RNA–Protein interactions for RNA: ENST00000536172.5

LMO3-213, Transcript of LIM domain only 3, humanhuman

TSL 3

Gene LMO3, Length 587 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-213ENST00000536172 SHANK3Q9BYB0 1731 aa15.58■□□□□ 0.08
LMO3-213ENST00000536172 ST20-MTHFSA0A0A6YYL1 179 aa15.58■□□□□ 0.08
LMO3-213ENST00000536172 POLD1P28340 1107 aa15.58■□□□□ 0.08
LMO3-213ENST00000536172 ZNF827Q17R98 1081 aa15.58■□□□□ 0.08
LMO3-213ENST00000536172 LTV1Q96GA3 475 aaPredicted RBP15.58■□□□□ 0.08
LMO3-213ENST00000536172 ZNF784Q8NCA9 323 aaPredicted RBP15.57■□□□□ 0.08
LMO3-213ENST00000536172 ZCRB1Q8TBF4 217 aaKnown RBP15.57■□□□□ 0.08
LMO3-213ENST00000536172 SYTL4Q96C24 671 aaPredicted RBP15.56■□□□□ 0.08
LMO3-213ENST00000536172 TFCP2L1Q9NZI6 479 aa15.56■□□□□ 0.08
LMO3-213ENST00000536172 SMG6Q86US8 1419 aaKnown RBP15.56■□□□□ 0.08
LMO3-213ENST00000536172 TUBGCP6Q96RT7 1819 aa15.56■□□□□ 0.08
LMO3-213ENST00000536172 PRIM1P49642 420 aaKnown RBP15.55■□□□□ 0.08
LMO3-213ENST00000536172 KIF24Q5T7B8 1368 aa15.54■□□□□ 0.08
LMO3-213ENST00000536172 PNPLA7Q6ZV29 1317 aa15.54■□□□□ 0.08
LMO3-213ENST00000536172 TMF1P82094 1093 aa15.54■□□□□ 0.08
LMO3-213ENST00000536172 CDCA8Q53HL2 280 aa15.54■□□□□ 0.08
LMO3-213ENST00000536172 MEGF6O75095 1541 aa15.53■□□□□ 0.08
LMO3-213ENST00000536172 KIF20BQ96Q89 1820 aa15.53■□□□□ 0.08
LMO3-213ENST00000536172 RAPGEF4Q8WZA2 1011 aa15.53■□□□□ 0.08
LMO3-213ENST00000536172 PCGF6Q9BYE7 350 aa15.53■□□□□ 0.08
LMO3-213ENST00000536172 NSD2O96028 1365 aa15.52■□□□□ 0.08
LMO3-213ENST00000536172 USP47Q96K76 1375 aa15.52■□□□□ 0.08
LMO3-213ENST00000536172 FYB1O15117 783 aa15.52■□□□□ 0.08
LMO3-213ENST00000536172 GPR162Q16538 588 aa15.52■□□□□ 0.08
LMO3-213ENST00000536172 CCNL1Q9UK58 526 aaPredicted RBP15.51■□□□□ 0.07
LMO3-213ENST00000536172 INSRP06213 1382 aa15.5■□□□□ 0.07
LMO3-213ENST00000536172 UTRNP46939 3433 aa15.5■□□□□ 0.07
LMO3-213ENST00000536172 TATP17735 454 aaPredicted RBP15.5■□□□□ 0.07
LMO3-213ENST00000536172 NBPF6Q5VWK0 638 aa15.5■□□□□ 0.07
LMO3-213ENST00000536172 NBPF4Q96M43 638 aa15.5■□□□□ 0.07
LMO3-213ENST00000536172 FLT4P35916 1363 aa15.49■□□□□ 0.07
LMO3-213ENST00000536172 PCDH11XQ9BZA7 1347 aa15.49■□□□□ 0.07
LMO3-213ENST00000536172 PCDH11YQ9BZA8 1340 aa15.49■□□□□ 0.07
LMO3-213ENST00000536172 C5P01031 1676 aa15.49■□□□□ 0.07
LMO3-213ENST00000536172 FBLN1P23142 703 aa15.49■□□□□ 0.07
LMO3-213ENST00000536172 RRS1Q15050 365 aaKnown RBP15.49■□□□□ 0.07
LMO3-213ENST00000536172 TAF1LQ8IZX4 1826 aa15.48■□□□□ 0.07
LMO3-213ENST00000536172 FLAD1Q8NFF5 587 aa15.48■□□□□ 0.07
LMO3-213ENST00000536172 GGNBP2Q9H3C7 697 aa15.48■□□□□ 0.07
LMO3-213ENST00000536172 KCNQ4P56696 695 aa15.47■□□□□ 0.07
LMO3-213ENST00000536172 KLHL34Q8N239 644 aa15.47■□□□□ 0.07
LMO3-213ENST00000536172 ITGB4P16144 1822 aa15.46■□□□□ 0.07
LMO3-213ENST00000536172 GRIN3BO60391 1043 aa15.46■□□□□ 0.07
LMO3-213ENST00000536172 MSH5O43196 834 aa15.45■□□□□ 0.06
LMO3-213ENST00000536172 C1QTNF8P60827 252 aa15.45■□□□□ 0.06
LMO3-213ENST00000536172 HSP90AB2PQ58FF8 381 aa15.45■□□□□ 0.06
LMO3-213ENST00000536172 SMARCC1Q92922 1105 aaPredicted RBP15.45■□□□□ 0.06
LMO3-213ENST00000536172 PKD1L3Q7Z443 1732 aa15.45■□□□□ 0.06
LMO3-213ENST00000536172 COL23A1Q86Y22 540 aaPredicted RBP15.44■□□□□ 0.06
LMO3-213ENST00000536172 USHBP1Q8N6Y0 703 aa15.44■□□□□ 0.06
LMO3-213ENST00000536172 NSD3Q9BZ95 1437 aa15.43■□□□□ 0.06
LMO3-213ENST00000536172 ANKRD26Q9UPS8 1709 aa15.43■□□□□ 0.06
LMO3-213ENST00000536172 PELP1Q8IZL8 1130 aaKnown RBP15.43■□□□□ 0.06
LMO3-213ENST00000536172 PALLDQ8WX93 1383 aa15.42■□□□□ 0.06
LMO3-213ENST00000536172 CD2APQ9Y5K6 639 aa15.42■□□□□ 0.06
LMO3-213ENST00000536172 MAP2P11137 1827 aaKnown RBP15.41■□□□□ 0.06
LMO3-213ENST00000536172 C4BP0C0L5 1744 aa15.41■□□□□ 0.06
LMO3-213ENST00000536172 MPRIPQ6WCQ1 1025 aa15.41■□□□□ 0.06
LMO3-213ENST00000536172 NLGN2Q8NFZ4 835 aa15.41■□□□□ 0.06
LMO3-213ENST00000536172 TIMELESSQ9UNS1 1208 aa15.41■□□□□ 0.06
LMO3-213ENST00000536172 NCAPD2Q15021 1401 aa15.41■□□□□ 0.06
LMO3-213ENST00000536172 TOGARAM1Q9Y4F4 1720 aa15.4■□□□□ 0.06
LMO3-213ENST00000536172 SENP3-EIF4A1A0A087X0R7 540 aa15.4■□□□□ 0.06
LMO3-213ENST00000536172 CYP27B1O15528 508 aa15.4■□□□□ 0.06
LMO3-213ENST00000536172 GIGYF1O75420 1035 aaPredicted RBP15.4■□□□□ 0.06
LMO3-213ENST00000536172 NKX1-1Q15270 411 aaPredicted RBP15.4■□□□□ 0.06
LMO3-213ENST00000536172 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.4■□□□□ 0.06
LMO3-213ENST00000536172 SPG7Q9UQ90 795 aa15.4■□□□□ 0.06
LMO3-213ENST00000536172 UBR3Q6ZT12 1888 aa15.4■□□□□ 0.06
LMO3-213ENST00000536172 PLEKHG2Q9H7P9 1386 aa15.39■□□□□ 0.05
LMO3-213ENST00000536172 AK7Q96M32 723 aa15.38■□□□□ 0.05
LMO3-213ENST00000536172 CARD14Q9BXL6 1004 aa15.38■□□□□ 0.05
LMO3-213ENST00000536172 GOLGB1Q14789 3259 aaKnown RBP15.38■□□□□ 0.05
LMO3-213ENST00000536172 WASHC2AQ641Q2 1341 aa15.38■□□□□ 0.05
LMO3-213ENST00000536172 YBX3P16989 372 aaKnown RBP eCLIP15.37■□□□□ 0.05
LMO3-213ENST00000536172 EMILIN1Q9Y6C2 1016 aa15.37■□□□□ 0.05
LMO3-213ENST00000536172 MSL1Q68DK7 614 aa15.36■□□□□ 0.05
LMO3-213ENST00000536172 PPM1GO15355 546 aaPredicted RBP15.35■□□□□ 0.05
LMO3-213ENST00000536172 SSFA2P28290 1259 aa15.35■□□□□ 0.05
LMO3-213ENST00000536172 PIGBQ92521 554 aa15.35■□□□□ 0.05
LMO3-213ENST00000536172 TMOD3Q9NYL9 352 aa15.34■□□□□ 0.05
LMO3-213ENST00000536172 LOC102724428A0A0B4J2F2 783 aa15.33■□□□□ 0.04
LMO3-213ENST00000536172 SIK1P57059 783 aa15.33■□□□□ 0.04
LMO3-213ENST00000536172 IFNL2Q8IZJ0 200 aa15.33■□□□□ 0.04
LMO3-213ENST00000536172 CLSPNQ9HAW4 1339 aa15.33■□□□□ 0.04
LMO3-213ENST00000536172 ZNF831Q5JPB2 1677 aa15.32■□□□□ 0.04
LMO3-213ENST00000536172 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.32■□□□□ 0.04
LMO3-213ENST00000536172 EYA1Q99502 592 aa15.32■□□□□ 0.04
LMO3-213ENST00000536172 POLKQ9UBT6 870 aa15.31■□□□□ 0.04
LMO3-213ENST00000536172 PHKG2P15735 406 aa15.3■□□□□ 0.04
LMO3-213ENST00000536172 CCER1Q8TC90 406 aaPredicted RBP15.3■□□□□ 0.04
LMO3-213ENST00000536172 ATP10DQ9P241 1426 aa15.29■□□□□ 0.04
LMO3-213ENST00000536172 PHF14O94880 888 aa15.29■□□□□ 0.04
LMO3-213ENST00000536172 HSP90AB1P08238 724 aaKnown RBP15.29■□□□□ 0.04
LMO3-213ENST00000536172 ATP6V1AP38606 617 aa15.29■□□□□ 0.04
LMO3-213ENST00000536172 LINC00116Q8NCU8 138 aa15.29■□□□□ 0.04
LMO3-213ENST00000536172 IGSF1Q8N6C5 1336 aa15.28■□□□□ 0.04
LMO3-213ENST00000536172 GPBP1L1Q9HC44 474 aaPredicted RBP15.28■□□□□ 0.04
LMO3-213ENST00000536172 ASAP1Q9ULH1 1129 aa15.28■□□□□ 0.04
LMO3-213ENST00000536172 KIF13BQ9NQT8 1826 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms