RNA–Protein interactions for RNA: ENST00000519054.5

SKP1-205, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 654 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-205ENST00000519054 ZMYND15Q9H091 742 aa7.78□□□□□ -1.16
SKP1-205ENST00000519054 OSBPL3Q9H4L5 887 aa7.78□□□□□ -1.16
SKP1-205ENST00000519054 CHIC2Q9UKJ5 165 aa7.78□□□□□ -1.16
SKP1-205ENST00000519054 SOBPA7XYQ1 873 aa7.77□□□□□ -1.17
SKP1-205ENST00000519054 SPINT1O43278 529 aa7.77□□□□□ -1.17
SKP1-205ENST00000519054 PTGIRP43119 386 aa7.77□□□□□ -1.17
SKP1-205ENST00000519054 INSM2Q96T92 566 aaPredicted RBP7.77□□□□□ -1.17
SKP1-205ENST00000519054 ZNF777Q9ULD5 760 aaPredicted RBP7.77□□□□□ -1.17
SKP1-205ENST00000519054 USP4Q13107 963 aa7.76□□□□□ -1.17
SKP1-205ENST00000519054 MAP7D1Q3KQU3 841 aa7.76□□□□□ -1.17
SKP1-205ENST00000519054 CYP2U1Q7Z449 544 aa7.76□□□□□ -1.17
SKP1-205ENST00000519054 CALR3Q96L12 384 aaKnown RBP7.76□□□□□ -1.17
SKP1-205ENST00000519054 UCN2Q96RP3 112 aa7.76□□□□□ -1.17
SKP1-205ENST00000519054 POLMQ9NP87 494 aaPredicted RBP7.76□□□□□ -1.17
SKP1-205ENST00000519054 CTSOP43234 321 aaPredicted RBP7.75□□□□□ -1.17
SKP1-205ENST00000519054 TBC1D9Q6ZT07 1266 aa7.75□□□□□ -1.17
SKP1-205ENST00000519054 NFATC2IPQ8NCF5 419 aa7.75□□□□□ -1.17
SKP1-205ENST00000519054 SOS2Q07890 1332 aaPredicted RBP7.75□□□□□ -1.17
SKP1-205ENST00000519054 TTLL8A6PVC2 850 aa7.74□□□□□ -1.17
SKP1-205ENST00000519054 MEN1O00255 615 aa7.74□□□□□ -1.17
SKP1-205ENST00000519054 MAN1A2O60476 641 aa7.74□□□□□ -1.17
SKP1-205ENST00000519054 C14orf37Q86TY3 774 aa7.74□□□□□ -1.17
SKP1-205ENST00000519054 DEPDC4Q8N2C3 294 aa7.74□□□□□ -1.17
SKP1-205ENST00000519054 ARHGEF10LQ9HCE6 1279 aa7.74□□□□□ -1.17
SKP1-205ENST00000519054 A0A1W2PRU2 124 aa7.73□□□□□ -1.17
SKP1-205ENST00000519054 FIGNL2A6NMB9 653 aa7.73□□□□□ -1.17
SKP1-205ENST00000519054 USP17L5A8MUK1 530 aa7.73□□□□□ -1.17
SKP1-205ENST00000519054 NCOA4Q13772 614 aa7.73□□□□□ -1.17
SKP1-205ENST00000519054 SIRT1Q96EB6 747 aa7.73□□□□□ -1.17
SKP1-205ENST00000519054 RAB6BQ9NRW1 208 aa7.73□□□□□ -1.17
SKP1-205ENST00000519054 DNMT3LQ9UJW3 386 aa7.73□□□□□ -1.17
SKP1-205ENST00000519054 STAU1O95793 577 aaKnown RBP7.72□□□□□ -1.17
SKP1-205ENST00000519054 EML3Q32P44 896 aa7.72□□□□□ -1.17
SKP1-205ENST00000519054 ATP9BO43861 1147 aa7.71□□□□□ -1.18
SKP1-205ENST00000519054 GNRH1P01148 92 aa7.71□□□□□ -1.18
SKP1-205ENST00000519054 TFIP11Q9UBB9 837 aaKnown RBP7.71□□□□□ -1.18
SKP1-205ENST00000519054 USP17L3A6NCW0 530 aa7.7□□□□□ -1.18
SKP1-205ENST00000519054 USP17L4A6NCW7 530 aa7.7□□□□□ -1.18
SKP1-205ENST00000519054 CLN3Q13286 438 aa7.7□□□□□ -1.18
SKP1-205ENST00000519054 FOXD4L5Q5VV16 416 aaPredicted RBP7.7□□□□□ -1.18
SKP1-205ENST00000519054 USP17L2Q6R6M4 530 aa7.7□□□□□ -1.18
SKP1-205ENST00000519054 USP17L1Q7RTZ2 530 aa7.7□□□□□ -1.18
SKP1-205ENST00000519054 RNF217Q8TC41 542 aa7.7□□□□□ -1.18
SKP1-205ENST00000519054 ZNF775Q96BV0 537 aaPredicted RBP7.7□□□□□ -1.18
SKP1-205ENST00000519054 NLRP3Q96P20 1036 aa7.7□□□□□ -1.18
SKP1-205ENST00000519054 NOD1Q9Y239 953 aa7.7□□□□□ -1.18
SKP1-205ENST00000519054 PALM3A6NDB9 673 aaPredicted RBP7.69□□□□□ -1.18
SKP1-205ENST00000519054 LZTS3O60299 673 aaPredicted RBP7.69□□□□□ -1.18
SKP1-205ENST00000519054 IL2RAP01589 272 aa7.69□□□□□ -1.18
SKP1-205ENST00000519054 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.69□□□□□ -1.186e-7■□□□□ 11.1
SKP1-205ENST00000519054 ARID3CA6NKF2 412 aa7.68□□□□□ -1.18
SKP1-205ENST00000519054 RNF144AP50876 292 aaPredicted RBP7.68□□□□□ -1.18
SKP1-205ENST00000519054 PLEKHM2Q8IWE5 1019 aa7.68□□□□□ -1.18
SKP1-205ENST00000519054 CNKSR1Q969H4 720 aa7.68□□□□□ -1.18
SKP1-205ENST00000519054 PPP1R12CQ9BZL4 782 aa7.68□□□□□ -1.18
SKP1-205ENST00000519054 ETNK1Q9HBU6 452 aa7.68□□□□□ -1.18
SKP1-205ENST00000519054 MAFBQ9Y5Q3 323 aaPredicted RBP7.68□□□□□ -1.18
SKP1-205ENST00000519054 GTF2IP78347 998 aa7.67□□□□□ -1.18
SKP1-205ENST00000519054 PSME1Q06323 249 aa7.67□□□□□ -1.18
SKP1-205ENST00000519054 ESCO1Q5FWF5 840 aa7.67□□□□□ -1.18
SKP1-205ENST00000519054 SLC27A3Q5K4L6 730 aa7.67□□□□□ -1.18
SKP1-205ENST00000519054 PRICKLE2Q7Z3G6 844 aa7.67□□□□□ -1.18
SKP1-205ENST00000519054 ESYT1Q9BSJ8 1104 aa7.67□□□□□ -1.18
SKP1-205ENST00000519054 PCDHGA11Q9Y5H2 935 aa7.67□□□□□ -1.18
SKP1-205ENST00000519054 VEGFBP49765 207 aa7.66□□□□□ -1.18
SKP1-205ENST00000519054 SCNN1DP51172 638 aa7.66□□□□□ -1.18
SKP1-205ENST00000519054 GDF10P55107 478 aa7.66□□□□□ -1.18
SKP1-205ENST00000519054 LYSMD3Q7Z3D4 306 aa7.66□□□□□ -1.18
SKP1-205ENST00000519054 XAGE2Q96GT9 111 aa7.66□□□□□ -1.18
SKP1-205ENST00000519054 LMOD1P29536 600 aaPredicted RBP7.65□□□□□ -1.18
SKP1-205ENST00000519054 GPC1P35052 558 aa7.65□□□□□ -1.18
SKP1-205ENST00000519054 CENPCQ03188 943 aa7.65□□□□□ -1.18
SKP1-205ENST00000519054 PTSQ03393 145 aa7.65□□□□□ -1.18
SKP1-205ENST00000519054 NXF1Q9UBU9 619 aaKnown RBP7.65□□□□□ -1.18
SKP1-205ENST00000519054 MKRN1Q9UHC7 482 aaKnown RBP7.65□□□□□ -1.18
SKP1-205ENST00000519054 INHAP05111 366 aa7.64□□□□□ -1.19
SKP1-205ENST00000519054 RHOQP17081 205 aa7.64□□□□□ -1.19
SKP1-205ENST00000519054 TRIM50Q86XT4 487 aa7.64□□□□□ -1.19
SKP1-205ENST00000519054 GRIP2Q9C0E4 1043 aa7.64□□□□□ -1.19
SKP1-205ENST00000519054 SERTAD1Q9UHV2 236 aa7.64□□□□□ -1.19
SKP1-205ENST00000519054 HRH3Q9Y5N1 445 aa7.64□□□□□ -1.19
SKP1-205ENST00000519054 TMEM229AB2RXF0 380 aa7.63□□□□□ -1.19
SKP1-205ENST00000519054 TERTO14746 1132 aaKnown RBP7.63□□□□□ -1.19
SKP1-205ENST00000519054 CLDN10P78369 228 aa7.63□□□□□ -1.19
SKP1-205ENST00000519054 POU4F2Q12837 409 aa7.63□□□□□ -1.19
SKP1-205ENST00000519054 TLR1Q15399 786 aa7.63□□□□□ -1.19
SKP1-205ENST00000519054 CFAP70Q5T0N1 1121 aa7.63□□□□□ -1.19
SKP1-205ENST00000519054 OGFOD1Q8N543 542 aa7.63□□□□□ -1.19
SKP1-205ENST00000519054 KIAA1024Q9UPX6 916 aa7.63□□□□□ -1.19
SKP1-205ENST00000519054 RFX1P22670 979 aa7.62□□□□□ -1.19
SKP1-205ENST00000519054 ATP1A2P50993 1020 aa7.62□□□□□ -1.19
SKP1-205ENST00000519054 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.62□□□□□ -1.193e-6■■■■■ 28.6
SKP1-205ENST00000519054 TPCN2Q8NHX9 752 aa7.62□□□□□ -1.19
SKP1-205ENST00000519054 ZNF594Q96JF6 807 aaPredicted RBP7.62□□□□□ -1.19
SKP1-205ENST00000519054 ZSCAN10Q96SZ4 725 aaPredicted RBP7.62□□□□□ -1.19
SKP1-205ENST00000519054 FHDC1Q9C0D6 1143 aaPredicted RBP7.62□□□□□ -1.19
SKP1-205ENST00000519054 DNAAF2Q9NVR5 837 aaKnown RBP7.62□□□□□ -1.19
SKP1-205ENST00000519054 ZBTB7BO15156 539 aaPredicted RBP7.61□□□□□ -1.19
SKP1-205ENST00000519054 PPFIA3O75145 1194 aa7.61□□□□□ -1.19
SKP1-205ENST00000519054 RASA1P20936 1047 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms