RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 HINFPQ9BQA5 517 aa9.93□□□□□ -0.82
NPHP3-211ENST00000515289 MKNK1Q9BUB5 465 aa9.93□□□□□ -0.82
NPHP3-211ENST00000515289 PCDHGA11Q9Y5H2 935 aa9.93□□□□□ -0.82
NPHP3-211ENST00000515289 M0R2N6 131 aa9.92□□□□□ -0.82
NPHP3-211ENST00000515289 POTEIP0CG38 1075 aa9.92□□□□□ -0.82
NPHP3-211ENST00000515289 ITGAEP38570 1179 aa9.92□□□□□ -0.82
NPHP3-211ENST00000515289 DPH6Q7L8W6 267 aa9.92□□□□□ -0.82
NPHP3-211ENST00000515289 TMC7Q7Z402 723 aa9.92□□□□□ -0.82
NPHP3-211ENST00000515289 ANKRD13AQ8IZ07 590 aa9.92□□□□□ -0.82
NPHP3-211ENST00000515289 HELQQ8TDG4 1101 aa9.92□□□□□ -0.82
NPHP3-211ENST00000515289 PSME1Q06323 249 aa9.91□□□□□ -0.82
NPHP3-211ENST00000515289 FMR1Q06787 632 aaKnown RBP eCLIP9.91□□□□□ -0.82
NPHP3-211ENST00000515289 FKBP5Q13451 457 aaPredicted RBP9.91□□□□□ -0.82
NPHP3-211ENST00000515289 ZBTB33Q86T24 672 aa9.91□□□□□ -0.82
NPHP3-211ENST00000515289 DZIP3Q86Y13 1208 aaKnown RBP9.91□□□□□ -0.82
NPHP3-211ENST00000515289 FAM13AO94988 1023 aa9.9□□□□□ -0.82
NPHP3-211ENST00000515289 C9orf131Q5VYM1 1079 aa9.9□□□□□ -0.82
NPHP3-211ENST00000515289 GIMAP6Q6P9H5 292 aa9.9□□□□□ -0.82
NPHP3-211ENST00000515289 TOP2AP11388 1531 aaKnown RBP9.89□□□□□ -0.83
NPHP3-211ENST00000515289 ARHGAP33O14559 1287 aa9.89□□□□□ -0.83
NPHP3-211ENST00000515289 TREHO43280 583 aa9.89□□□□□ -0.83
NPHP3-211ENST00000515289 RNF20Q5VTR2 975 aa9.89□□□□□ -0.83
NPHP3-211ENST00000515289 CAPN12Q6ZSI9 719 aa9.89□□□□□ -0.83
NPHP3-211ENST00000515289 SH3BP5LQ7L8J4 393 aa9.89□□□□□ -0.83
NPHP3-211ENST00000515289 NOP9Q86U38 636 aaKnown RBP9.89□□□□□ -0.83
NPHP3-211ENST00000515289 METTL16Q86W50 562 aaKnown RBP9.89□□□□□ -0.83
NPHP3-211ENST00000515289 SLC43A3Q8NBI5 491 aa9.89□□□□□ -0.83
NPHP3-211ENST00000515289 NUDT12Q9BQG2 462 aa9.89□□□□□ -0.83
NPHP3-211ENST00000515289 TINF2Q9BSI4 451 aa9.89□□□□□ -0.83
NPHP3-211ENST00000515289 TANGO6Q9C0B7 1094 aa9.89□□□□□ -0.83
NPHP3-211ENST00000515289 CUEDC1Q9NWM3 386 aaPredicted RBP9.89□□□□□ -0.83
NPHP3-211ENST00000515289 ANKRD62A6NC57 917 aa9.88□□□□□ -0.83
NPHP3-211ENST00000515289 DXOO77932 396 aaKnown RBP9.88□□□□□ -0.83
NPHP3-211ENST00000515289 MSS51Q4VC12 460 aa9.88□□□□□ -0.83
NPHP3-211ENST00000515289 NT5DC4Q86YG4 428 aa9.88□□□□□ -0.83
NPHP3-211ENST00000515289 SCUBE3Q8IX30 993 aa9.88□□□□□ -0.83
NPHP3-211ENST00000515289 NBPF3Q9H094 633 aa9.88□□□□□ -0.83
NPHP3-211ENST00000515289 METTL5Q9NRN9 209 aaKnown RBP9.88□□□□□ -0.83
NPHP3-211ENST00000515289 PEG3Q9GZU2 1588 aa9.88□□□□□ -0.83
NPHP3-211ENST00000515289 NDUFB5O43674 189 aa9.87□□□□□ -0.83
NPHP3-211ENST00000515289 XPCQ01831 940 aaPredicted RBP9.87□□□□□ -0.83
NPHP3-211ENST00000515289 USP4Q13107 963 aa9.87□□□□□ -0.83
NPHP3-211ENST00000515289 TMEM87AQ8NBN3 555 aa9.87□□□□□ -0.83
NPHP3-211ENST00000515289 ZFRQ96KR1 1074 aaKnown RBP9.87□□□□□ -0.83
NPHP3-211ENST00000515289 CITED4Q96RK1 184 aa9.87□□□□□ -0.83
NPHP3-211ENST00000515289 HIRIP3Q9BW71 556 aaPredicted RBP9.87□□□□□ -0.83
NPHP3-211ENST00000515289 PRPF40AO75400 957 aaKnown RBP9.86□□□□□ -0.83
NPHP3-211ENST00000515289 GIGYF1O75420 1035 aaPredicted RBP9.86□□□□□ -0.83
NPHP3-211ENST00000515289 NR1I2O75469 434 aa9.86□□□□□ -0.83
NPHP3-211ENST00000515289 LGR5O75473 907 aa9.86□□□□□ -0.83
NPHP3-211ENST00000515289 TSEN2Q8NCE0 465 aaKnown RBP9.86□□□□□ -0.83
NPHP3-211ENST00000515289 PURBQ96QR8 312 aaKnown RBP9.86□□□□□ -0.83
NPHP3-211ENST00000515289 TGIF2Q9GZN2 237 aa9.86□□□□□ -0.83
NPHP3-211ENST00000515289 MRS2Q9HD23 443 aa9.86□□□□□ -0.83
NPHP3-211ENST00000515289 NLRP2Q9NX02 1062 aa9.86□□□□□ -0.83
NPHP3-211ENST00000515289 VPS9D1Q9Y2B5 631 aa9.86□□□□□ -0.83
NPHP3-211ENST00000515289 FOXO3O43524 673 aa9.85□□□□□ -0.83
NPHP3-211ENST00000515289 MYT1Q01538 1121 aa9.85□□□□□ -0.83
NPHP3-211ENST00000515289 TMC4Q7Z404 712 aa9.85□□□□□ -0.83
NPHP3-211ENST00000515289 ARMC5Q96C12 935 aa9.85□□□□□ -0.83
NPHP3-211ENST00000515289 LRCH3Q96II8 777 aa9.85□□□□□ -0.83
NPHP3-211ENST00000515289 BRPF3Q9ULD4 1205 aa9.85□□□□□ -0.83
NPHP3-211ENST00000515289 LDHBP07195 334 aaKnown RBP9.84□□□□□ -0.83
NPHP3-211ENST00000515289 IGFBP4P22692 258 aa9.84□□□□□ -0.83
NPHP3-211ENST00000515289 MMP16P51512 607 aa9.84□□□□□ -0.83
NPHP3-211ENST00000515289 FANCCQ00597 558 aa9.84□□□□□ -0.83
NPHP3-211ENST00000515289 DSC3Q14574 896 aa9.84□□□□□ -0.83
NPHP3-211ENST00000515289 PARP2Q9UGN5 583 aa9.84□□□□□ -0.83
NPHP3-211ENST00000515289 NAA30Q147X3 362 aaPredicted RBP9.83□□□□□ -0.84
NPHP3-211ENST00000515289 DMRTA1Q5VZB9 504 aa9.83□□□□□ -0.84
NPHP3-211ENST00000515289 RNF34Q969K3 372 aa9.83□□□□□ -0.84
NPHP3-211ENST00000515289 DNAJC2Q99543 621 aaKnown RBP9.83□□□□□ -0.84
NPHP3-211ENST00000515289 LNPKQ9C0E8 428 aa9.83□□□□□ -0.84
NPHP3-211ENST00000515289 CCSER2Q9H7U1 834 aa9.83□□□□□ -0.84
NPHP3-211ENST00000515289 PRKAG2Q9UGJ0 569 aa9.83□□□□□ -0.84
NPHP3-211ENST00000515289 SORBS3O60504 671 aa9.82□□□□□ -0.84
NPHP3-211ENST00000515289 EIF5BO60841 1220 aaKnown RBP9.82□□□□□ -0.84
NPHP3-211ENST00000515289 DAB2P98082 770 aa9.82□□□□□ -0.84
NPHP3-211ENST00000515289 SH3RF1Q7Z6J0 888 aa9.82□□□□□ -0.84
NPHP3-211ENST00000515289 DMRTB1Q96MA1 342 aa9.82□□□□□ -0.84
NPHP3-211ENST00000515289 DUSP9Q99956 384 aaKnown RBP9.82□□□□□ -0.84
NPHP3-211ENST00000515289 PRKD2Q9BZL6 878 aa9.82□□□□□ -0.84
NPHP3-211ENST00000515289 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.82□□□□□ -0.84
NPHP3-211ENST00000515289 EIF4G1Q04637 1599 aaKnown RBP9.82□□□□□ -0.84
NPHP3-211ENST00000515289 ATAD2BQ9ULI0 1458 aa9.81□□□□□ -0.84
NPHP3-211ENST00000515289 BHMG1C9JSJ3 638 aaPredicted RBP9.81□□□□□ -0.84
NPHP3-211ENST00000515289 ATP2B1P20020 1258 aa9.81□□□□□ -0.84
NPHP3-211ENST00000515289 MPSTP25325 297 aa9.81□□□□□ -0.84
NPHP3-211ENST00000515289 PLCB3Q01970 1234 aa9.81□□□□□ -0.84
NPHP3-211ENST00000515289 NBPF20Q3BBV1 942 aa9.81□□□□□ -0.84
NPHP3-211ENST00000515289 FAM161BQ96MY7 647 aa9.81□□□□□ -0.84
NPHP3-211ENST00000515289 TMA7Q9Y2S6 64 aaKnown RBP9.81□□□□□ -0.84
NPHP3-211ENST00000515289 SMARCA2P51531 1590 aa9.8□□□□□ -0.84
NPHP3-211ENST00000515289 SNPHO15079 494 aa9.8□□□□□ -0.84
NPHP3-211ENST00000515289 POTEJP0CG39 1038 aa9.8□□□□□ -0.84
NPHP3-211ENST00000515289 EHHADHQ08426 723 aa9.8□□□□□ -0.84
NPHP3-211ENST00000515289 POTEEQ6S8J3 1075 aa9.8□□□□□ -0.84
NPHP3-211ENST00000515289 CARD14Q9BXL6 1004 aa9.8□□□□□ -0.84
NPHP3-211ENST00000515289 UNC93B1Q9H1C4 597 aa9.8□□□□□ -0.84
NPHP3-211ENST00000515289 PCDHB3Q9Y5E6 796 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms