RNA–Protein interactions for RNA: ENST00000511001.2

CHFR-208, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 892 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-208ENST00000511001 CASZ1Q86V15 1759 aa16.66■□□□□ 0.26
CHFR-208ENST00000511001 SMG6Q86US8 1419 aaKnown RBP16.65■□□□□ 0.26
CHFR-208ENST00000511001 PANK3Q9H999 370 aa16.65■□□□□ 0.26
CHFR-208ENST00000511001 TXNRD1Q16881 649 aa16.64■□□□□ 0.25
CHFR-208ENST00000511001 DDX54Q8TDD1 881 aaKnown RBP16.64■□□□□ 0.25
CHFR-208ENST00000511001 PAPPAQ13219 1627 aa16.63■□□□□ 0.25
CHFR-208ENST00000511001 NCAPD2Q15021 1401 aa16.63■□□□□ 0.25
CHFR-208ENST00000511001 ZCRB1Q8TBF4 217 aaKnown RBP16.63■□□□□ 0.25
CHFR-208ENST00000511001 PKD1L3Q7Z443 1732 aa16.62■□□□□ 0.25
CHFR-208ENST00000511001 POLKQ9UBT6 870 aa16.62■□□□□ 0.25
CHFR-208ENST00000511001 WASHC2AQ641Q2 1341 aa16.62■□□□□ 0.25
CHFR-208ENST00000511001 LY75O60449 1722 aa16.62■□□□□ 0.25
CHFR-208ENST00000511001 YY1P25490 414 aa16.61■□□□□ 0.25
CHFR-208ENST00000511001 NSD2O96028 1365 aa16.6■□□□□ 0.25
CHFR-208ENST00000511001 PPM1GO15355 546 aaPredicted RBP16.59■□□□□ 0.25
CHFR-208ENST00000511001 TATP17735 454 aaPredicted RBP16.59■□□□□ 0.25
CHFR-208ENST00000511001 RAPGEF4Q8WZA2 1011 aa16.59■□□□□ 0.25
CHFR-208ENST00000511001 KIF7Q2M1P5 1343 aa16.59■□□□□ 0.25
CHFR-208ENST00000511001 TOGARAM1Q9Y4F4 1720 aa16.59■□□□□ 0.25
CHFR-208ENST00000511001 ITGB4P16144 1822 aa16.59■□□□□ 0.25
CHFR-208ENST00000511001 TNNT2P45379 298 aaPredicted RBP16.57■□□□□ 0.24
CHFR-208ENST00000511001 PRIM1P49642 420 aaKnown RBP16.57■□□□□ 0.24
CHFR-208ENST00000511001 EYA1Q99502 592 aa16.57■□□□□ 0.24
CHFR-208ENST00000511001 PDGFDQ9GZP0 370 aaPredicted RBP16.57■□□□□ 0.24
CHFR-208ENST00000511001 TUBGCP6Q96RT7 1819 aa16.56■□□□□ 0.24
CHFR-208ENST00000511001 SLC15A2Q16348 729 aa16.56■□□□□ 0.24
CHFR-208ENST00000511001 LRRC4BQ9NT99 713 aa16.56■□□□□ 0.24
CHFR-208ENST00000511001 QSER1Q2KHR3 1735 aa16.56■□□□□ 0.24
CHFR-208ENST00000511001 CYP27B1O15528 508 aa16.55■□□□□ 0.24
CHFR-208ENST00000511001 EIF4A2Q14240 407 aaKnown RBP16.55■□□□□ 0.24
CHFR-208ENST00000511001 STK32BQ9NY57 414 aa16.55■□□□□ 0.24
CHFR-208ENST00000511001 PCDH11XQ9BZA7 1347 aa16.54■□□□□ 0.24
CHFR-208ENST00000511001 PCDH11YQ9BZA8 1340 aa16.54■□□□□ 0.24
CHFR-208ENST00000511001 SYTL4Q96C24 671 aaPredicted RBP16.54■□□□□ 0.24
CHFR-208ENST00000511001 PPP1R1BQ9UD71 204 aaPredicted RBP16.54■□□□□ 0.24
CHFR-208ENST00000511001 ZNF827Q17R98 1081 aa16.53■□□□□ 0.24
CHFR-208ENST00000511001 AMER1Q5JTC6 1135 aaPredicted RBP16.53■□□□□ 0.24
CHFR-208ENST00000511001 SPON1Q9HCB6 807 aa16.53■□□□□ 0.24
CHFR-208ENST00000511001 MORC1Q86VD1 984 aa16.52■□□□□ 0.24
CHFR-208ENST00000511001 KNSTRNQ9Y448 316 aa16.52■□□□□ 0.24
CHFR-208ENST00000511001 TAF1LQ8IZX4 1826 aa16.52■□□□□ 0.23
CHFR-208ENST00000511001 IGSF1Q8N6C5 1336 aa16.5■□□□□ 0.23
CHFR-208ENST00000511001 PER1O15534 1290 aaPredicted RBP16.5■□□□□ 0.23
CHFR-208ENST00000511001 KCNQ4P56696 695 aa16.5■□□□□ 0.23
CHFR-208ENST00000511001 SLC27A3Q5K4L6 730 aa16.5■□□□□ 0.23
CHFR-208ENST00000511001 ZBTB7AO95365 584 aa16.49■□□□□ 0.23
CHFR-208ENST00000511001 NKX1-1Q15270 411 aaPredicted RBP16.49■□□□□ 0.23
CHFR-208ENST00000511001 AKT1S1Q96B36 256 aa16.49■□□□□ 0.23
CHFR-208ENST00000511001 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.49■□□□□ 0.23
CHFR-208ENST00000511001 COL24A1Q17RW2 1714 aa16.48■□□□□ 0.23
CHFR-208ENST00000511001 PTGER2P43116 358 aa16.48■□□□□ 0.23
CHFR-208ENST00000511001 SPG7Q9UQ90 795 aa16.48■□□□□ 0.23
CHFR-208ENST00000511001 C5P01031 1676 aa16.47■□□□□ 0.23
CHFR-208ENST00000511001 DCAF8L1A6NGE4 600 aa16.47■□□□□ 0.23
CHFR-208ENST00000511001 PLEKHG2Q9H7P9 1386 aa16.47■□□□□ 0.23
CHFR-208ENST00000511001 CHD4Q14839 1912 aa16.47■□□□□ 0.23
CHFR-208ENST00000511001 SGIP1Q9BQI5 828 aa16.46■□□□□ 0.23
CHFR-208ENST00000511001 ATF5Q9Y2D1 282 aaPredicted RBP16.46■□□□□ 0.23
CHFR-208ENST00000511001 UTRNP46939 3433 aa16.45■□□□□ 0.22
CHFR-208ENST00000511001 PHKG2P15735 406 aa16.45■□□□□ 0.22
CHFR-208ENST00000511001 CCNL1Q9UK58 526 aaPredicted RBP16.45■□□□□ 0.22
CHFR-208ENST00000511001 MPRIPQ6WCQ1 1025 aa16.44■□□□□ 0.22
CHFR-208ENST00000511001 MTFR1LQ9H019 292 aa16.44■□□□□ 0.22
CHFR-208ENST00000511001 PNPLA7Q6ZV29 1317 aa16.44■□□□□ 0.22
CHFR-208ENST00000511001 PALLDQ8WX93 1383 aa16.43■□□□□ 0.22
CHFR-208ENST00000511001 IL13P35225 146 aa16.43■□□□□ 0.22
CHFR-208ENST00000511001 AEBP1Q8IUX7 1158 aa16.43■□□□□ 0.22
CHFR-208ENST00000511001 IFNL2Q8IZJ0 200 aa16.43■□□□□ 0.22
CHFR-208ENST00000511001 PIGBQ92521 554 aa16.43■□□□□ 0.22
CHFR-208ENST00000511001 VIRMAQ69YN4 1812 aaKnown RBP16.42■□□□□ 0.22
CHFR-208ENST00000511001 NPC1L1Q9UHC9 1359 aa16.42■□□□□ 0.22
CHFR-208ENST00000511001 KDRP35968 1356 aa16.41■□□□□ 0.22
CHFR-208ENST00000511001 MTHFSP49914 203 aa16.41■□□□□ 0.22
CHFR-208ENST00000511001 CC2D1BQ5T0F9 858 aaKnown RBP16.41■□□□□ 0.22
CHFR-208ENST00000511001 C4BP0C0L5 1744 aa16.41■□□□□ 0.22
CHFR-208ENST00000511001 UBR3Q6ZT12 1888 aa16.41■□□□□ 0.22
CHFR-208ENST00000511001 SCN11AQ9UI33 1791 aa16.39■□□□□ 0.21
CHFR-208ENST00000511001 KDM6AO15550 1401 aaPredicted RBP16.39■□□□□ 0.21
CHFR-208ENST00000511001 PLEKHO1Q53GL0 409 aaPredicted RBP16.39■□□□□ 0.21
CHFR-208ENST00000511001 SULT6B1Q6IMI4 303 aa16.39■□□□□ 0.21
CHFR-208ENST00000511001 SLC16A10Q8TF71 515 aa16.39■□□□□ 0.21
CHFR-208ENST00000511001 SMARCC1Q92922 1105 aaPredicted RBP16.39■□□□□ 0.21
CHFR-208ENST00000511001 TFCP2L1Q9NZI6 479 aa16.39■□□□□ 0.21
CHFR-208ENST00000511001 TMOD3Q9NYL9 352 aa16.38■□□□□ 0.21
CHFR-208ENST00000511001 COL3A1P02461 1466 aaPredicted RBP16.37■□□□□ 0.21
CHFR-208ENST00000511001 ZNF530Q6P9A1 599 aaPredicted RBP16.37■□□□□ 0.21
CHFR-208ENST00000511001 ASAP1Q9ULH1 1129 aa16.37■□□□□ 0.21
CHFR-208ENST00000511001 AMOTQ4VCS5 1084 aa16.36■□□□□ 0.21
CHFR-208ENST00000511001 COL23A1Q86Y22 540 aaPredicted RBP16.36■□□□□ 0.21
CHFR-208ENST00000511001 ATG3Q9NT62 314 aa16.36■□□□□ 0.21
CHFR-208ENST00000511001 ZNF831Q5JPB2 1677 aa16.36■□□□□ 0.21
CHFR-208ENST00000511001 LOC102724428A0A0B4J2F2 783 aa16.35■□□□□ 0.21
CHFR-208ENST00000511001 ERVV-2B6SEH9 535 aa16.35■□□□□ 0.21
CHFR-208ENST00000511001 SIK1P57059 783 aa16.35■□□□□ 0.21
CHFR-208ENST00000511001 ZNF784Q8NCA9 323 aaPredicted RBP16.35■□□□□ 0.21
CHFR-208ENST00000511001 ARXQ96QS3 562 aa16.35■□□□□ 0.21
CHFR-208ENST00000511001 FHDC1Q9C0D6 1143 aaPredicted RBP16.35■□□□□ 0.21
CHFR-208ENST00000511001 HSP90AB1P08238 724 aaKnown RBP16.34■□□□□ 0.21
CHFR-208ENST00000511001 AMIGO3Q86WK7 504 aa16.34■□□□□ 0.21
CHFR-208ENST00000511001 DCAF5Q96JK2 942 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms