RNA–Protein interactions for RNA: ENST00000527413.1

SSSCA1-204, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 2

Gene SSSCA1, Length 532 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-204ENST00000527413 NBPF4Q96M43 638 aa18.83■□□□□ 0.6
SSSCA1-204ENST00000527413 PKD1L3Q7Z443 1732 aa18.83■□□□□ 0.6
SSSCA1-204ENST00000527413 TXNRD1Q16881 649 aa18.82■□□□□ 0.6
SSSCA1-204ENST00000527413 EMILIN1Q9Y6C2 1016 aa18.82■□□□□ 0.6
SSSCA1-204ENST00000527413 USHBP1Q8N6Y0 703 aa18.81■□□□□ 0.6
SSSCA1-204ENST00000527413 DDX54Q8TDD1 881 aaKnown RBP18.81■□□□□ 0.6
SSSCA1-204ENST00000527413 LY75O60449 1722 aa18.8■□□□□ 0.6
SSSCA1-204ENST00000527413 ZCRB1Q8TBF4 217 aaKnown RBP18.79■□□□□ 0.6
SSSCA1-204ENST00000527413 NCAPD2Q15021 1401 aa18.78■□□□□ 0.6
SSSCA1-204ENST00000527413 RAPGEF4Q8WZA2 1011 aa18.78■□□□□ 0.6
SSSCA1-204ENST00000527413 QSER1Q2KHR3 1735 aa18.77■□□□□ 0.6
SSSCA1-204ENST00000527413 TOGARAM1Q9Y4F4 1720 aa18.77■□□□□ 0.59
SSSCA1-204ENST00000527413 TATP17735 454 aaPredicted RBP18.76■□□□□ 0.59
SSSCA1-204ENST00000527413 STK32BQ9NY57 414 aa18.76■□□□□ 0.59
SSSCA1-204ENST00000527413 ITGB4P16144 1822 aa18.76■□□□□ 0.59
SSSCA1-204ENST00000527413 TUBGCP6Q96RT7 1819 aa18.76■□□□□ 0.59
SSSCA1-204ENST00000527413 PPM1GO15355 546 aaPredicted RBP18.75■□□□□ 0.59
SSSCA1-204ENST00000527413 PANK3Q9H999 370 aa18.75■□□□□ 0.59
SSSCA1-204ENST00000527413 SPON1Q9HCB6 807 aa18.75■□□□□ 0.59
SSSCA1-204ENST00000527413 NSD2O96028 1365 aa18.75■□□□□ 0.59
SSSCA1-204ENST00000527413 WASHC2AQ641Q2 1341 aa18.74■□□□□ 0.59
SSSCA1-204ENST00000527413 SLC15A2Q16348 729 aa18.74■□□□□ 0.59
SSSCA1-204ENST00000527413 PCDH11XQ9BZA7 1347 aa18.74■□□□□ 0.59
SSSCA1-204ENST00000527413 PCDH11YQ9BZA8 1340 aa18.74■□□□□ 0.59
SSSCA1-204ENST00000527413 SYTL4Q96C24 671 aaPredicted RBP18.73■□□□□ 0.59
SSSCA1-204ENST00000527413 POLKQ9UBT6 870 aa18.73■□□□□ 0.59
SSSCA1-204ENST00000527413 PRIM1P49642 420 aaKnown RBP18.72■□□□□ 0.59
SSSCA1-204ENST00000527413 PDGFDQ9GZP0 370 aaPredicted RBP18.72■□□□□ 0.59
SSSCA1-204ENST00000527413 TNNT2P45379 298 aaPredicted RBP18.7■□□□□ 0.58
SSSCA1-204ENST00000527413 LRRC4BQ9NT99 713 aa18.7■□□□□ 0.58
SSSCA1-204ENST00000527413 PPP1R1BQ9UD71 204 aaPredicted RBP18.69■□□□□ 0.58
SSSCA1-204ENST00000527413 TAF1LQ8IZX4 1826 aa18.69■□□□□ 0.58
SSSCA1-204ENST00000527413 C5P01031 1676 aa18.69■□□□□ 0.58
SSSCA1-204ENST00000527413 ZNF827Q17R98 1081 aa18.68■□□□□ 0.58
SSSCA1-204ENST00000527413 SLC27A3Q5K4L6 730 aa18.68■□□□□ 0.58
SSSCA1-204ENST00000527413 EYA1Q99502 592 aa18.68■□□□□ 0.58
SSSCA1-204ENST00000527413 KIF7Q2M1P5 1343 aa18.68■□□□□ 0.58
SSSCA1-204ENST00000527413 CYP27B1O15528 508 aa18.67■□□□□ 0.58
SSSCA1-204ENST00000527413 ZBTB7AO95365 584 aa18.67■□□□□ 0.58
SSSCA1-204ENST00000527413 EIF4A2Q14240 407 aaKnown RBP18.66■□□□□ 0.58
SSSCA1-204ENST00000527413 COL24A1Q17RW2 1714 aa18.66■□□□□ 0.58
SSSCA1-204ENST00000527413 KNSTRNQ9Y448 316 aa18.65■□□□□ 0.58
SSSCA1-204ENST00000527413 MORC1Q86VD1 984 aa18.64■□□□□ 0.57
SSSCA1-204ENST00000527413 AKT1S1Q96B36 256 aa18.64■□□□□ 0.57
SSSCA1-204ENST00000527413 SPG7Q9UQ90 795 aa18.64■□□□□ 0.57
SSSCA1-204ENST00000527413 PLEKHG2Q9H7P9 1386 aa18.64■□□□□ 0.57
SSSCA1-204ENST00000527413 PTGER2P43116 358 aa18.63■□□□□ 0.57
SSSCA1-204ENST00000527413 KCNQ4P56696 695 aa18.63■□□□□ 0.57
SSSCA1-204ENST00000527413 MTFR1LQ9H019 292 aa18.63■□□□□ 0.57
SSSCA1-204ENST00000527413 ATF5Q9Y2D1 282 aaPredicted RBP18.63■□□□□ 0.57
SSSCA1-204ENST00000527413 IGSF1Q8N6C5 1336 aa18.63■□□□□ 0.57
SSSCA1-204ENST00000527413 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.62■□□□□ 0.57
SSSCA1-204ENST00000527413 CCNL1Q9UK58 526 aaPredicted RBP18.62■□□□□ 0.57
SSSCA1-204ENST00000527413 PALLDQ8WX93 1383 aa18.61■□□□□ 0.57
SSSCA1-204ENST00000527413 PNPLA7Q6ZV29 1317 aa18.6■□□□□ 0.57
SSSCA1-204ENST00000527413 NKX1-1Q15270 411 aaPredicted RBP18.6■□□□□ 0.57
SSSCA1-204ENST00000527413 AMER1Q5JTC6 1135 aaPredicted RBP18.6■□□□□ 0.57
SSSCA1-204ENST00000527413 MPRIPQ6WCQ1 1025 aa18.6■□□□□ 0.57
SSSCA1-204ENST00000527413 SGIP1Q9BQI5 828 aa18.59■□□□□ 0.57
SSSCA1-204ENST00000527413 C4BP0C0L5 1744 aa18.59■□□□□ 0.57
SSSCA1-204ENST00000527413 UBR3Q6ZT12 1888 aa18.57■□□□□ 0.56
SSSCA1-204ENST00000527413 PHKG2P15735 406 aa18.57■□□□□ 0.56
SSSCA1-204ENST00000527413 IFNL2Q8IZJ0 200 aa18.57■□□□□ 0.56
SSSCA1-204ENST00000527413 TFCP2L1Q9NZI6 479 aa18.57■□□□□ 0.56
SSSCA1-204ENST00000527413 VIRMAQ69YN4 1812 aaKnown RBP18.56■□□□□ 0.56
SSSCA1-204ENST00000527413 SLC16A10Q8TF71 515 aa18.55■□□□□ 0.56
SSSCA1-204ENST00000527413 PIGBQ92521 554 aa18.55■□□□□ 0.56
SSSCA1-204ENST00000527413 SMARCC1Q92922 1105 aaPredicted RBP18.55■□□□□ 0.56
SSSCA1-204ENST00000527413 PER1O15534 1290 aaPredicted RBP18.54■□□□□ 0.56
SSSCA1-204ENST00000527413 SCN11AQ9UI33 1791 aa18.53■□□□□ 0.56
SSSCA1-204ENST00000527413 FHDC1Q9C0D6 1143 aaPredicted RBP18.53■□□□□ 0.56
SSSCA1-204ENST00000527413 TMOD3Q9NYL9 352 aa18.53■□□□□ 0.56
SSSCA1-204ENST00000527413 ZNF831Q5JPB2 1677 aa18.53■□□□□ 0.56
SSSCA1-204ENST00000527413 KDRP35968 1356 aa18.53■□□□□ 0.56
SSSCA1-204ENST00000527413 AEBP1Q8IUX7 1158 aa18.52■□□□□ 0.56
SSSCA1-204ENST00000527413 ARXQ96QS3 562 aa18.52■□□□□ 0.56
SSSCA1-204ENST00000527413 KDM6AO15550 1401 aaPredicted RBP18.51■□□□□ 0.55
SSSCA1-204ENST00000527413 HMGB2P26583 209 aaKnown RBP18.51■□□□□ 0.55
SSSCA1-204ENST00000527413 PLEKHO1Q53GL0 409 aaPredicted RBP18.51■□□□□ 0.55
SSSCA1-204ENST00000527413 MAP3K5Q99683 1374 aa18.51■□□□□ 0.55
SSSCA1-204ENST00000527413 COL5A3P25940 1745 aaPredicted RBP18.51■□□□□ 0.55
SSSCA1-204ENST00000527413 IL13P35225 146 aa18.5■□□□□ 0.55
SSSCA1-204ENST00000527413 AMOTQ4VCS5 1084 aa18.5■□□□□ 0.55
SSSCA1-204ENST00000527413 CC2D1BQ5T0F9 858 aaKnown RBP18.5■□□□□ 0.55
SSSCA1-204ENST00000527413 ZNF530Q6P9A1 599 aaPredicted RBP18.5■□□□□ 0.55
SSSCA1-204ENST00000527413 SYT17Q9BSW7 474 aa18.5■□□□□ 0.55
SSSCA1-204ENST00000527413 NPC1L1Q9UHC9 1359 aa18.5■□□□□ 0.55
SSSCA1-204ENST00000527413 DCAF8L1A6NGE4 600 aa18.49■□□□□ 0.55
SSSCA1-204ENST00000527413 POLD1P28340 1107 aa18.49■□□□□ 0.55
SSSCA1-204ENST00000527413 SULT6B1Q6IMI4 303 aa18.49■□□□□ 0.55
SSSCA1-204ENST00000527413 COL23A1Q86Y22 540 aaPredicted RBP18.49■□□□□ 0.55
SSSCA1-204ENST00000527413 HSP90AB1P08238 724 aaKnown RBP18.48■□□□□ 0.55
SSSCA1-204ENST00000527413 MTHFSP49914 203 aa18.48■□□□□ 0.55
SSSCA1-204ENST00000527413 DCAF5Q96JK2 942 aa18.48■□□□□ 0.55
SSSCA1-204ENST00000527413 ASAP1Q9ULH1 1129 aa18.48■□□□□ 0.55
SSSCA1-204ENST00000527413 COL3A1P02461 1466 aaPredicted RBP18.47■□□□□ 0.55
SSSCA1-204ENST00000527413 LOC102724428A0A0B4J2F2 783 aa18.47■□□□□ 0.55
SSSCA1-204ENST00000527413 MSH5O43196 834 aa18.47■□□□□ 0.55
SSSCA1-204ENST00000527413 SIK1P57059 783 aa18.47■□□□□ 0.55
SSSCA1-204ENST00000527413 CHD4Q14839 1912 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms