RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 RUNDC1Q96C34 613 aa25.09■■□□□ 1.61
TNFRSF1A-213ENST00000540022 YTHDC1Q96MU7 727 aaKnown RBP25.07■■□□□ 1.6
TNFRSF1A-213ENST00000540022 CARD10Q9BWT7 1032 aa25.07■■□□□ 1.6
TNFRSF1A-213ENST00000540022 PNNQ9H307 717 aaKnown RBP25.07■■□□□ 1.6
TNFRSF1A-213ENST00000540022 RGPD2P0DJD1 1756 aa25.07■■□□□ 1.6
TNFRSF1A-213ENST00000540022 SENP3-EIF4A1A0A087X0R7 540 aa25.07■■□□□ 1.6
TNFRSF1A-213ENST00000540022 PHACTR3Q96KR7 559 aa25.06■■□□□ 1.6
TNFRSF1A-213ENST00000540022 FAM208AQ9UK61 1670 aaKnown RBP25.06■■□□□ 1.6
TNFRSF1A-213ENST00000540022 TCP11L2Q8N4U5 519 aa25.05■■□□□ 1.6
TNFRSF1A-213ENST00000540022 APAF1O14727 1248 aa25.04■■□□□ 1.6
TNFRSF1A-213ENST00000540022 CCDC125Q86Z20 511 aa25.04■■□□□ 1.6
TNFRSF1A-213ENST00000540022 MAPK8IP3Q9UPT6 1336 aa25.03■■□□□ 1.6
TNFRSF1A-213ENST00000540022 HNRNPUQ00839 825 aaKnown RBP eCLIP25.02■■□□□ 1.6
TNFRSF1A-213ENST00000540022 BARGINQ6ZT62 677 aa25.02■■□□□ 1.6
TNFRSF1A-213ENST00000540022 NEFMP07197 916 aa25■■□□□ 1.59
TNFRSF1A-213ENST00000540022 WNK3Q9BYP7 1800 aa24.99■■□□□ 1.59
TNFRSF1A-213ENST00000540022 PARP4Q9UKK3 1724 aaKnown RBP24.99■■□□□ 1.59
TNFRSF1A-213ENST00000540022 RAPGEF4Q8WZA2 1011 aa24.99■■□□□ 1.59
TNFRSF1A-213ENST00000540022 THRAP3Q9Y2W1 955 aaKnown RBP24.99■■□□□ 1.59
TNFRSF1A-213ENST00000540022 MEGF6O75095 1541 aa24.98■■□□□ 1.59
TNFRSF1A-213ENST00000540022 RRP7AQ9Y3A4 280 aaKnown RBP24.98■■□□□ 1.59
TNFRSF1A-213ENST00000540022 DISP2A7MBM2 1401 aa24.98■■□□□ 1.59
TNFRSF1A-213ENST00000540022 FAM182BQ5T319 152 aa24.97■■□□□ 1.59
TNFRSF1A-213ENST00000540022 TATP17735 454 aaPredicted RBP24.96■■□□□ 1.59
TNFRSF1A-213ENST00000540022 TMPOP42166 694 aaKnown RBP24.96■■□□□ 1.59
TNFRSF1A-213ENST00000540022 SALL2Q9Y467 1007 aaPredicted RBP24.96■■□□□ 1.59
TNFRSF1A-213ENST00000540022 NEUROD2Q15784 382 aa24.96■■□□□ 1.59
TNFRSF1A-213ENST00000540022 MTHFSDQ2M296 383 aaKnown RBP24.96■■□□□ 1.59
TNFRSF1A-213ENST00000540022 IL2RBP14784 551 aa24.95■■□□□ 1.58
TNFRSF1A-213ENST00000540022 NFE2L2Q16236 605 aa24.95■■□□□ 1.58
TNFRSF1A-213ENST00000540022 PLEKHO1Q53GL0 409 aaPredicted RBP24.93■■□□□ 1.58
TNFRSF1A-213ENST00000540022 OVOS2A0A0G2JMS6 1433 aa24.93■■□□□ 1.58
TNFRSF1A-213ENST00000540022 TNS1Q9HBL0 1735 aaKnown RBP24.92■■□□□ 1.58
TNFRSF1A-213ENST00000540022 RIPK4P57078 832 aa24.91■■□□□ 1.58
TNFRSF1A-213ENST00000540022 AMOTQ4VCS5 1084 aa24.91■■□□□ 1.58
TNFRSF1A-213ENST00000540022 DEFB132Q7Z7B7 95 aa24.91■■□□□ 1.58
TNFRSF1A-213ENST00000540022 GAS2L2Q8NHY3 880 aa24.91■■□□□ 1.58
TNFRSF1A-213ENST00000540022 LRRC37A3O60309 1634 aa24.91■■□□□ 1.58
TNFRSF1A-213ENST00000540022 PLEKHG2Q9H7P9 1386 aa24.91■■□□□ 1.58
TNFRSF1A-213ENST00000540022 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.9■■□□□ 1.58
TNFRSF1A-213ENST00000540022 SF3B2Q13435 895 aaKnown RBP24.89■■□□□ 1.57
TNFRSF1A-213ENST00000540022 NCBP3Q53F19 620 aaKnown RBP24.89■■□□□ 1.57
TNFRSF1A-213ENST00000540022 NGEFQ8N5V2 710 aa24.89■■□□□ 1.57
TNFRSF1A-213ENST00000540022 ZBED9Q6R2W3 1325 aa24.88■■□□□ 1.57
TNFRSF1A-213ENST00000540022 ZNF530Q6P9A1 599 aaPredicted RBP24.88■■□□□ 1.57
TNFRSF1A-213ENST00000540022 TRIM35Q9UPQ4 493 aa24.88■■□□□ 1.57
TNFRSF1A-213ENST00000540022 SPG7Q9UQ90 795 aa24.88■■□□□ 1.57
TNFRSF1A-213ENST00000540022 PDE3BQ13370 1112 aa24.87■■□□□ 1.57
TNFRSF1A-213ENST00000540022 ZCRB1Q8TBF4 217 aaKnown RBP24.87■■□□□ 1.57
TNFRSF1A-213ENST00000540022 DDB1Q16531 1140 aa24.86■■□□□ 1.57
TNFRSF1A-213ENST00000540022 CCDC27Q2M243 656 aa24.86■■□□□ 1.57
TNFRSF1A-213ENST00000540022 CDCA7Q9BWT1 371 aaPredicted RBP24.86■■□□□ 1.57
TNFRSF1A-213ENST00000540022 FAM196AQ6ZSG2 479 aa24.86■■□□□ 1.57
TNFRSF1A-213ENST00000540022 WWC1Q8IX03 1113 aa24.86■■□□□ 1.57
TNFRSF1A-213ENST00000540022 SBF2Q86WG5 1849 aa24.85■■□□□ 1.57
TNFRSF1A-213ENST00000540022 ZNF521Q96K83 1311 aa24.85■■□□□ 1.57
TNFRSF1A-213ENST00000540022 EXOC5O00471 708 aa24.84■■□□□ 1.57
TNFRSF1A-213ENST00000540022 MAP3K5Q99683 1374 aa24.83■■□□□ 1.57
TNFRSF1A-213ENST00000540022 GNAT3A8MTJ3 354 aa24.83■■□□□ 1.57
TNFRSF1A-213ENST00000540022 CYP27B1O15528 508 aa24.83■■□□□ 1.57
TNFRSF1A-213ENST00000540022 AKAP4Q5JQC9 854 aa24.83■■□□□ 1.57
TNFRSF1A-213ENST00000540022 TNS2Q63HR2 1409 aa24.83■■□□□ 1.57
TNFRSF1A-213ENST00000540022 PKD1L3Q7Z443 1732 aa24.82■■□□□ 1.56
TNFRSF1A-213ENST00000540022 DCTN1Q14203 1278 aa24.82■■□□□ 1.56
TNFRSF1A-213ENST00000540022 C1orf141Q5JVX7 400 aa24.82■■□□□ 1.56
TNFRSF1A-213ENST00000540022 MARCH10Q8NA82 808 aaPredicted RBP24.82■■□□□ 1.56
TNFRSF1A-213ENST00000540022 PHKG2P15735 406 aa24.81■■□□□ 1.56
TNFRSF1A-213ENST00000540022 BAG6P46379 1132 aa24.81■■□□□ 1.56
TNFRSF1A-213ENST00000540022 LMOD3Q0VAK6 560 aa24.81■■□□□ 1.56
TNFRSF1A-213ENST00000540022 TRIM37O94972 964 aa24.81■■□□□ 1.56
TNFRSF1A-213ENST00000540022 IFNL2Q8IZJ0 200 aa24.81■■□□□ 1.56
TNFRSF1A-213ENST00000540022 DDX54Q8TDD1 881 aaKnown RBP24.81■■□□□ 1.56
TNFRSF1A-213ENST00000540022 THUMPD2Q9BTF0 503 aaKnown RBP24.81■■□□□ 1.56
TNFRSF1A-213ENST00000540022 PCDH11XQ9BZA7 1347 aa24.8■■□□□ 1.56
TNFRSF1A-213ENST00000540022 PCDH11YQ9BZA8 1340 aa24.8■■□□□ 1.56
TNFRSF1A-213ENST00000540022 HTATSF1O43719 755 aaKnown RBP24.8■■□□□ 1.56
TNFRSF1A-213ENST00000540022 MCM10Q7L590 875 aa24.8■■□□□ 1.56
TNFRSF1A-213ENST00000540022 RTF1Q92541 710 aaKnown RBP24.79■■□□□ 1.56
TNFRSF1A-213ENST00000540022 IL17REQ8NFR9 667 aa24.78■■□□□ 1.56
TNFRSF1A-213ENST00000540022 SRCAPQ6ZRS2 3230 aa24.78■■□□□ 1.56
TNFRSF1A-213ENST00000540022 SHANK3Q9BYB0 1731 aa24.78■■□□□ 1.56
TNFRSF1A-213ENST00000540022 EN1Q05925 392 aaPredicted RBP24.77■■□□□ 1.56
TNFRSF1A-213ENST00000540022 MPRIPQ6WCQ1 1025 aa24.77■■□□□ 1.56
TNFRSF1A-213ENST00000540022 LGR6Q9HBX8 967 aa24.76■■□□□ 1.55
TNFRSF1A-213ENST00000540022 WDR63Q8IWG1 891 aa24.76■■□□□ 1.55
TNFRSF1A-213ENST00000540022 RNMTO43148 476 aaKnown RBP24.75■■□□□ 1.55
TNFRSF1A-213ENST00000540022 GOLGA2Q08379 1002 aa24.75■■□□□ 1.55
TNFRSF1A-213ENST00000540022 CDCA7LQ96GN5 454 aa24.75■■□□□ 1.55
TNFRSF1A-213ENST00000540022 DLG5Q8TDM6 1919 aa24.75■■□□□ 1.55
TNFRSF1A-213ENST00000540022 NKX1-1Q15270 411 aaPredicted RBP24.74■■□□□ 1.55
TNFRSF1A-213ENST00000540022 SPINK5Q9NQ38 1064 aaPredicted RBP24.74■■□□□ 1.55
TNFRSF1A-213ENST00000540022 KDM6AO15550 1401 aaPredicted RBP24.73■■□□□ 1.55
TNFRSF1A-213ENST00000540022 HSP90AB1P08238 724 aaKnown RBP24.73■■□□□ 1.55
TNFRSF1A-213ENST00000540022 CEMIPQ8WUJ3 1361 aa24.73■■□□□ 1.55
TNFRSF1A-213ENST00000540022 DCAF5Q96JK2 942 aa24.72■■□□□ 1.55
TNFRSF1A-213ENST00000540022 KAT6BQ8WYB5 2073 aa24.72■■□□□ 1.55
TNFRSF1A-213ENST00000540022 RREB1Q92766 1687 aa24.71■■□□□ 1.55
TNFRSF1A-213ENST00000540022 APBA3O96018 575 aa24.71■■□□□ 1.55
TNFRSF1A-213ENST00000540022 EZH2Q15910 746 aaKnown RBP24.71■■□□□ 1.55
TNFRSF1A-213ENST00000540022 BCL9O00512 1426 aa24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms