RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 SSH1Q8WYL5 1049 aa12.92□□□□□ -0.34
RTN3-208ENST00000537981 USP26Q9BXU7 913 aa12.92□□□□□ -0.34
RTN3-208ENST00000537981 ZBTB40Q9NUA8 1239 aa12.92□□□□□ -0.34
RTN3-208ENST00000537981 RSPH14Q9UHP6 348 aa12.92□□□□□ -0.34
RTN3-208ENST00000537981 MYO5CQ9NQX4 1742 aa12.92□□□□□ -0.34
RTN3-208ENST00000537981 NOL8Q76FK4 1167 aaKnown RBP12.92□□□□□ -0.34
RTN3-208ENST00000537981 NOB1Q9ULX3 412 aaKnown RBP12.92□□□□□ -0.34
RTN3-208ENST00000537981 TRIM66O15016 1216 aa12.91□□□□□ -0.34
RTN3-208ENST00000537981 CDCA8Q53HL2 280 aa12.91□□□□□ -0.34
RTN3-208ENST00000537981 KRT222Q8N1A0 295 aa12.91□□□□□ -0.34
RTN3-208ENST00000537981 CALCOCO1Q9P1Z2 691 aa12.91□□□□□ -0.34
RTN3-208ENST00000537981 CD109Q6YHK3 1445 aa12.91□□□□□ -0.34
RTN3-208ENST00000537981 SHPRHQ149N8 1683 aa12.91□□□□□ -0.34
RTN3-208ENST00000537981 MKRN3Q13064 507 aaKnown RBP12.91□□□□□ -0.34
RTN3-208ENST00000537981 PSMD1Q99460 953 aa12.91□□□□□ -0.34
RTN3-208ENST00000537981 LCMT1Q9UIC8 334 aa12.91□□□□□ -0.34
RTN3-208ENST00000537981 DTNBO60941 627 aa12.9□□□□□ -0.34
RTN3-208ENST00000537981 PTGS1P23219 599 aa12.9□□□□□ -0.34
RTN3-208ENST00000537981 SIRT1Q96EB6 747 aa12.9□□□□□ -0.34
RTN3-208ENST00000537981 ZNF446Q9NWS9 450 aa12.9□□□□□ -0.34
RTN3-208ENST00000537981 HDAC5Q9UQL6 1122 aa12.9□□□□□ -0.34
RTN3-208ENST00000537981 NPHP1O15259 732 aa12.9□□□□□ -0.34
RTN3-208ENST00000537981 RTF1Q92541 710 aaKnown RBP12.9□□□□□ -0.34
RTN3-208ENST00000537981 CROCC2H7BZ55 1655 aa12.89□□□□□ -0.35
RTN3-208ENST00000537981 EXOSC9Q06265 439 aaKnown RBP12.89□□□□□ -0.35
RTN3-208ENST00000537981 RABEP1Q15276 862 aa12.89□□□□□ -0.35
RTN3-208ENST00000537981 FBXO38Q6PIJ6 1188 aa12.89□□□□□ -0.35
RTN3-208ENST00000537981 NEK11Q8NG66 645 aa12.89□□□□□ -0.35
RTN3-208ENST00000537981 GTF3C6Q969F1 213 aa12.89□□□□□ -0.35
RTN3-208ENST00000537981 CARD14Q9BXL6 1004 aa12.89□□□□□ -0.35
RTN3-208ENST00000537981 CFDP1Q9UEE9 299 aaPredicted RBP12.89□□□□□ -0.35
RTN3-208ENST00000537981 KDM4AO75164 1064 aa12.88□□□□□ -0.35
RTN3-208ENST00000537981 MBD3O95983 291 aa12.88□□□□□ -0.35
RTN3-208ENST00000537981 DDX19BQ9UMR2 479 aa12.88□□□□□ -0.35
RTN3-208ENST00000537981 IQSEC2Q5JU85 1478 aa12.88□□□□□ -0.35
RTN3-208ENST00000537981 NOP2P46087 812 aaKnown RBP12.88□□□□□ -0.35
RTN3-208ENST00000537981 PPIP5K1Q6PFW1 1433 aa12.88□□□□□ -0.35
RTN3-208ENST00000537981 ATF7IPQ6VMQ6 1270 aa12.88□□□□□ -0.35
RTN3-208ENST00000537981 USP48Q86UV5 1035 aa12.88□□□□□ -0.35
RTN3-208ENST00000537981 ZC3H15Q8WU90 426 aaKnown RBP12.88□□□□□ -0.35
RTN3-208ENST00000537981 NRBP1Q9UHY1 535 aa12.88□□□□□ -0.35
RTN3-208ENST00000537981 ERBB3P21860 1342 aa12.87□□□□□ -0.35
RTN3-208ENST00000537981 U2SURPO15042 1029 aaKnown RBP12.87□□□□□ -0.35
RTN3-208ENST00000537981 CYP2C19P33261 490 aa12.87□□□□□ -0.35
RTN3-208ENST00000537981 FAM53CQ9NYF3 392 aa12.87□□□□□ -0.35
RTN3-208ENST00000537981 C16orf71Q8IYS4 520 aaPredicted RBP12.87□□□□□ -0.35
RTN3-208ENST00000537981 TRAIPQ9BWF2 469 aa12.87□□□□□ -0.35
RTN3-208ENST00000537981 GIMAP6Q6P9H5 292 aa12.86□□□□□ -0.35
RTN3-208ENST00000537981 ZNF526Q8TF50 670 aaPredicted RBP12.86□□□□□ -0.35
RTN3-208ENST00000537981 ADGRL2O95490 1459 aa12.86□□□□□ -0.35
RTN3-208ENST00000537981 PLA2R1Q13018 1463 aa12.86□□□□□ -0.35
RTN3-208ENST00000537981 TROQ12816 1431 aaPredicted RBP12.86□□□□□ -0.35
RTN3-208ENST00000537981 ANKRD36BQ8N2N9 1353 aa12.86□□□□□ -0.35
RTN3-208ENST00000537981 ELF2Q15723 593 aa12.86□□□□□ -0.35
RTN3-208ENST00000537981 SIRT2Q8IXJ6 389 aa12.86□□□□□ -0.35
RTN3-208ENST00000537981 OTUD7AQ8TE49 926 aaPredicted RBP12.86□□□□□ -0.35
RTN3-208ENST00000537981 TOMM22Q9NS69 142 aa12.86□□□□□ -0.35
RTN3-208ENST00000537981 ZNF215Q9UL58 517 aaPredicted RBP12.86□□□□□ -0.35
RTN3-208ENST00000537981 SYNMO15061 1565 aa12.86□□□□□ -0.35
RTN3-208ENST00000537981 DHX16O60231 1041 aaKnown RBP12.85□□□□□ -0.35
RTN3-208ENST00000537981 CDC45O75419 566 aa12.85□□□□□ -0.35
RTN3-208ENST00000537981 TNNT1P13805 278 aa12.85□□□□□ -0.35
RTN3-208ENST00000537981 MMP14P50281 582 aa12.85□□□□□ -0.35
RTN3-208ENST00000537981 SYT10Q6XYQ8 523 aa12.85□□□□□ -0.35
RTN3-208ENST00000537981 C10orf67Q8IYJ2 551 aa12.85□□□□□ -0.35
RTN3-208ENST00000537981 LAMC1P11047 1609 aa12.85□□□□□ -0.35
RTN3-208ENST00000537981 CLSTN1O94985 981 aa12.85□□□□□ -0.35
RTN3-208ENST00000537981 BRD1O95696 1058 aa12.85□□□□□ -0.35
RTN3-208ENST00000537981 TNNT3P45378 269 aaPredicted RBP12.85□□□□□ -0.35
RTN3-208ENST00000537981 RUNDC1Q96C34 613 aa12.85□□□□□ -0.35
RTN3-208ENST00000537981 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.84□□□□□ -0.351e-77■■□□□ 12.1
RTN3-208ENST00000537981 SMTNL1A8MU46 457 aa12.84□□□□□ -0.35
RTN3-208ENST00000537981 PRDM16Q9HAZ2 1276 aa12.84□□□□□ -0.35
RTN3-208ENST00000537981 IFT57Q9NWB7 429 aa12.84□□□□□ -0.35
RTN3-208ENST00000537981 POLKQ9UBT6 870 aa12.84□□□□□ -0.35
RTN3-208ENST00000537981 TTC37Q6PGP7 1564 aa12.84□□□□□ -0.35
RTN3-208ENST00000537981 USP27XA6NNY8 438 aa12.84□□□□□ -0.35
RTN3-208ENST00000537981 RAPGEF3O95398 923 aa12.84□□□□□ -0.35
RTN3-208ENST00000537981 LRRN4CLQ8ND94 238 aa12.84□□□□□ -0.35
RTN3-208ENST00000537981 GPBP1L1Q9HC44 474 aaPredicted RBP12.84□□□□□ -0.35
RTN3-208ENST00000537981 EXOC6BQ9Y2D4 811 aa12.84□□□□□ -0.35
RTN3-208ENST00000537981 ATAD2Q6PL18 1390 aa12.83□□□□□ -0.35
RTN3-208ENST00000537981 UVSSAQ2YD98 709 aa12.83□□□□□ -0.36
RTN3-208ENST00000537981 TMX3Q96JJ7 454 aa12.83□□□□□ -0.36
RTN3-208ENST00000537981 NOL10Q9BSC4 688 aaKnown RBP12.83□□□□□ -0.36
RTN3-208ENST00000537981 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.83□□□□□ -0.36
RTN3-208ENST00000537981 ATF5Q9Y2D1 282 aaPredicted RBP12.83□□□□□ -0.36
RTN3-208ENST00000537981 SPAG9O60271 1321 aaKnown RBP12.83□□□□□ -0.36
RTN3-208ENST00000537981 GLI2P10070 1586 aa12.83□□□□□ -0.36
RTN3-208ENST00000537981 WDR63Q8IWG1 891 aa12.83□□□□□ -0.36
RTN3-208ENST00000537981 GEMIN8Q9NWZ8 242 aaKnown RBP12.83□□□□□ -0.36
RTN3-208ENST00000537981 ST5P78524 1137 aa12.82□□□□□ -0.36
RTN3-208ENST00000537981 CCDC186Q7Z3E2 898 aa12.82□□□□□ -0.36
RTN3-208ENST00000537981 CCDC112Q8NEF3 446 aa12.82□□□□□ -0.36
RTN3-208ENST00000537981 CNPY2Q9Y2B0 182 aa12.82□□□□□ -0.36
RTN3-208ENST00000537981 MAP3K4Q9Y6R4 1608 aa12.82□□□□□ -0.36
RTN3-208ENST00000537981 CNPY4Q8N129 248 aa12.82□□□□□ -0.36
RTN3-208ENST00000537981 ZNF397Q8NF99 534 aaPredicted RBP12.82□□□□□ -0.36
RTN3-208ENST00000537981 CCDC141Q6ZP82 1450 aa12.81□□□□□ -0.36
RTN3-208ENST00000537981 TSGA10IPQ3SY00 556 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms