RNA–Protein interactions for RNA: ENST00000513664.1

PDGFC-209, Transcript of platelet derived growth factor C, humanhuman

TSL 3

Gene PDGFC, Length 597 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-209ENST00000513664 USHBP1Q8N6Y0 703 aa12.7□□□□□ -0.38
PDGFC-209ENST00000513664 ZCRB1Q8TBF4 217 aaKnown RBP12.7□□□□□ -0.38
PDGFC-209ENST00000513664 SPG7Q9UQ90 795 aa12.7□□□□□ -0.38
PDGFC-209ENST00000513664 KDRP35968 1356 aa12.69□□□□□ -0.38
PDGFC-209ENST00000513664 MEGF6O75095 1541 aa12.69□□□□□ -0.38
PDGFC-209ENST00000513664 AMOTQ4VCS5 1084 aa12.69□□□□□ -0.38
PDGFC-209ENST00000513664 BCL9O00512 1426 aa12.69□□□□□ -0.38
PDGFC-209ENST00000513664 PCDH11XQ9BZA7 1347 aa12.68□□□□□ -0.38
PDGFC-209ENST00000513664 PCDH11YQ9BZA8 1340 aa12.68□□□□□ -0.38
PDGFC-209ENST00000513664 U2SURPO15042 1029 aaKnown RBP12.68□□□□□ -0.38
PDGFC-209ENST00000513664 SULT6B1Q6IMI4 303 aa12.68□□□□□ -0.38
PDGFC-209ENST00000513664 PKD1L3Q7Z443 1732 aa12.66□□□□□ -0.38
PDGFC-209ENST00000513664 SF3B2Q13435 895 aaKnown RBP12.66□□□□□ -0.38
PDGFC-209ENST00000513664 PLEKHO1Q53GL0 409 aaPredicted RBP12.66□□□□□ -0.38
PDGFC-209ENST00000513664 MARCH10Q8NA82 808 aaPredicted RBP12.66□□□□□ -0.38
PDGFC-209ENST00000513664 DDX54Q8TDD1 881 aaKnown RBP12.66□□□□□ -0.38
PDGFC-209ENST00000513664 PNNQ9H307 717 aaKnown RBP12.66□□□□□ -0.38
PDGFC-209ENST00000513664 FCHSD2O94868 740 aa12.64□□□□□ -0.39
PDGFC-209ENST00000513664 U2AF1L5P0DN76 240 aaPredicted RBP12.64□□□□□ -0.39
PDGFC-209ENST00000513664 U2AF1Q01081 240 aaKnown RBP eCLIP12.64□□□□□ -0.39
PDGFC-209ENST00000513664 AEBP1Q8IUX7 1158 aa12.64□□□□□ -0.39
PDGFC-209ENST00000513664 UPF1Q92900 1129 aaKnown RBP eCLIP12.64□□□□□ -0.39
PDGFC-209ENST00000513664 NEFMP07197 916 aa12.63□□□□□ -0.39
PDGFC-209ENST00000513664 HSP90AB1P08238 724 aaKnown RBP12.63□□□□□ -0.39
PDGFC-209ENST00000513664 HMOX1P09601 288 aa12.63□□□□□ -0.39
PDGFC-209ENST00000513664 FAM182BQ5T319 152 aa12.63□□□□□ -0.39
PDGFC-209ENST00000513664 IFNL2Q8IZJ0 200 aa12.63□□□□□ -0.39
PDGFC-209ENST00000513664 SHANK3Q9BYB0 1731 aa12.62□□□□□ -0.39
PDGFC-209ENST00000513664 C1orf141Q5JVX7 400 aa12.62□□□□□ -0.39
PDGFC-209ENST00000513664 PHKG2P15735 406 aa12.61□□□□□ -0.39
PDGFC-209ENST00000513664 WDR43Q15061 677 aaKnown RBP eCLIP12.61□□□□□ -0.39
PDGFC-209ENST00000513664 NKX1-1Q15270 411 aaPredicted RBP12.61□□□□□ -0.39
PDGFC-209ENST00000513664 BCL11BQ9C0K0 894 aaPredicted RBP12.61□□□□□ -0.39
PDGFC-209ENST00000513664 RSPH6AQ9H0K4 717 aa12.61□□□□□ -0.39
PDGFC-209ENST00000513664 CYP27B1O15528 508 aa12.6□□□□□ -0.39
PDGFC-209ENST00000513664 TRIM37O94972 964 aa12.6□□□□□ -0.39
PDGFC-209ENST00000513664 ZNF530Q6P9A1 599 aaPredicted RBP12.6□□□□□ -0.39
PDGFC-209ENST00000513664 GAS2L2Q8NHY3 880 aa12.6□□□□□ -0.39
PDGFC-209ENST00000513664 NHSQ6T4R5 1651 aa12.6□□□□□ -0.39
PDGFC-209ENST00000513664 PRKAR2BP31323 418 aa12.59□□□□□ -0.39
PDGFC-209ENST00000513664 BAG6P46379 1132 aa12.59□□□□□ -0.39
PDGFC-209ENST00000513664 AKAP4Q5JQC9 854 aa12.59□□□□□ -0.39
PDGFC-209ENST00000513664 DCAF5Q96JK2 942 aa12.59□□□□□ -0.39
PDGFC-209ENST00000513664 SBF2Q86WG5 1849 aa12.59□□□□□ -0.39
PDGFC-209ENST00000513664 TNS1Q9HBL0 1735 aaKnown RBP12.57□□□□□ -0.4
PDGFC-209ENST00000513664 ERVV-2B6SEH9 535 aa12.57□□□□□ -0.4
PDGFC-209ENST00000513664 APBA3O96018 575 aa12.57□□□□□ -0.4
PDGFC-209ENST00000513664 MAPK8IP3Q9UPT6 1336 aa12.57□□□□□ -0.4
PDGFC-209ENST00000513664 DOT1LQ8TEK3 1739 aa12.57□□□□□ -0.4
PDGFC-209ENST00000513664 PLSCR1O15162 318 aa12.56□□□□□ -0.4
PDGFC-209ENST00000513664 HMGB2P26583 209 aaKnown RBP12.56□□□□□ -0.4
PDGFC-209ENST00000513664 PRIM1P49642 420 aaKnown RBP12.56□□□□□ -0.4
PDGFC-209ENST00000513664 MTHFSDQ2M296 383 aaKnown RBP12.56□□□□□ -0.4
PDGFC-209ENST00000513664 DIEXFQ68CQ4 756 aaKnown RBP12.56□□□□□ -0.4
PDGFC-209ENST00000513664 SYTL4Q96C24 671 aaPredicted RBP12.56□□□□□ -0.4
PDGFC-209ENST00000513664 ACSBG1Q96GR2 724 aa12.56□□□□□ -0.4
PDGFC-209ENST00000513664 RGPD3A6NKT7 1758 aaPredicted RBP12.56□□□□□ -0.4
PDGFC-209ENST00000513664 RGPD4Q7Z3J3 1758 aa12.56□□□□□ -0.4
PDGFC-209ENST00000513664 GNAT3A8MTJ3 354 aa12.55□□□□□ -0.4
PDGFC-209ENST00000513664 HTATSF1O43719 755 aaKnown RBP12.55□□□□□ -0.4
PDGFC-209ENST00000513664 MRS2Q9HD23 443 aa12.55□□□□□ -0.4
PDGFC-209ENST00000513664 MAP3K5Q99683 1374 aa12.55□□□□□ -0.4
PDGFC-209ENST00000513664 KCNQ2O43526 872 aa12.54□□□□□ -0.4
PDGFC-209ENST00000513664 PHACTR3Q96KR7 559 aa12.54□□□□□ -0.4
PDGFC-209ENST00000513664 PLEKHF1Q96S99 279 aa12.54□□□□□ -0.4
PDGFC-209ENST00000513664 TMOD3Q9NYL9 352 aa12.54□□□□□ -0.4
PDGFC-209ENST00000513664 MPRIPQ6WCQ1 1025 aa12.53□□□□□ -0.4
PDGFC-209ENST00000513664 RTF1Q92541 710 aaKnown RBP12.53□□□□□ -0.4
PDGFC-209ENST00000513664 RUNDC1Q96C34 613 aa12.53□□□□□ -0.4
PDGFC-209ENST00000513664 ADAMTS8Q9UP79 889 aa12.53□□□□□ -0.4
PDGFC-209ENST00000513664 TOGARAM1Q9Y4F4 1720 aa12.52□□□□□ -0.41
PDGFC-209ENST00000513664 CABP4P57796 275 aa12.52□□□□□ -0.41
PDGFC-209ENST00000513664 PNISRQ8TF01 805 aaKnown RBP12.52□□□□□ -0.41
PDGFC-209ENST00000513664 SMARCC1Q92922 1105 aaPredicted RBP12.52□□□□□ -0.41
PDGFC-209ENST00000513664 BTAF1O14981 1849 aa12.52□□□□□ -0.41
PDGFC-209ENST00000513664 KDM6AO15550 1401 aaPredicted RBP12.52□□□□□ -0.41
PDGFC-209ENST00000513664 ADAMTS7Q9UKP4 1686 aa12.51□□□□□ -0.41
PDGFC-209ENST00000513664 SCN11AQ9UI33 1791 aa12.51□□□□□ -0.41
PDGFC-209ENST00000513664 CCER2I3L3R5 266 aa12.51□□□□□ -0.41
PDGFC-209ENST00000513664 RNMTO43148 476 aaKnown RBP12.51□□□□□ -0.41
PDGFC-209ENST00000513664 EN1Q05925 392 aaPredicted RBP12.51□□□□□ -0.41
PDGFC-209ENST00000513664 LMOD3Q0VAK6 560 aa12.51□□□□□ -0.41
PDGFC-209ENST00000513664 NFE2L2Q16236 605 aa12.51□□□□□ -0.41
PDGFC-209ENST00000513664 DEFB132Q7Z7B7 95 aa12.51□□□□□ -0.41
PDGFC-209ENST00000513664 CAMKK2Q96RR4 588 aa12.51□□□□□ -0.41
PDGFC-209ENST00000513664 ITGB4P16144 1822 aa12.51□□□□□ -0.41
PDGFC-209ENST00000513664 TEFQ10587 303 aa12.5□□□□□ -0.41
PDGFC-209ENST00000513664 SLC27A3Q5K4L6 730 aa12.5□□□□□ -0.41
PDGFC-209ENST00000513664 PTF1AQ7RTS3 328 aa12.5□□□□□ -0.41
PDGFC-209ENST00000513664 PIGBQ92521 554 aa12.5□□□□□ -0.41
PDGFC-209ENST00000513664 SLC52A2Q9HAB3 445 aa12.5□□□□□ -0.41
PDGFC-209ENST00000513664 MRC1P22897 1456 aa12.5□□□□□ -0.41
PDGFC-209ENST00000513664 KAT6BQ8WYB5 2073 aa12.5□□□□□ -0.41
PDGFC-209ENST00000513664 CCDC184Q52MB2 194 aa12.49□□□□□ -0.41
PDGFC-209ENST00000513664 CEMIPQ8WUJ3 1361 aa12.48□□□□□ -0.41
PDGFC-209ENST00000513664 EZH2Q15910 746 aaKnown RBP12.48□□□□□ -0.41
PDGFC-209ENST00000513664 TXNRD1Q16881 649 aa12.48□□□□□ -0.41
PDGFC-209ENST00000513664 NFATC2IPQ8NCF5 419 aa12.48□□□□□ -0.41
PDGFC-209ENST00000513664 LGR6Q9HBX8 967 aa12.48□□□□□ -0.41
PDGFC-209ENST00000513664 RREB1Q92766 1687 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms