RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CYP2U1Q7Z449 544 aa8.4□□□□□ -1.06
CD44-235ENST00000532339 CCDC155Q8N6L0 562 aa8.4□□□□□ -1.06
CD44-235ENST00000532339 SLC35F4A4IF30 521 aa8.39□□□□□ -1.07
CD44-235ENST00000532339 ABL2P42684 1182 aa8.39□□□□□ -1.07
CD44-235ENST00000532339 GDPD2Q9HCC8 539 aa8.39□□□□□ -1.07
CD44-235ENST00000532339 RNF144AP50876 292 aaPredicted RBP8.38□□□□□ -1.07
CD44-235ENST00000532339 WASHC4Q2M389 1173 aa8.38□□□□□ -1.07
CD44-235ENST00000532339 LYSMD3Q7Z3D4 306 aa8.38□□□□□ -1.07
CD44-235ENST00000532339 A0A1W2PRU2 124 aa8.37□□□□□ -1.07
CD44-235ENST00000532339 GPC1P35052 558 aa8.37□□□□□ -1.07
CD44-235ENST00000532339 SCTRP47872 440 aa8.37□□□□□ -1.07
CD44-235ENST00000532339 MEN1O00255 615 aa8.36□□□□□ -1.07
CD44-235ENST00000532339 MYCP01106 439 aaPredicted RBP8.36□□□□□ -1.07
CD44-235ENST00000532339 VAC14Q08AM6 782 aa8.36□□□□□ -1.07
CD44-235ENST00000532339 ZSCAN1Q8NBB4 408 aa8.36□□□□□ -1.07
CD44-235ENST00000532339 NANOS1Q8WY41 292 aaKnown RBP8.36□□□□□ -1.07
CD44-235ENST00000532339 NLRP3Q96P20 1036 aa8.36□□□□□ -1.07
CD44-235ENST00000532339 OSBPL3Q9H4L5 887 aa8.36□□□□□ -1.07
CD44-235ENST00000532339 FAM181BA6NEQ2 426 aa8.35□□□□□ -1.07
CD44-235ENST00000532339 TRAK2O60296 914 aa8.35□□□□□ -1.07
CD44-235ENST00000532339 ITGA6P23229 1130 aa8.35□□□□□ -1.07
CD44-235ENST00000532339 SLFNL1Q499Z3 407 aa8.35□□□□□ -1.07
CD44-235ENST00000532339 CCDC85AQ96PX6 553 aaPredicted RBP8.35□□□□□ -1.07
CD44-235ENST00000532339 CLN3Q13286 438 aa8.34□□□□□ -1.07
CD44-235ENST00000532339 PRICKLE2Q7Z3G6 844 aa8.34□□□□□ -1.07
CD44-235ENST00000532339 SENP3-EIF4A1A0A087X0R7 540 aa8.33□□□□□ -1.08
CD44-235ENST00000532339 GNRH1P01148 92 aa8.33□□□□□ -1.08
CD44-235ENST00000532339 SOX11P35716 441 aa8.33□□□□□ -1.08
CD44-235ENST00000532339 SLC27A3Q5K4L6 730 aa8.33□□□□□ -1.08
CD44-235ENST00000532339 RNF135Q8IUD6 432 aa8.33□□□□□ -1.08
CD44-235ENST00000532339 PHTF2Q8N3S3 785 aa8.33□□□□□ -1.08
CD44-235ENST00000532339 CDCA7Q9BWT1 371 aaPredicted RBP8.33□□□□□ -1.08
CD44-235ENST00000532339 ARHGEF10LQ9HCE6 1279 aa8.33□□□□□ -1.08
CD44-235ENST00000532339 DOLKQ9UPQ8 538 aa8.33□□□□□ -1.08
CD44-235ENST00000532339 LORP23490 312 aaPredicted RBP8.32□□□□□ -1.08
CD44-235ENST00000532339 SV2AQ7L0J3 742 aa8.32□□□□□ -1.08
CD44-235ENST00000532339 COG6Q9Y2V7 657 aa8.32□□□□□ -1.08
CD44-235ENST00000532339 CDC14CA4D256 554 aa8.31□□□□□ -1.08
CD44-235ENST00000532339 RHOQP17081 205 aa8.31□□□□□ -1.08
CD44-235ENST00000532339 USP4Q13107 963 aa8.31□□□□□ -1.08
CD44-235ENST00000532339 SEMA3FQ13275 785 aa8.31□□□□□ -1.08
CD44-235ENST00000532339 WWC1Q8IX03 1113 aa8.31□□□□□ -1.08
CD44-235ENST00000532339 GPR161Q8N6U8 529 aaKnown RBP8.31□□□□□ -1.08
CD44-235ENST00000532339 FLIIQ13045 1269 aa8.3□□□□□ -1.08
CD44-235ENST00000532339 VWA5B2Q8N398 1253 aa8.3□□□□□ -1.08
CD44-235ENST00000532339 SIRT1Q96EB6 747 aa8.3□□□□□ -1.08
CD44-235ENST00000532339 GRIP2Q9C0E4 1043 aa8.3□□□□□ -1.08
CD44-235ENST00000532339 ESYT1Q9BSJ8 1104 aa8.29□□□□□ -1.08
CD44-235ENST00000532339 COL25A1Q9BXS0 654 aaPredicted RBP8.29□□□□□ -1.08
CD44-235ENST00000532339 RAB6BQ9NRW1 208 aa8.29□□□□□ -1.08
CD44-235ENST00000532339 CHIC2Q9UKJ5 165 aa8.29□□□□□ -1.08
CD44-235ENST00000532339 SPATA31C2B4DYI2 1134 aa8.28□□□□□ -1.08
CD44-235ENST00000532339 RAD21O60216 631 aa8.28□□□□□ -1.08
CD44-235ENST00000532339 POU4F2Q12837 409 aa8.28□□□□□ -1.08
CD44-235ENST00000532339 MAP7D1Q3KQU3 841 aa8.28□□□□□ -1.08
CD44-235ENST00000532339 TSGA10IPQ3SY00 556 aa8.28□□□□□ -1.08
CD44-235ENST00000532339 OXLD1Q5BKU9 147 aa8.28□□□□□ -1.08
CD44-235ENST00000532339 ESCO1Q5FWF5 840 aa8.28□□□□□ -1.08
CD44-235ENST00000532339 CNKSR1Q969H4 720 aa8.28□□□□□ -1.08
CD44-235ENST00000532339 CNTNAP3BQ96NU0 1288 aa8.28□□□□□ -1.08
CD44-235ENST00000532339 CNTNAP3Q9BZ76 1288 aa8.28□□□□□ -1.08
CD44-235ENST00000532339 IL2RAP01589 272 aa8.27□□□□□ -1.09
CD44-235ENST00000532339 KRT76Q01546 638 aa8.27□□□□□ -1.09
CD44-235ENST00000532339 WDR44Q5JSH3 913 aa8.27□□□□□ -1.09
CD44-235ENST00000532339 NBPF10Q6P3W6 841 aaKnown RBP8.27□□□□□ -1.09
CD44-235ENST00000532339 NBPF15Q8N660 670 aa8.27□□□□□ -1.09
CD44-235ENST00000532339 GMCL1Q96IK5 515 aa8.27□□□□□ -1.09
CD44-235ENST00000532339 DYRK1BQ9Y463 629 aa8.27□□□□□ -1.09
CD44-235ENST00000532339 CENPCQ03188 943 aa8.26□□□□□ -1.09
CD44-235ENST00000532339 TMEM132AQ24JP5 1023 aa8.26□□□□□ -1.09
CD44-235ENST00000532339 TAS1R3Q7RTX0 852 aa8.26□□□□□ -1.09
CD44-235ENST00000532339 PLPP7Q8NBV4 271 aa8.26□□□□□ -1.09
CD44-235ENST00000532339 XAGE2Q96GT9 111 aa8.26□□□□□ -1.09
CD44-235ENST00000532339 WASLO00401 505 aaPredicted RBP8.25□□□□□ -1.09
CD44-235ENST00000532339 UBTFP17480 764 aaKnown RBP8.25□□□□□ -1.09
CD44-235ENST00000532339 GTF2E1P29083 439 aaPredicted RBP8.25□□□□□ -1.09
CD44-235ENST00000532339 TRIM22Q8IYM9 498 aa8.25□□□□□ -1.09
CD44-235ENST00000532339 POM121Q96HA1 1249 aa8.25□□□□□ -1.09
CD44-235ENST00000532339 CUEDC1Q9NWM3 386 aaPredicted RBP8.25□□□□□ -1.09
CD44-235ENST00000532339 HRH3Q9Y5N1 445 aa8.25□□□□□ -1.09
CD44-235ENST00000532339 H7C1W4 665 aa8.24□□□□□ -1.09
CD44-235ENST00000532339 RNFT1Q5M7Z0 435 aa8.24□□□□□ -1.09
CD44-235ENST00000532339 RIPOR1Q6ZS17 1223 aa8.24□□□□□ -1.09
CD44-235ENST00000532339 ZSCAN10Q96SZ4 725 aaPredicted RBP8.24□□□□□ -1.09
CD44-235ENST00000532339 TIMMDC1Q9NPL8 285 aa8.24□□□□□ -1.09
CD44-235ENST00000532339 GNASQ5JWF2 1037 aa8.23□□□□□ -1.09
CD44-235ENST00000532339 FOXR1Q6PIV2 292 aa8.23□□□□□ -1.09
CD44-235ENST00000532339 ZNF837Q96EG3 531 aaPredicted RBP8.23□□□□□ -1.09
CD44-235ENST00000532339 GAS2L1Q99501 681 aaPredicted RBP8.23□□□□□ -1.09
CD44-235ENST00000532339 ETNK1Q9HBU6 452 aa8.23□□□□□ -1.09
CD44-235ENST00000532339 TMEM214Q6NUQ4 689 aaKnown RBP8.22□□□□□ -1.09
CD44-235ENST00000532339 FHDC1Q9C0D6 1143 aaPredicted RBP8.22□□□□□ -1.09
CD44-235ENST00000532339 ALG2Q9H553 416 aa8.22□□□□□ -1.09
CD44-235ENST00000532339 F11P03951 625 aa8.21□□□□□ -1.1
CD44-235ENST00000532339 PIK3CDO00329 1044 aa8.2□□□□□ -1.1
CD44-235ENST00000532339 LZTS3O60299 673 aaPredicted RBP8.2□□□□□ -1.1
CD44-235ENST00000532339 SLURP2P0DP57 97 aa8.2□□□□□ -1.1
CD44-235ENST00000532339 GDF10P55107 478 aa8.2□□□□□ -1.1
CD44-235ENST00000532339 TLR1Q15399 786 aa8.2□□□□□ -1.1
CD44-235ENST00000532339 DBN1Q16643 649 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms