RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 ZIC2O95409 532 aaPredicted RBP7.93□□□□□ -1.14
CD44-236ENST00000533222 ERVK-9P63128 1117 aa7.93□□□□□ -1.14
CD44-236ENST00000533222 DHX9Q08211 1270 aaKnown RBP7.93□□□□□ -1.14
CD44-236ENST00000533222 MAP7D1Q3KQU3 841 aa7.93□□□□□ -1.14
CD44-236ENST00000533222 KANK4Q5T7N3 995 aaPredicted RBP7.93□□□□□ -1.14
CD44-236ENST00000533222 KIAA1024Q9UPX6 916 aa7.93□□□□□ -1.14
CD44-236ENST00000533222 EML3Q32P44 896 aa7.92□□□□□ -1.14
CD44-236ENST00000533222 CC2D2BQ6DHV5 1058 aa7.92□□□□□ -1.14
CD44-236ENST00000533222 OSBPL3Q9H4L5 887 aa7.92□□□□□ -1.14
CD44-236ENST00000533222 MKRN1Q9UHC7 482 aaKnown RBP7.92□□□□□ -1.14
CD44-236ENST00000533222 EMILIN1Q9Y6C2 1016 aa7.92□□□□□ -1.14
CD44-236ENST00000533222 NRG2O14511 850 aaPredicted RBP7.91□□□□□ -1.14
CD44-236ENST00000533222 PDIA4P13667 645 aaKnown RBP7.91□□□□□ -1.14
CD44-236ENST00000533222 CLDN10P78369 228 aa7.91□□□□□ -1.14
CD44-236ENST00000533222 CRTC2Q53ET0 693 aaPredicted RBP7.91□□□□□ -1.14
CD44-236ENST00000533222 AGBL1Q96MI9 1066 aa7.91□□□□□ -1.14
CD44-236ENST00000533222 PGPEP1Q9NXJ5 209 aa7.91□□□□□ -1.14
CD44-236ENST00000533222 KDF1Q8NAX2 398 aaPredicted RBP7.9□□□□□ -1.14
CD44-236ENST00000533222 PBXIP1Q96AQ6 731 aa7.9□□□□□ -1.14
CD44-236ENST00000533222 CCDC180Q9P1Z9 1646 aa7.89□□□□□ -1.15
CD44-236ENST00000533222 GTF2IP78347 998 aa7.89□□□□□ -1.15
CD44-236ENST00000533222 ZNF594Q96JF6 807 aaPredicted RBP7.89□□□□□ -1.15
CD44-236ENST00000533222 NOD1Q9Y239 953 aa7.89□□□□□ -1.15
CD44-236ENST00000533222 PCDHGA11Q9Y5H2 935 aa7.89□□□□□ -1.15
CD44-236ENST00000533222 ST8SIA5O15466 376 aa7.88□□□□□ -1.15
CD44-236ENST00000533222 PKDCCQ504Y2 493 aa7.88□□□□□ -1.15
CD44-236ENST00000533222 OGFOD1Q8N543 542 aa7.88□□□□□ -1.15
CD44-236ENST00000533222 IRX2Q9BZI1 471 aaPredicted RBP7.88□□□□□ -1.15
CD44-236ENST00000533222 VRTNQ9H8Y1 702 aa7.88□□□□□ -1.15
CD44-236ENST00000533222 RAB6BQ9NRW1 208 aa7.88□□□□□ -1.15
CD44-236ENST00000533222 USP17L15C9J2P7 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L10C9JJH3 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L13C9JLJ4 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L12C9JPN9 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L11C9JVI0 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L21D6R901 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L18D6R9N7 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L22D6RA61 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L17D6RBQ6 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L19D6RCP7 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L20D6RJB6 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 CAPN5O15484 640 aaPredicted RBP7.87□□□□□ -1.15
CD44-236ENST00000533222 MYCP01106 439 aaPredicted RBP7.87□□□□□ -1.15
CD44-236ENST00000533222 AVPP01185 164 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 ADH1AP07327 375 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 BMP1P13497 986 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 RASA1P20936 1047 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP17L24Q0WX57 530 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 USP4Q13107 963 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 Q6ZVU0 165 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 CCDC125Q86Z20 511 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 MEIOBQ8N635 442 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 ZMIZ1Q9ULJ6 1067 aa7.87□□□□□ -1.15
CD44-236ENST00000533222 CARNS1A5YM72 827 aa7.86□□□□□ -1.15
CD44-236ENST00000533222 ATP5J2-PTCD1G3V325 749 aa7.86□□□□□ -1.15
CD44-236ENST00000533222 ZBTB7BO15156 539 aaPredicted RBP7.86□□□□□ -1.15
CD44-236ENST00000533222 RELBQ01201 579 aa7.86□□□□□ -1.15
CD44-236ENST00000533222 PTK7Q13308 1070 aa7.86□□□□□ -1.15
CD44-236ENST00000533222 TAF7LQ5H9L4 462 aa7.86□□□□□ -1.15
CD44-236ENST00000533222 ARHGEF10LQ9HCE6 1279 aa7.86□□□□□ -1.15
CD44-236ENST00000533222 DCAF1Q9Y4B6 1507 aa7.86□□□□□ -1.15
CD44-236ENST00000533222 LCE2BO14633 110 aa7.85□□□□□ -1.15
CD44-236ENST00000533222 LZTS3O60299 673 aaPredicted RBP7.85□□□□□ -1.15
CD44-236ENST00000533222 DGAT1O75907 488 aa7.85□□□□□ -1.15
CD44-236ENST00000533222 DKK1O94907 266 aa7.85□□□□□ -1.15
CD44-236ENST00000533222 SCNN1DP51172 638 aa7.85□□□□□ -1.15
CD44-236ENST00000533222 PSME1Q06323 249 aa7.85□□□□□ -1.15
CD44-236ENST00000533222 NEUROD1Q13562 356 aa7.85□□□□□ -1.15
CD44-236ENST00000533222 ZNF326Q5BKZ1 582 aaKnown RBP7.85□□□□□ -1.15
CD44-236ENST00000533222 TPCN2Q8NHX9 752 aa7.85□□□□□ -1.15
CD44-236ENST00000533222 STK32AQ8WU08 396 aa7.85□□□□□ -1.15
CD44-236ENST00000533222 ZNF395Q9H8N7 513 aaPredicted RBP7.85□□□□□ -1.15
CD44-236ENST00000533222 DNAAF2Q9NVR5 837 aaKnown RBP7.85□□□□□ -1.15
CD44-236ENST00000533222 DACH1Q9UI36 760 aa7.85□□□□□ -1.15
CD44-236ENST00000533222 CDK11AQ9UQ88 783 aaPredicted RBP7.85□□□□□ -1.15
CD44-236ENST00000533222 TMEM229AB2RXF0 380 aa7.84□□□□□ -1.15
CD44-236ENST00000533222 LGR5O75473 907 aa7.84□□□□□ -1.15
CD44-236ENST00000533222 CYP2U1Q7Z449 544 aa7.84□□□□□ -1.15
CD44-236ENST00000533222 TRIM50Q86XT4 487 aa7.84□□□□□ -1.15
CD44-236ENST00000533222 ETNK1Q9HBU6 452 aa7.84□□□□□ -1.15
CD44-236ENST00000533222 FAM196BA6NMK8 535 aa7.83□□□□□ -1.16
CD44-236ENST00000533222 SFI1A8K8P3 1242 aa7.83□□□□□ -1.16
CD44-236ENST00000533222 ATG7O95352 703 aa7.83□□□□□ -1.16
CD44-236ENST00000533222 PDE4CQ08493 712 aa7.83□□□□□ -1.16
CD44-236ENST00000533222 DPYDQ12882 1025 aa7.83□□□□□ -1.16
CD44-236ENST00000533222 GLIPR1L2Q4G1C9 344 aa7.83□□□□□ -1.16
CD44-236ENST00000533222 LARP1Q6PKG0 1096 aaKnown RBP7.83□□□□□ -1.16
CD44-236ENST00000533222 TRIM46Q7Z4K8 759 aa7.83□□□□□ -1.16
CD44-236ENST00000533222 RETREG2Q8NC44 543 aa7.83□□□□□ -1.16
CD44-236ENST00000533222 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.83□□□□□ -1.16
CD44-236ENST00000533222 SIRT1Q96EB6 747 aa7.83□□□□□ -1.16
CD44-236ENST00000533222 ESF1Q9H501 851 aaKnown RBP7.83□□□□□ -1.16
CD44-236ENST00000533222 NOVA2Q9UNW9 492 aaKnown RBP7.83□□□□□ -1.16
CD44-236ENST00000533222 IL2RAP01589 272 aa7.82□□□□□ -1.16
CD44-236ENST00000533222 ATP1A2P50993 1020 aa7.82□□□□□ -1.16
CD44-236ENST00000533222 GDF10P55107 478 aa7.82□□□□□ -1.16
CD44-236ENST00000533222 C6orf118Q5T5N4 469 aa7.82□□□□□ -1.16
CD44-236ENST00000533222 CCDC102BQ68D86 513 aa7.82□□□□□ -1.16
CD44-236ENST00000533222 PPARGC1BQ86YN6 1023 aaKnown RBP7.82□□□□□ -1.16
CD44-236ENST00000533222 SIX5Q8N196 739 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms