RNA–Protein interactions for RNA: ENST00000530700.1

USH1C-209, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 403 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-209ENST00000530700 ATRNO75882 1429 aa17.98■□□□□ 0.47
USH1C-209ENST00000530700 NCAPD2Q15021 1401 aa17.98■□□□□ 0.47
USH1C-209ENST00000530700 NWD2Q9ULI1 1742 aa17.98■□□□□ 0.47
USH1C-209ENST00000530700 NCBP3Q53F19 620 aaKnown RBP17.98■□□□□ 0.47
USH1C-209ENST00000530700 ZCRB1Q8TBF4 217 aaKnown RBP17.98■□□□□ 0.47
USH1C-209ENST00000530700 FAM98CQ17RN3 349 aaKnown RBP17.97■□□□□ 0.47
USH1C-209ENST00000530700 ILDR2Q71H61 639 aa17.97■□□□□ 0.47
USH1C-209ENST00000530700 DDB1Q16531 1140 aa17.96■□□□□ 0.47
USH1C-209ENST00000530700 CCDC146Q8IYE0 955 aa17.96■□□□□ 0.47
USH1C-209ENST00000530700 A0A0G2JS52 829 aa17.95■□□□□ 0.46
USH1C-209ENST00000530700 MYT1Q01538 1121 aa17.95■□□□□ 0.46
USH1C-209ENST00000530700 C1orf141Q5JVX7 400 aa17.95■□□□□ 0.46
USH1C-209ENST00000530700 PHACTR3Q96KR7 559 aa17.95■□□□□ 0.46
USH1C-209ENST00000530700 HSP90AB1P08238 724 aaKnown RBP17.94■□□□□ 0.46
USH1C-209ENST00000530700 LMOD3Q0VAK6 560 aa17.94■□□□□ 0.46
USH1C-209ENST00000530700 NFE2L2Q16236 605 aa17.94■□□□□ 0.46
USH1C-209ENST00000530700 IFNL2Q8IZJ0 200 aa17.94■□□□□ 0.46
USH1C-209ENST00000530700 RGS17Q9UGC6 210 aaPredicted RBP17.94■□□□□ 0.46
USH1C-209ENST00000530700 PLCH1Q4KWH8 1693 aa17.93■□□□□ 0.46
USH1C-209ENST00000530700 APAF1O14727 1248 aa17.93■□□□□ 0.46
USH1C-209ENST00000530700 HTATSF1O43719 755 aaKnown RBP17.93■□□□□ 0.46
USH1C-209ENST00000530700 PDE3BQ13370 1112 aa17.93■□□□□ 0.46
USH1C-209ENST00000530700 MTHFSDQ2M296 383 aaKnown RBP17.93■□□□□ 0.46
USH1C-209ENST00000530700 AKAP4Q5JQC9 854 aa17.93■□□□□ 0.46
USH1C-209ENST00000530700 RTF1Q92541 710 aaKnown RBP17.93■□□□□ 0.46
USH1C-209ENST00000530700 TMPOP42166 694 aaKnown RBP17.92■□□□□ 0.46
USH1C-209ENST00000530700 RIPK4P57078 832 aa17.92■□□□□ 0.46
USH1C-209ENST00000530700 ZNF530Q6P9A1 599 aaPredicted RBP17.92■□□□□ 0.46
USH1C-209ENST00000530700 FAM208AQ9UK61 1670 aaKnown RBP17.92■□□□□ 0.46
USH1C-209ENST00000530700 PCDH11XQ9BZA7 1347 aa17.92■□□□□ 0.46
USH1C-209ENST00000530700 PCDH11YQ9BZA8 1340 aa17.92■□□□□ 0.46
USH1C-209ENST00000530700 GNAT3A8MTJ3 354 aa17.91■□□□□ 0.46
USH1C-209ENST00000530700 SEPT12Q8IYM1 358 aa17.91■□□□□ 0.46
USH1C-209ENST00000530700 OVOS2A0A0G2JMS6 1433 aa17.9■□□□□ 0.46
USH1C-209ENST00000530700 RGPD5Q99666 1765 aa17.9■□□□□ 0.46
USH1C-209ENST00000530700 POTEAQ6S8J7 498 aa17.9■□□□□ 0.46
USH1C-209ENST00000530700 DDX54Q8TDD1 881 aaKnown RBP17.9■□□□□ 0.46
USH1C-209ENST00000530700 DISP2A7MBM2 1401 aa17.89■□□□□ 0.46
USH1C-209ENST00000530700 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.89■□□□□ 0.46
USH1C-209ENST00000530700 NEUROD2Q15784 382 aa17.89■□□□□ 0.45
USH1C-209ENST00000530700 CCDC27Q2M243 656 aa17.89■□□□□ 0.45
USH1C-209ENST00000530700 NRAPQ86VF7 1730 aa17.89■□□□□ 0.45
USH1C-209ENST00000530700 PHKG2P15735 406 aa17.88■□□□□ 0.45
USH1C-209ENST00000530700 CALD1Q05682 793 aaKnown RBP17.88■□□□□ 0.45
USH1C-209ENST00000530700 RGPD1P0DJD0 1748 aa17.88■□□□□ 0.45
USH1C-209ENST00000530700 NKX1-1Q15270 411 aaPredicted RBP17.87■□□□□ 0.45
USH1C-209ENST00000530700 DCAF5Q96JK2 942 aa17.87■□□□□ 0.45
USH1C-209ENST00000530700 MEGF6O75095 1541 aa17.87■□□□□ 0.45
USH1C-209ENST00000530700 CYP27B1O15528 508 aa17.86■□□□□ 0.45
USH1C-209ENST00000530700 HNRNPUQ00839 825 aaKnown RBP eCLIP17.86■□□□□ 0.45
USH1C-209ENST00000530700 SOCS7O14512 581 aa17.85■□□□□ 0.45
USH1C-209ENST00000530700 KRT27Q7Z3Y8 459 aa17.85■□□□□ 0.45
USH1C-209ENST00000530700 RRP7AQ9Y3A4 280 aaKnown RBP17.85■□□□□ 0.45
USH1C-209ENST00000530700 MAP3K5Q99683 1374 aa17.83■□□□□ 0.45
USH1C-209ENST00000530700 ERVV-2B6SEH9 535 aa17.83■□□□□ 0.44
USH1C-209ENST00000530700 WDR63Q8IWG1 891 aa17.83■□□□□ 0.44
USH1C-209ENST00000530700 TNS2Q63HR2 1409 aa17.82■□□□□ 0.44
USH1C-209ENST00000530700 MPRIPQ6WCQ1 1025 aa17.82■□□□□ 0.44
USH1C-209ENST00000530700 WWC1Q8IX03 1113 aa17.82■□□□□ 0.44
USH1C-209ENST00000530700 MARCH10Q8NA82 808 aaPredicted RBP17.82■□□□□ 0.44
USH1C-209ENST00000530700 TRIM35Q9UPQ4 493 aa17.82■□□□□ 0.44
USH1C-209ENST00000530700 SALL2Q9Y467 1007 aaPredicted RBP17.82■□□□□ 0.44
USH1C-209ENST00000530700 RNMTO43148 476 aaKnown RBP17.81■□□□□ 0.44
USH1C-209ENST00000530700 TEFQ10587 303 aa17.81■□□□□ 0.44
USH1C-209ENST00000530700 FAM196AQ6ZSG2 479 aa17.81■□□□□ 0.44
USH1C-209ENST00000530700 GLI3P10071 1580 aa17.8■□□□□ 0.44
USH1C-209ENST00000530700 CABP4P57796 275 aa17.8■□□□□ 0.44
USH1C-209ENST00000530700 IL17REQ8NFR9 667 aa17.8■□□□□ 0.44
USH1C-209ENST00000530700 MCM10Q7L590 875 aa17.79■□□□□ 0.44
USH1C-209ENST00000530700 LGR6Q9HBX8 967 aa17.79■□□□□ 0.44
USH1C-209ENST00000530700 BABAM1Q9NWV8 329 aa17.79■□□□□ 0.44
USH1C-209ENST00000530700 RGPD2P0DJD1 1756 aa17.79■□□□□ 0.44
USH1C-209ENST00000530700 TAF7Q15545 349 aaPredicted RBP17.78■□□□□ 0.44
USH1C-209ENST00000530700 IL16Q14005 1332 aa17.77■□□□□ 0.44
USH1C-209ENST00000530700 GOLGA2Q08379 1002 aa17.77■□□□□ 0.44
USH1C-209ENST00000530700 ZBED9Q6R2W3 1325 aa17.76■□□□□ 0.43
USH1C-209ENST00000530700 PARP4Q9UKK3 1724 aaKnown RBP17.76■□□□□ 0.43
USH1C-209ENST00000530700 BCL9O00512 1426 aa17.76■□□□□ 0.43
USH1C-209ENST00000530700 GNAI1P63096 354 aa17.76■□□□□ 0.43
USH1C-209ENST00000530700 DCTN1Q14203 1278 aa17.76■□□□□ 0.43
USH1C-209ENST00000530700 SLC52A2Q9HAB3 445 aa17.76■□□□□ 0.43
USH1C-209ENST00000530700 CEMIPQ8WUJ3 1361 aa17.76■□□□□ 0.43
USH1C-209ENST00000530700 NFATC2IPQ8NCF5 419 aa17.75■□□□□ 0.43
USH1C-209ENST00000530700 CFAP44Q96MT7 982 aa17.75■□□□□ 0.43
USH1C-209ENST00000530700 YTHDC1Q96MU7 727 aaKnown RBP17.75■□□□□ 0.43
USH1C-209ENST00000530700 TMOD3Q9NYL9 352 aa17.75■□□□□ 0.43
USH1C-209ENST00000530700 SENP3-EIF4A1A0A087X0R7 540 aa17.74■□□□□ 0.43
USH1C-209ENST00000530700 MYH16Q9H6N6 1097 aa17.74■□□□□ 0.43
USH1C-209ENST00000530700 IFT57Q9NWB7 429 aa17.74■□□□□ 0.43
USH1C-209ENST00000530700 ZNF521Q96K83 1311 aa17.73■□□□□ 0.43
USH1C-209ENST00000530700 BTBD11A6QL63 1104 aa17.73■□□□□ 0.43
USH1C-209ENST00000530700 E9PSI1 815 aa17.73■□□□□ 0.43
USH1C-209ENST00000530700 PRIM1P49642 420 aaKnown RBP17.73■□□□□ 0.43
USH1C-209ENST00000530700 SYTL4Q96C24 671 aaPredicted RBP17.73■□□□□ 0.43
USH1C-209ENST00000530700 THSD7AQ9UPZ6 1657 aa17.72■□□□□ 0.43
USH1C-209ENST00000530700 LAS1LQ9Y4W2 734 aaKnown RBP17.72■□□□□ 0.43
USH1C-209ENST00000530700 RGS12O14924 1447 aa17.72■□□□□ 0.43
USH1C-209ENST00000530700 CHL1O00533 1208 aa17.71■□□□□ 0.43
USH1C-209ENST00000530700 HMGB2P26583 209 aaKnown RBP17.71■□□□□ 0.43
USH1C-209ENST00000530700 ACSBG1Q96GR2 724 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms