RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 TSGA10IPQ3SY00 556 aa10.59□□□□□ -0.71
PRKDC-205ENST00000535375 PLPP7Q8NBV4 271 aa10.59□□□□□ -0.71
PRKDC-205ENST00000535375 SPINT1O43278 529 aa10.58□□□□□ -0.72
PRKDC-205ENST00000535375 TRAK2O60296 914 aa10.58□□□□□ -0.72
PRKDC-205ENST00000535375 SKIP12755 728 aa10.58□□□□□ -0.72
PRKDC-205ENST00000535375 GLMNQ92990 594 aa10.58□□□□□ -0.72
PRKDC-205ENST00000535375 POLMQ9NP87 494 aaPredicted RBP10.58□□□□□ -0.72
PRKDC-205ENST00000535375 TTLL8A6PVC2 850 aa10.57□□□□□ -0.72
PRKDC-205ENST00000535375 PIK3CDO00329 1044 aa10.57□□□□□ -0.72
PRKDC-205ENST00000535375 WFS1O76024 890 aa10.57□□□□□ -0.72
PRKDC-205ENST00000535375 NFATC2IPQ8NCF5 419 aa10.57□□□□□ -0.72
PRKDC-205ENST00000535375 CALR3Q96L12 384 aaKnown RBP10.57□□□□□ -0.72
PRKDC-205ENST00000535375 INSM2Q96T92 566 aaPredicted RBP10.57□□□□□ -0.72
PRKDC-205ENST00000535375 ZMYND15Q9H091 742 aa10.57□□□□□ -0.72
PRKDC-205ENST00000535375 CHIC2Q9UKJ5 165 aa10.57□□□□□ -0.72
PRKDC-205ENST00000535375 ADAMTS19Q8TE59 1207 aa10.56□□□□□ -0.72
PRKDC-205ENST00000535375 OSBPL3Q9H4L5 887 aa10.56□□□□□ -0.72
PRKDC-205ENST00000535375 MEN1O00255 615 aa10.55□□□□□ -0.72
PRKDC-205ENST00000535375 ZNF777Q9ULD5 760 aaPredicted RBP10.55□□□□□ -0.72
PRKDC-205ENST00000535375 SOS2Q07890 1332 aaPredicted RBP10.55□□□□□ -0.72
PRKDC-205ENST00000535375 FIGNL2A6NMB9 653 aa10.54□□□□□ -0.72
PRKDC-205ENST00000535375 LZTS3O60299 673 aaPredicted RBP10.54□□□□□ -0.72
PRKDC-205ENST00000535375 EML3Q32P44 896 aa10.54□□□□□ -0.72
PRKDC-205ENST00000535375 KDF1Q8NAX2 398 aaPredicted RBP10.54□□□□□ -0.72
PRKDC-205ENST00000535375 NLRP3Q96P20 1036 aa10.54□□□□□ -0.72
PRKDC-205ENST00000535375 A0A1W2PRU2 124 aa10.53□□□□□ -0.72
PRKDC-205ENST00000535375 SOBPA7XYQ1 873 aa10.53□□□□□ -0.72
PRKDC-205ENST00000535375 TERTO14746 1132 aaKnown RBP10.53□□□□□ -0.72
PRKDC-205ENST00000535375 GNRH1P01148 92 aa10.53□□□□□ -0.72
PRKDC-205ENST00000535375 CTSOP43234 321 aaPredicted RBP10.53□□□□□ -0.72
PRKDC-205ENST00000535375 NFX1Q12986 1120 aaKnown RBP10.53□□□□□ -0.72
PRKDC-205ENST00000535375 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.52□□□□□ -0.73
PRKDC-205ENST00000535375 ARHGEF10LQ9HCE6 1279 aa10.52□□□□□ -0.73
PRKDC-205ENST00000535375 USP17L5A8MUK1 530 aa10.51□□□□□ -0.73
PRKDC-205ENST00000535375 LCE2AQ5TA79 106 aaPredicted RBP10.51□□□□□ -0.73
PRKDC-205ENST00000535375 C14orf37Q86TY3 774 aa10.51□□□□□ -0.73
PRKDC-205ENST00000535375 DNMT3LQ9UJW3 386 aa10.51□□□□□ -0.73
PRKDC-205ENST00000535375 NOD1Q9Y239 953 aa10.51□□□□□ -0.73
PRKDC-205ENST00000535375 CLN3Q13286 438 aa10.5□□□□□ -0.73
PRKDC-205ENST00000535375 ESCO1Q5FWF5 840 aa10.5□□□□□ -0.73
PRKDC-205ENST00000535375 TBC1D9Q6ZT07 1266 aa10.5□□□□□ -0.73
PRKDC-205ENST00000535375 ATP9BO43861 1147 aa10.49□□□□□ -0.73
PRKDC-205ENST00000535375 NCOA4Q13772 614 aa10.49□□□□□ -0.73
PRKDC-205ENST00000535375 DEPDC4Q8N2C3 294 aa10.49□□□□□ -0.73
PRKDC-205ENST00000535375 SLC16A10Q8TF71 515 aa10.49□□□□□ -0.73
PRKDC-205ENST00000535375 UCN2Q96RP3 112 aa10.49□□□□□ -0.73
PRKDC-205ENST00000535375 RAB6BQ9NRW1 208 aa10.49□□□□□ -0.73
PRKDC-205ENST00000535375 NXF1Q9UBU9 619 aaKnown RBP10.49□□□□□ -0.73
PRKDC-205ENST00000535375 RNF144AP50876 292 aaPredicted RBP10.48□□□□□ -0.73
PRKDC-205ENST00000535375 SLC27A3Q5K4L6 730 aa10.48□□□□□ -0.73
PRKDC-205ENST00000535375 TFIP11Q9UBB9 837 aaKnown RBP10.48□□□□□ -0.73
PRKDC-205ENST00000535375 RNF217Q8TC41 542 aa10.47□□□□□ -0.73
PRKDC-205ENST00000535375 USP17L3A6NCW0 530 aa10.46□□□□□ -0.73
PRKDC-205ENST00000535375 USP17L4A6NCW7 530 aa10.46□□□□□ -0.73
PRKDC-205ENST00000535375 GPC1P35052 558 aa10.46□□□□□ -0.73
PRKDC-205ENST00000535375 PSME1Q06323 249 aa10.46□□□□□ -0.73
PRKDC-205ENST00000535375 USP17L2Q6R6M4 530 aa10.46□□□□□ -0.73
PRKDC-205ENST00000535375 USP17L1Q7RTZ2 530 aa10.46□□□□□ -0.73
PRKDC-205ENST00000535375 LYSMD3Q7Z3D4 306 aa10.46□□□□□ -0.73
PRKDC-205ENST00000535375 TRIM50Q86XT4 487 aa10.46□□□□□ -0.73
PRKDC-205ENST00000535375 CNKSR1Q969H4 720 aa10.46□□□□□ -0.73
PRKDC-205ENST00000535375 ESYT1Q9BSJ8 1104 aa10.46□□□□□ -0.73
PRKDC-205ENST00000535375 GTF2E1P29083 439 aaPredicted RBP10.45□□□□□ -0.74
PRKDC-205ENST00000535375 FOXD4L5Q5VV16 416 aaPredicted RBP10.45□□□□□ -0.74
PRKDC-205ENST00000535375 PLEKHM2Q8IWE5 1019 aa10.45□□□□□ -0.74
PRKDC-205ENST00000535375 NPAS3Q8IXF0 933 aa10.45□□□□□ -0.74
PRKDC-205ENST00000535375 PALM3A6NDB9 673 aaPredicted RBP10.44□□□□□ -0.74
PRKDC-205ENST00000535375 GTF2IP78347 998 aa10.44□□□□□ -0.74
PRKDC-205ENST00000535375 ERICH6Q7L0X2 663 aa10.44□□□□□ -0.74
PRKDC-205ENST00000535375 PRICKLE2Q7Z3G6 844 aa10.44□□□□□ -0.74
PRKDC-205ENST00000535375 XAGE2Q96GT9 111 aa10.44□□□□□ -0.74
PRKDC-205ENST00000535375 PPP1R12CQ9BZL4 782 aa10.44□□□□□ -0.74
PRKDC-205ENST00000535375 IL2RAP01589 272 aa10.43□□□□□ -0.74
PRKDC-205ENST00000535375 CENPCQ03188 943 aa10.43□□□□□ -0.74
PRKDC-205ENST00000535375 ETNK1Q9HBU6 452 aa10.43□□□□□ -0.74
PRKDC-205ENST00000535375 ATP1A2P50993 1020 aa10.42□□□□□ -0.74
PRKDC-205ENST00000535375 GDF10P55107 478 aa10.42□□□□□ -0.74
PRKDC-205ENST00000535375 PTSQ03393 145 aa10.42□□□□□ -0.74
PRKDC-205ENST00000535375 MKRN1Q9UHC7 482 aaKnown RBP10.42□□□□□ -0.74
PRKDC-205ENST00000535375 PCDHGA11Q9Y5H2 935 aa10.42□□□□□ -0.74
PRKDC-205ENST00000535375 MAFBQ9Y5Q3 323 aaPredicted RBP10.42□□□□□ -0.74
PRKDC-205ENST00000535375 VEGFBP49765 207 aa10.41□□□□□ -0.74
PRKDC-205ENST00000535375 ZSCAN10Q96SZ4 725 aaPredicted RBP10.41□□□□□ -0.74
PRKDC-205ENST00000535375 RBM19Q9Y4C8 960 aaKnown RBP10.41□□□□□ -0.74
PRKDC-205ENST00000535375 H3BM21 787 aa10.4□□□□□ -0.74
PRKDC-205ENST00000535375 WIPF1O43516 503 aa10.4□□□□□ -0.74
PRKDC-205ENST00000535375 STAU1O95793 577 aaKnown RBP10.4□□□□□ -0.74
PRKDC-205ENST00000535375 INHAP05111 366 aa10.4□□□□□ -0.74
PRKDC-205ENST00000535375 LMOD1P29536 600 aaPredicted RBP10.4□□□□□ -0.74
PRKDC-205ENST00000535375 TMEM214Q6NUQ4 689 aaKnown RBP10.4□□□□□ -0.74
PRKDC-205ENST00000535375 IRF7Q92985 503 aa10.4□□□□□ -0.74
PRKDC-205ENST00000535375 GRIP2Q9C0E4 1043 aa10.4□□□□□ -0.74
PRKDC-205ENST00000535375 RHOQP17081 205 aa10.39□□□□□ -0.75
PRKDC-205ENST00000535375 POU4F2Q12837 409 aa10.39□□□□□ -0.75
PRKDC-205ENST00000535375 TLR1Q15399 786 aa10.39□□□□□ -0.75
PRKDC-205ENST00000535375 LCE2CQ5TA81 110 aa10.39□□□□□ -0.75
PRKDC-205ENST00000535375 SERTAD1Q9UHV2 236 aa10.39□□□□□ -0.75
PRKDC-205ENST00000535375 SCNN1DP51172 638 aa10.38□□□□□ -0.75
PRKDC-205ENST00000535375 GNASQ5JWF2 1037 aa10.38□□□□□ -0.75
PRKDC-205ENST00000535375 OGFOD1Q8N543 542 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms