RNA–Protein interactions for RNA: ENST00000518930.1

PCM1-209, Transcript of pericentriolar material 1, human

TSL 3

Gene PCM1, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-209	ENST00000518930	PKD1L3	Q7Z443	1732 aa		32.37	■■■□□ 2.77
PCM1-209	ENST00000518930	PLEKHG2	Q9H7P9	1386 aa		32.36	■■■□□ 2.77
PCM1-209	ENST00000518930	EXOC5	O00471	708 aa		32.36	■■■□□ 2.77
PCM1-209	ENST00000518930	PDE3B	Q13370	1112 aa		32.35	■■■□□ 2.77
PCM1-209	ENST00000518930	WDR43	Q15061	677 aa	Known RBP eCLIP	32.35	■■■□□ 2.77
PCM1-209	ENST00000518930	MRS2	Q9HD23	443 aa		32.35	■■■□□ 2.77
PCM1-209	ENST00000518930	SHANK3	Q9BYB0	1731 aa		32.32	■■■□□ 2.76
PCM1-209	ENST00000518930	KRT27	Q7Z3Y8	459 aa		32.32	■■■□□ 2.76
PCM1-209	ENST00000518930	ZCRB1	Q8TBF4	217 aa	Known RBP	32.31	■■■□□ 2.76
PCM1-209	ENST00000518930	CCDC184	Q52MB2	194 aa		32.29	■■■□□ 2.76
PCM1-209	ENST00000518930	SPG7	Q9UQ90	795 aa		32.29	■■■□□ 2.76
PCM1-209	ENST00000518930	RSPH6A	Q9H0K4	717 aa		32.28	■■■□□ 2.76
PCM1-209	ENST00000518930	PCDH11X	Q9BZA7	1347 aa		32.27	■■■□□ 2.76
PCM1-209	ENST00000518930	PCDH11Y	Q9BZA8	1340 aa		32.27	■■■□□ 2.76
PCM1-209	ENST00000518930	FCHSD2	O94868	740 aa		32.27	■■■□□ 2.76
PCM1-209	ENST00000518930	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	32.27	■■■□□ 2.76	5e-9	■■□□□ 14.5
PCM1-209	ENST00000518930	PRKAR2B	P31323	418 aa		32.26	■■■□□ 2.75
PCM1-209	ENST00000518930	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.26	■■■□□ 2.75
PCM1-209	ENST00000518930	AMOT	Q4VCS5	1084 aa		32.25	■■■□□ 2.75
PCM1-209	ENST00000518930	PNN	Q9H307	717 aa	Known RBP	32.25	■■■□□ 2.75
PCM1-209	ENST00000518930	NEFM	P07197	916 aa		32.24	■■■□□ 2.75
PCM1-209	ENST00000518930	DDX54	Q8TDD1	881 aa	Known RBP	32.24	■■■□□ 2.75
PCM1-209	ENST00000518930	CCER2	I3L3R5	266 aa		32.23	■■■□□ 2.75
PCM1-209	ENST00000518930	ILDR2	Q71H61	639 aa		32.22	■■■□□ 2.75
PCM1-209	ENST00000518930	MIER1	Q8N108	512 aa		32.22	■■■□□ 2.75
PCM1-209	ENST00000518930	MARCH10	Q8NA82	808 aa	Predicted RBP	32.21	■■■□□ 2.75
PCM1-209	ENST00000518930	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.19	■■■□□ 2.74
PCM1-209	ENST00000518930	MAPK8IP3	Q9UPT6	1336 aa		32.19	■■■□□ 2.74
PCM1-209	ENST00000518930	FAM182B	Q5T319	152 aa		32.18	■■■□□ 2.74
PCM1-209	ENST00000518930	ADAMTS8	Q9UP79	889 aa		32.18	■■■□□ 2.74
PCM1-209	ENST00000518930	C1orf141	Q5JVX7	400 aa		32.16	■■■□□ 2.74
PCM1-209	ENST00000518930	IFNL2	Q8IZJ0	200 aa		32.16	■■■□□ 2.74
PCM1-209	ENST00000518930	PNISR	Q8TF01	805 aa	Known RBP	32.16	■■■□□ 2.74
PCM1-209	ENST00000518930	CYP27B1	O15528	508 aa		32.15	■■■□□ 2.74
PCM1-209	ENST00000518930	FAM196A	Q6ZSG2	479 aa		32.15	■■■□□ 2.74
PCM1-209	ENST00000518930	GAS2L2	Q8NHY3	880 aa		32.15	■■■□□ 2.74
PCM1-209	ENST00000518930	PHKG2	P15735	406 aa		32.13	■■■□□ 2.73
PCM1-209	ENST00000518930	MTHFSD	Q2M296	383 aa	Known RBP	32.13	■■■□□ 2.73
PCM1-209	ENST00000518930	DOT1L	Q8TEK3	1739 aa		32.13	■■■□□ 2.73
PCM1-209	ENST00000518930	PHACTR3	Q96KR7	559 aa		32.13	■■■□□ 2.73
PCM1-209	ENST00000518930	PLEKHF1	Q96S99	279 aa		32.13	■■■□□ 2.73
PCM1-209	ENST00000518930	BCL9	O00512	1426 aa		32.12	■■■□□ 2.73
PCM1-209	ENST00000518930	SBF2	Q86WG5	1849 aa		32.1	■■■□□ 2.73
PCM1-209	ENST00000518930	HSP90AB1	P08238	724 aa	Known RBP	32.1	■■■□□ 2.73
PCM1-209	ENST00000518930	AKAP4	Q5JQC9	854 aa		32.1	■■■□□ 2.73
PCM1-209	ENST00000518930	CCDC146	Q8IYE0	955 aa		32.1	■■■□□ 2.73
PCM1-209	ENST00000518930	RUNDC1	Q96C34	613 aa		32.1	■■■□□ 2.73
PCM1-209	ENST00000518930	FAM9B	Q8IZU0	186 aa		32.08	■■■□□ 2.73
PCM1-209	ENST00000518930	NHS	Q6T4R5	1651 aa		32.08	■■■□□ 2.73
PCM1-209	ENST00000518930	MAP3K5	Q99683	1374 aa		32.07	■■■□□ 2.73
PCM1-209	ENST00000518930	EP400	Q96L91	3159 aa		32.07	■■■□□ 2.73
PCM1-209	ENST00000518930	TOGARAM1	Q9Y4F4	1720 aa		32.06	■■■□□ 2.72
PCM1-209	ENST00000518930	VIRMA	Q69YN4	1812 aa	Known RBP	32.06	■■■□□ 2.72
PCM1-209	ENST00000518930	NKX1-1	Q15270	411 aa	Predicted RBP	32.05	■■■□□ 2.72
PCM1-209	ENST00000518930	KAT6B	Q8WYB5	2073 aa		32.04	■■■□□ 2.72
PCM1-209	ENST00000518930	DLG5	Q8TDM6	1919 aa		32.04	■■■□□ 2.72
PCM1-209	ENST00000518930	DCAF5	Q96JK2	942 aa		32.04	■■■□□ 2.72
PCM1-209	ENST00000518930	SCN11A	Q9UI33	1791 aa		32.04	■■■□□ 2.72
PCM1-209	ENST00000518930	NFE2L2	Q16236	605 aa		32.03	■■■□□ 2.72
PCM1-209	ENST00000518930	GNAT3	A8MTJ3	354 aa		32.02	■■■□□ 2.72
PCM1-209	ENST00000518930	ACSBG1	Q96GR2	724 aa		32.02	■■■□□ 2.72
PCM1-209	ENST00000518930	KDM6A	O15550	1401 aa	Predicted RBP	32.01	■■■□□ 2.72
PCM1-209	ENST00000518930	ITGB4	P16144	1822 aa		32	■■■□□ 2.71
PCM1-209	ENST00000518930	MPRIP	Q6WCQ1	1025 aa		32	■■■□□ 2.71
PCM1-209	ENST00000518930	TNS1	Q9HBL0	1735 aa	Known RBP	32	■■■□□ 2.71
PCM1-209	ENST00000518930	ADAMTS7	Q9UKP4	1686 aa		31.99	■■■□□ 2.71
PCM1-209	ENST00000518930	TRIM37	O94972	964 aa		31.99	■■■□□ 2.71
PCM1-209	ENST00000518930	RTF1	Q92541	710 aa	Known RBP	31.99	■■■□□ 2.71
PCM1-209	ENST00000518930	SYTL4	Q96C24	671 aa	Predicted RBP	31.99	■■■□□ 2.71
PCM1-209	ENST00000518930	TMPO	P42166	694 aa	Known RBP	31.97	■■■□□ 2.71
PCM1-209	ENST00000518930	PRIM1	P49642	420 aa	Known RBP	31.96	■■■□□ 2.71
PCM1-209	ENST00000518930	BTAF1	O14981	1849 aa		31.96	■■■□□ 2.71
PCM1-209	ENST00000518930	SF3B2	Q13435	895 aa	Known RBP	31.95	■■■□□ 2.71
PCM1-209	ENST00000518930	BCL11B	Q9C0K0	894 aa	Predicted RBP	31.95	■■■□□ 2.71
PCM1-209	ENST00000518930	ERVV-2	B6SEH9	535 aa		31.94	■■■□□ 2.7
PCM1-209	ENST00000518930	RNMT	O43148	476 aa	Known RBP	31.94	■■■□□ 2.7
PCM1-209	ENST00000518930	KCNQ2	O43526	872 aa		31.94	■■■□□ 2.7
PCM1-209	ENST00000518930	HTATSF1	O43719	755 aa	Known RBP	31.94	■■■□□ 2.7
PCM1-209	ENST00000518930	RIPK4	P57078	832 aa		31.94	■■■□□ 2.7
PCM1-209	ENST00000518930	LMOD3	Q0VAK6	560 aa		31.94	■■■□□ 2.7
PCM1-209	ENST00000518930	RRP7A	Q9Y3A4	280 aa	Known RBP	31.94	■■■□□ 2.7
PCM1-209	ENST00000518930	MRC1	P22897	1456 aa		31.93	■■■□□ 2.7
PCM1-209	ENST00000518930	APAF1	O14727	1248 aa		31.93	■■■□□ 2.7
PCM1-209	ENST00000518930	TMOD3	Q9NYL9	352 aa		31.93	■■■□□ 2.7
PCM1-209	ENST00000518930	NEUROD2	Q15784	382 aa		31.92	■■■□□ 2.7
PCM1-209	ENST00000518930	CCDC125	Q86Z20	511 aa		31.92	■■■□□ 2.7
PCM1-209	ENST00000518930	CABP4	P57796	275 aa		31.91	■■■□□ 2.7
PCM1-209	ENST00000518930	LGR6	Q9HBX8	967 aa		31.91	■■■□□ 2.7
PCM1-209	ENST00000518930	UPF1	Q92900	1129 aa	Known RBP eCLIP	31.9	■■■□□ 2.7
PCM1-209	ENST00000518930	TEF	Q10587	303 aa		31.88	■■■□□ 2.69
PCM1-209	ENST00000518930	MCM10	Q7L590	875 aa		31.88	■■■□□ 2.69
PCM1-209	ENST00000518930	IL17RE	Q8NFR9	667 aa		31.88	■■■□□ 2.69
PCM1-209	ENST00000518930	CEMIP	Q8WUJ3	1361 aa		31.88	■■■□□ 2.69
PCM1-209	ENST00000518930	PTF1A	Q7RTS3	328 aa		31.87	■■■□□ 2.69
PCM1-209	ENST00000518930	SIPA1L3	O60292	1781 aa	Predicted RBP	31.86	■■■□□ 2.69
PCM1-209	ENST00000518930	APBA3	O96018	575 aa		31.86	■■■□□ 2.69
PCM1-209	ENST00000518930	DCTN1	Q14203	1278 aa		31.86	■■■□□ 2.69
PCM1-209	ENST00000518930	SLC52A2	Q9HAB3	445 aa		31.86	■■■□□ 2.69
PCM1-209	ENST00000518930	RGPD3	A6NKT7	1758 aa	Predicted RBP	31.84	■■■□□ 2.69
PCM1-209	ENST00000518930	RGPD4	Q7Z3J3	1758 aa		31.84	■■■□□ 2.69

Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms