RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-223ENST00000533079 TERF2IPQ9NYB0 399 aa17.7■□□□□ 0.42
CAPN1-223ENST00000533079 SYTL4Q96C24 671 aaPredicted RBP17.69■□□□□ 0.42
CAPN1-223ENST00000533079 ATP10DQ9P241 1426 aa17.69■□□□□ 0.42
CAPN1-223ENST00000533079 USP47Q96K76 1375 aa17.68■□□□□ 0.42
CAPN1-223ENST00000533079 YBX3P16989 372 aaKnown RBP eCLIP17.68■□□□□ 0.42
CAPN1-223ENST00000533079 PRIM1P49642 420 aaKnown RBP17.68■□□□□ 0.42
CAPN1-223ENST00000533079 CCNL1Q9UK58 526 aaPredicted RBP17.68■□□□□ 0.42
CAPN1-223ENST00000533079 RTL1A6NKG5 1358 aa17.67■□□□□ 0.42
CAPN1-223ENST00000533079 PUS7Q96PZ0 661 aaKnown RBP17.67■□□□□ 0.42
CAPN1-223ENST00000533079 MEGF6O75095 1541 aa17.67■□□□□ 0.42
CAPN1-223ENST00000533079 ADCY9O60503 1353 aa17.66■□□□□ 0.42
CAPN1-223ENST00000533079 TMC1Q8TDI8 760 aa17.66■□□□□ 0.42
CAPN1-223ENST00000533079 CGNL1Q0VF96 1302 aa17.66■□□□□ 0.42
CAPN1-223ENST00000533079 ZCRB1Q8TBF4 217 aaKnown RBP17.65■□□□□ 0.42
CAPN1-223ENST00000533079 CD2APQ9Y5K6 639 aa17.65■□□□□ 0.42
CAPN1-223ENST00000533079 FLAD1Q8NFF5 587 aa17.64■□□□□ 0.41
CAPN1-223ENST00000533079 KAT6BQ8WYB5 2073 aa17.63■□□□□ 0.41
CAPN1-223ENST00000533079 HOXC9P31274 260 aa17.63■□□□□ 0.41
CAPN1-223ENST00000533079 KCNQ4P56696 695 aa17.63■□□□□ 0.41
CAPN1-223ENST00000533079 COL23A1Q86Y22 540 aaPredicted RBP17.63■□□□□ 0.41
CAPN1-223ENST00000533079 GPBP1L1Q9HC44 474 aaPredicted RBP17.63■□□□□ 0.41
CAPN1-223ENST00000533079 SMG6Q86US8 1419 aaKnown RBP17.63■□□□□ 0.41
CAPN1-223ENST00000533079 NSD3Q9BZ95 1437 aa17.63■□□□□ 0.41
CAPN1-223ENST00000533079 RGPD2P0DJD1 1756 aa17.62■□□□□ 0.41
CAPN1-223ENST00000533079 MSH5O43196 834 aa17.62■□□□□ 0.41
CAPN1-223ENST00000533079 CARD11Q9BXL7 1154 aa17.62■□□□□ 0.41
CAPN1-223ENST00000533079 SLC12A5Q9H2X9 1139 aa17.62■□□□□ 0.41
CAPN1-223ENST00000533079 TAF1LQ8IZX4 1826 aa17.62■□□□□ 0.41
CAPN1-223ENST00000533079 MAP3K19Q56UN5 1328 aa17.62■□□□□ 0.41
CAPN1-223ENST00000533079 LTV1Q96GA3 475 aaPredicted RBP17.61■□□□□ 0.41
CAPN1-223ENST00000533079 COG3Q96JB2 828 aa17.61■□□□□ 0.41
CAPN1-223ENST00000533079 HSPA6P17066 643 aa17.6■□□□□ 0.41
CAPN1-223ENST00000533079 C4BP0C0L5 1744 aa17.6■□□□□ 0.41
CAPN1-223ENST00000533079 CICQ96RK0 1608 aaPredicted RBP17.59■□□□□ 0.41
CAPN1-223ENST00000533079 AMPHP49418 695 aa17.59■□□□□ 0.41
CAPN1-223ENST00000533079 SIN3AQ96ST3 1273 aa17.59■□□□□ 0.41
CAPN1-223ENST00000533079 PALLDQ8WX93 1383 aa17.58■□□□□ 0.4
CAPN1-223ENST00000533079 PCDH11XQ9BZA7 1347 aa17.58■□□□□ 0.4
CAPN1-223ENST00000533079 PCDH11YQ9BZA8 1340 aa17.58■□□□□ 0.4
CAPN1-223ENST00000533079 MSL1Q68DK7 614 aa17.58■□□□□ 0.4
CAPN1-223ENST00000533079 TOGARAM1Q9Y4F4 1720 aa17.58■□□□□ 0.4
CAPN1-223ENST00000533079 SLC24A1O60721 1099 aa17.56■□□□□ 0.4
CAPN1-223ENST00000533079 RAPGEF4Q8WZA2 1011 aa17.56■□□□□ 0.4
CAPN1-223ENST00000533079 PKD1L3Q7Z443 1732 aa17.55■□□□□ 0.4
CAPN1-223ENST00000533079 KIF24Q5T7B8 1368 aa17.55■□□□□ 0.4
CAPN1-223ENST00000533079 NEUROD1Q13562 356 aa17.55■□□□□ 0.4
CAPN1-223ENST00000533079 UBR3Q6ZT12 1888 aa17.54■□□□□ 0.4
CAPN1-223ENST00000533079 TATP17735 454 aaPredicted RBP17.53■□□□□ 0.4
CAPN1-223ENST00000533079 AK7Q96M32 723 aa17.53■□□□□ 0.4
CAPN1-223ENST00000533079 IGSF1Q8N6C5 1336 aa17.52■□□□□ 0.4
CAPN1-223ENST00000533079 NBPF6Q5VWK0 638 aa17.52■□□□□ 0.4
CAPN1-223ENST00000533079 SMARCC1Q92922 1105 aaPredicted RBP17.52■□□□□ 0.4
CAPN1-223ENST00000533079 NBPF4Q96M43 638 aa17.52■□□□□ 0.4
CAPN1-223ENST00000533079 INSRP06213 1382 aa17.52■□□□□ 0.39
CAPN1-223ENST00000533079 ITGB4P16144 1822 aa17.51■□□□□ 0.39
CAPN1-223ENST00000533079 KIF20BQ96Q89 1820 aa17.51■□□□□ 0.39
CAPN1-223ENST00000533079 FLT4P35916 1363 aa17.51■□□□□ 0.39
CAPN1-223ENST00000533079 SSFA2P28290 1259 aa17.5■□□□□ 0.39
CAPN1-223ENST00000533079 ZNF526Q8TF50 670 aaPredicted RBP17.5■□□□□ 0.39
CAPN1-223ENST00000533079 KIF13BQ9NQT8 1826 aa17.49■□□□□ 0.39
CAPN1-223ENST00000533079 NCAPD2Q15021 1401 aa17.48■□□□□ 0.39
CAPN1-223ENST00000533079 MPRIPQ6WCQ1 1025 aa17.48■□□□□ 0.39
CAPN1-223ENST00000533079 USHBP1Q8N6Y0 703 aa17.48■□□□□ 0.39
CAPN1-223ENST00000533079 TESK2Q96S53 571 aa17.48■□□□□ 0.39
CAPN1-223ENST00000533079 MAP2P11137 1827 aaKnown RBP17.48■□□□□ 0.39
CAPN1-223ENST00000533079 RRS1Q15050 365 aaKnown RBP17.47■□□□□ 0.39
CAPN1-223ENST00000533079 TONSLQ96HA7 1378 aa17.47■□□□□ 0.39
CAPN1-223ENST00000533079 ANKRD26Q9UPS8 1709 aa17.47■□□□□ 0.39
CAPN1-223ENST00000533079 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.46■□□□□ 0.39
CAPN1-223ENST00000533079 KIF3CO14782 793 aa17.46■□□□□ 0.39
CAPN1-223ENST00000533079 APLP1P51693 650 aa17.46■□□□□ 0.39
CAPN1-223ENST00000533079 KIAA1551Q9HCM1 1747 aa17.45■□□□□ 0.38
CAPN1-223ENST00000533079 FBLN1P23142 703 aa17.45■□□□□ 0.38
CAPN1-223ENST00000533079 FYB1O15117 783 aa17.44■□□□□ 0.38
CAPN1-223ENST00000533079 CYP27B1O15528 508 aa17.44■□□□□ 0.38
CAPN1-223ENST00000533079 PHF14O94880 888 aa17.44■□□□□ 0.38
CAPN1-223ENST00000533079 PXDNLA1KZ92 1463 aa17.44■□□□□ 0.38
CAPN1-223ENST00000533079 PLEKHG2Q9H7P9 1386 aa17.43■□□□□ 0.38
CAPN1-223ENST00000533079 ZNF831Q5JPB2 1677 aa17.43■□□□□ 0.38
CAPN1-223ENST00000533079 NKX1-1Q15270 411 aaPredicted RBP17.43■□□□□ 0.38
CAPN1-223ENST00000533079 AMIGO3Q86WK7 504 aa17.43■□□□□ 0.38
CAPN1-223ENST00000533079 GGNBP2Q9H3C7 697 aa17.42■□□□□ 0.38
CAPN1-223ENST00000533079 ST20-MTHFSA0A0A6YYL1 179 aa17.41■□□□□ 0.38
CAPN1-223ENST00000533079 LOC102724428A0A0B4J2F2 783 aa17.41■□□□□ 0.38
CAPN1-223ENST00000533079 TOMM70O94826 608 aa17.41■□□□□ 0.38
CAPN1-223ENST00000533079 SIK1P57059 783 aa17.41■□□□□ 0.38
CAPN1-223ENST00000533079 HSP90AB2PQ58FF8 381 aa17.41■□□□□ 0.38
CAPN1-223ENST00000533079 PIGBQ92521 554 aa17.41■□□□□ 0.38
CAPN1-223ENST00000533079 WDR90Q96KV7 1748 aa17.41■□□□□ 0.38
CAPN1-223ENST00000533079 C10orf71Q711Q0 1435 aa17.4■□□□□ 0.38
CAPN1-223ENST00000533079 TGFB2P61812 414 aa17.4■□□□□ 0.38
CAPN1-223ENST00000533079 LINC00116Q8NCU8 138 aa17.4■□□□□ 0.38
CAPN1-223ENST00000533079 SPG7Q9UQ90 795 aa17.4■□□□□ 0.38
CAPN1-223ENST00000533079 GNPATO15228 680 aa17.39■□□□□ 0.37
CAPN1-223ENST00000533079 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.39■□□□□ 0.37
CAPN1-223ENST00000533079 TRIM26Q12899 539 aaPredicted RBP17.38■□□□□ 0.37
CAPN1-223ENST00000533079 TMOD3Q9NYL9 352 aa17.38■□□□□ 0.37
CAPN1-223ENST00000533079 C4AP0C0L4 1744 aa17.38■□□□□ 0.37
CAPN1-223ENST00000533079 BRCA1P38398 1863 aaKnown RBP17.37■□□□□ 0.37
CAPN1-223ENST00000533079 TMF1P82094 1093 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms