000540447 MYZAPP0CAP1 466 aa10.22□□□□□ -0.77
YBX3-208ENST00000540447 IMMTQ16891 758 aaKnown RBP10.22□□□□□ -0.77
YBX3-208ENST00000540447 JMYQ8N9B5 988 aa10.22□□□□□ -0.77
YBX3-208ENST00000540447 KIF3BO15066 747 aa10.22□□□□□ -0.77
YBX3-208ENST00000540447 SSBP05455 408 aaKnown RBP eCLIP10.22□□□□□ -0.77
YBX3-208ENST00000540447 DNAJC21Q5F1R6 531 aaKnown RBP10.22□□□□□ -0.77
YBX3-208ENST00000540447 FAM184BQ9ULE4 1060 aa10.22□□□□□ -0.77
YBX3-208ENST00000540447 C6orf163Q5TEZ5 329 aa10.21□□□□□ -0.77
YBX3-208ENST00000540447 MAATS1Q7Z4T9 603 aa10.21□□□□□ -0.77
YBX3-208ENST00000540447 ZNF853P0CG23 659 aa10.21□□□□□ -0.77
YBX3-208ENST00000540447 GNG11P61952 73 aa10.21□□□□□ -0.77
YBX3-208ENST00000540447 TRDNQ13061 729 aa10.21□□□□□ -0.77
YBX3-208ENST00000540447 DBN1Q16643 649 aa10.21□□□□□ -0.77
YBX3-208ENST00000540447 TEX2Q8IWB9 1127 aa10.21□□□□□ -0.77
YBX3-208ENST00000540447 LRRFIP1Q32MZ4 808 aaKnown RBP10.21□□□□□ -0.77
YBX3-208ENST00000540447 NFXL1Q6ZNB6 911 aa10.21□□□□□ -0.77
YBX3-208ENST00000540447 PABPN1Q86U42 306 aaKnown RBP eCLIP10.21□□□□□ -0.773e-7■■□□□ 12.6
YBX3-208ENST00000540447 SOX12O15370 315 aa10.21□□□□□ -0.78
YBX3-208ENST00000540447 ZSCAN26Q16670 478 aa10.21□□□□□ -0.78
YBX3-208ENST00000540447 SPECC1Q5M775 1068 aa10.21□□□□□ -0.78
YBX3-208ENST00000540447 LMNTD2Q8IXW0 634 aa10.21□□□□□ -0.78
YBX3-208ENST00000540447 CCDC12Q8WUD4 166 aaPredicted RBP10.21□□□□□ -0.78
YBX3-208ENST00000540447 OPA1O60313 960 aa10.21□□□□□ -0.78
YBX3-208ENST00000540447 USP47Q96K76 1375 aa10.21□□□□□ -0.78
YBX3-208ENST00000540447 RIOK3O14730 519 aaKnown RBP10.2□□□□□ -0.78
YBX3-208ENST00000540447 BRMS1Q9HCU9 246 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 BUB1BO60566 1050 aaPredicted RBP10.2□□□□□ -0.78
YBX3-208ENST00000540447 CASTP20810 708 aaKnown RBP10.2□□□□□ -0.78
YBX3-208ENST00000540447 RPUSD2Q8IZ73 545 aaKnown RBP10.2□□□□□ -0.78
YBX3-208ENST00000540447 CCDC150Q8NCX0 1101 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 HCLS1P14317 486 aaPredicted RBP10.2□□□□□ -0.78
YBX3-208ENST00000540447 B4GALNT4Q76KP1 1039 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 CCDC186Q7Z3E2 898 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 TMC6Q7Z403 805 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 WRNQ14191 1432 aaPredicted RBP eCLIP10.2□□□□□ -0.78
YBX3-208ENST00000540447 CFAP57Q96MR6 1250 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 DNAI1Q9UI46 699 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 TUBB4AP04350 444 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 PAFAH1B1P43034 410 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 CNTROBQ8N137 903 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 ANKS4BQ8N8V4 417 aa10.2□□□□□ -0.78
YBX3-208ENST00000540447 VGFO15240 615 aaPredicted RBP10.19□□□□□ -0.78
YBX3-208ENST00000540447 PHACTR2O75167 634 aa10.19□□□□□ -0.78
YBX3-208ENST00000540447 SKILP12757 684 aa10.19□□□□□ -0.78
YBX3-208ENST00000540447 GOLGA1Q92805 767 aa10.19□□□□□ -0.78
YBX3-208ENST00000540447 ERO1AQ96HE7 468 aa10.19□□□□□ -0.78
YBX3-208ENST00000540447 PEX19P40855 299 aa10.19□□□□□ -0.78
YBX3-208ENST00000540447 CYP46A1Q9Y6A2 500 aa10.19□□□□□ -0.78
YBX3-208ENST00000540447 UBE4AQ14139 1066 aa10.19□□□□□ -0.78
YBX3-208ENST00000540447 SYCP1Q15431 976 aa10.19□□□□□ -0.78
YBX3-208ENST00000540447 WHAMMP3Q1A5X7 153 aa10.19□□□□□ -0.78
YBX3-208ENST00000540447 NAP1L3Q99457 506 aaPredicted RBP10.19□□□□□ -0.78
YBX3-208ENST00000540447 NSRP1Q9H0G5 558 aaKnown RBP10.19□□□□□ -0.78
YBX3-208ENST00000540447 RLBP1P12271 317 aa10.18□□□□□ -0.78
YBX3-208ENST00000540447 PRIM1P49642 420 aaKnown RBP10.18□□□□□ -0.78
YBX3-208ENST00000540447 CKAP2LQ8IYA6 745 aa10.18□□□□□ -0.78
YBX3-208ENST00000540447 BCAR3O75815 825 aa10.18□□□□□ -0.78
YBX3-208ENST00000540447 MKRN1Q9UHC7 482 aaKnown RBP10.18□□□□□ -0.78
YBX3-208ENST00000540447 PPP6R1Q9UPN7 881 aa10.18□□□□□ -0.78
YBX3-208ENST00000540447 LUC7L2Q9Y383 392 aaKnown RBP10.18□□□□□ -0.78
YBX3-208ENST00000540447 PCK1P35558 622 aa10.18□□□□□ -0.78
YBX3-208ENST00000540447 RUNDC1Q96C34 613 aa10.18□□□□□ -0.78
YBX3-208ENST00000540447 ANKRD1Q15327 319 aa10.18□□□□□ -0.78
YBX3-208ENST00000540447 FAM76AQ8TAV0 307 aa10.18□□□□□ -0.78
YBX3-208ENST00000540447 SAFB2Q14151 953 aaKnown RBP eCLIP10.17□□□□□ -0.78
YBX3-208ENST00000540447 DDX46Q7L014 1031 aaKnown RBP10.17□□□□□ -0.78
YBX3-208ENST00000540447 HDXQ7Z353 690 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.17□□□□□ -0.78
YBX3-208ENST00000540447 CHD1LQ86WJ1 897 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 GOPCQ9HD26 462 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 CTAGE15A4D2H0 777 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 CTAGE8P0CG41 777 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 HLTFQ14527 1009 aaKnown RBP eCLIP10.17□□□□□ -0.78
YBX3-208ENST00000540447 CTAGE6Q86UF2 777 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 CTAGE4Q8IX94 777 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 MICAL1Q8TDZ2 1067 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 ZBTB9Q96C00 473 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 PIK3R5Q8WYR1 880 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 ZSCAN31Q96LW9 406 aaPredicted RBP10.17□□□□□ -0.78
YBX3-208ENST00000540447 NAA15Q9BXJ9 866 aaKnown RBP10.17□□□□□ -0.78
YBX3-208ENST00000540447 BCL2L12Q9HB09 334 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 SPA17Q15506 151 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 VEZTQ9HBM0 779 aa10.17□□□□□ -0.78
YBX3-208ENST00000540447 CTAGE5O15320 804 aa10.16□□□□□ -0.78
YBX3-208ENST00000540447 ZEB2O60315 1214 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms