RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 IGSF1Q8N6C5 1336 aa15.33■□□□□ 0.04
LIMCH1-210ENST00000509454 SF3B2Q13435 895 aaKnown RBP15.33■□□□□ 0.04
LIMCH1-210ENST00000509454 MARCH10Q8NA82 808 aaPredicted RBP15.33■□□□□ 0.04
LIMCH1-210ENST00000509454 NUDCQ9Y266 331 aa15.33■□□□□ 0.04
LIMCH1-210ENST00000509454 HMOX1P09601 288 aa15.32■□□□□ 0.04
LIMCH1-210ENST00000509454 AEBP1Q8IUX7 1158 aa15.32■□□□□ 0.04
LIMCH1-210ENST00000509454 UPF1Q92900 1129 aaKnown RBP eCLIP15.32■□□□□ 0.04
LIMCH1-210ENST00000509454 OVOS2A0A0G2JMS6 1433 aa15.31■□□□□ 0.04
LIMCH1-210ENST00000509454 MYBBP1AQ9BQG0 1328 aaKnown RBP15.31■□□□□ 0.04
LIMCH1-210ENST00000509454 ANP32CO43423 234 aa15.3■□□□□ 0.04
LIMCH1-210ENST00000509454 PRKRIP1Q9H875 184 aaPredicted RBP15.3■□□□□ 0.04
LIMCH1-210ENST00000509454 SPG7Q9UQ90 795 aa15.3■□□□□ 0.04
LIMCH1-210ENST00000509454 COL3A1P02461 1466 aaPredicted RBP15.29■□□□□ 0.04
LIMCH1-210ENST00000509454 TRIM37O94972 964 aa15.29■□□□□ 0.04
LIMCH1-210ENST00000509454 PCDH11XQ9BZA7 1347 aa15.29■□□□□ 0.04
LIMCH1-210ENST00000509454 PCDH11YQ9BZA8 1340 aa15.29■□□□□ 0.04
LIMCH1-210ENST00000509454 KAT6BQ8WYB5 2073 aa15.28■□□□□ 0.04
LIMCH1-210ENST00000509454 U2AF1L5P0DN76 240 aaPredicted RBP15.28■□□□□ 0.04
LIMCH1-210ENST00000509454 U2AF1Q01081 240 aaKnown RBP eCLIP15.28■□□□□ 0.04
LIMCH1-210ENST00000509454 NCAPD2Q15021 1401 aa15.28■□□□□ 0.04
LIMCH1-210ENST00000509454 PLEKHO1Q53GL0 409 aaPredicted RBP15.27■□□□□ 0.04
LIMCH1-210ENST00000509454 ACSBG1Q96GR2 724 aa15.27■□□□□ 0.04
LIMCH1-210ENST00000509454 RGPD1P0DJD0 1748 aa15.27■□□□□ 0.04
LIMCH1-210ENST00000509454 CCDC125Q86Z20 511 aa15.26■□□□□ 0.03
LIMCH1-210ENST00000509454 ZNF530Q6P9A1 599 aaPredicted RBP15.25■□□□□ 0.03
LIMCH1-210ENST00000509454 SYTL4Q96C24 671 aaPredicted RBP15.25■□□□□ 0.03
LIMCH1-210ENST00000509454 AMOTQ4VCS5 1084 aa15.24■□□□□ 0.03
LIMCH1-210ENST00000509454 KDRP35968 1356 aa15.23■□□□□ 0.03
LIMCH1-210ENST00000509454 APBA3O96018 575 aa15.23■□□□□ 0.03
LIMCH1-210ENST00000509454 BAG6P46379 1132 aa15.23■□□□□ 0.03
LIMCH1-210ENST00000509454 C1orf141Q5JVX7 400 aa15.23■□□□□ 0.03
LIMCH1-210ENST00000509454 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.23■□□□□ 0.03
LIMCH1-210ENST00000509454 PKD1L3Q7Z443 1732 aa15.23■□□□□ 0.03
LIMCH1-210ENST00000509454 SHANK3Q9BYB0 1731 aa15.23■□□□□ 0.03
LIMCH1-210ENST00000509454 CYP27B1O15528 508 aa15.22■□□□□ 0.03
LIMCH1-210ENST00000509454 PRKAR2BP31323 418 aa15.22■□□□□ 0.03
LIMCH1-210ENST00000509454 IFNL2Q8IZJ0 200 aa15.22■□□□□ 0.03
LIMCH1-210ENST00000509454 KCNQ2O43526 872 aa15.22■□□□□ 0.03
LIMCH1-210ENST00000509454 NEFMP07197 916 aa15.22■□□□□ 0.03
LIMCH1-210ENST00000509454 WDR43Q15061 677 aaKnown RBP eCLIP15.22■□□□□ 0.03
LIMCH1-210ENST00000509454 DEFB132Q7Z7B7 95 aa15.22■□□□□ 0.03
LIMCH1-210ENST00000509454 BCL11BQ9C0K0 894 aaPredicted RBP15.22■□□□□ 0.03
LIMCH1-210ENST00000509454 PHKG2P15735 406 aa15.21■□□□□ 0.03
LIMCH1-210ENST00000509454 SBF2Q86WG5 1849 aa15.2■□□□□ 0.02
LIMCH1-210ENST00000509454 BCL9O00512 1426 aa15.2■□□□□ 0.02
LIMCH1-210ENST00000509454 PRIM1P49642 420 aaKnown RBP15.2■□□□□ 0.02
LIMCH1-210ENST00000509454 PTF1AQ7RTS3 328 aa15.2■□□□□ 0.02
LIMCH1-210ENST00000509454 DOT1LQ8TEK3 1739 aa15.2■□□□□ 0.02
LIMCH1-210ENST00000509454 FCHSD2O94868 740 aa15.19■□□□□ 0.02
LIMCH1-210ENST00000509454 HSP90AB1P08238 724 aaKnown RBP15.19■□□□□ 0.02
LIMCH1-210ENST00000509454 EN1Q05925 392 aaPredicted RBP15.19■□□□□ 0.02
LIMCH1-210ENST00000509454 RSPH6AQ9H0K4 717 aa15.19■□□□□ 0.02
LIMCH1-210ENST00000509454 TNS1Q9HBL0 1735 aaKnown RBP15.19■□□□□ 0.02
LIMCH1-210ENST00000509454 PLEKHG2Q9H7P9 1386 aa15.19■□□□□ 0.02
LIMCH1-210ENST00000509454 MTHFSDQ2M296 383 aaKnown RBP15.18■□□□□ 0.02
LIMCH1-210ENST00000509454 NHSQ6T4R5 1651 aa15.18■□□□□ 0.02
LIMCH1-210ENST00000509454 EP400Q96L91 3159 aa15.18■□□□□ 0.02
LIMCH1-210ENST00000509454 MPRIPQ6WCQ1 1025 aa15.17■□□□□ 0.02
LIMCH1-210ENST00000509454 PNNQ9H307 717 aaKnown RBP15.17■□□□□ 0.02
LIMCH1-210ENST00000509454 MAPK8IP3Q9UPT6 1336 aa15.17■□□□□ 0.02
LIMCH1-210ENST00000509454 AKAP4Q5JQC9 854 aa15.17■□□□□ 0.02
LIMCH1-210ENST00000509454 GAS2L2Q8NHY3 880 aa15.17■□□□□ 0.02
LIMCH1-210ENST00000509454 MRS2Q9HD23 443 aa15.17■□□□□ 0.02
LIMCH1-210ENST00000509454 NKX1-1Q15270 411 aaPredicted RBP15.16■□□□□ 0.02
LIMCH1-210ENST00000509454 DCAF5Q96JK2 942 aa15.16■□□□□ 0.02
LIMCH1-210ENST00000509454 PHACTR3Q96KR7 559 aa15.16■□□□□ 0.02
LIMCH1-210ENST00000509454 TMOD3Q9NYL9 352 aa15.16■□□□□ 0.02
LIMCH1-210ENST00000509454 EZH2Q15910 746 aaKnown RBP15.15■□□□□ 0.02
LIMCH1-210ENST00000509454 CABP4P57796 275 aa15.14■□□□□ 0.01
LIMCH1-210ENST00000509454 BTAF1O14981 1849 aa15.14■□□□□ 0.01
LIMCH1-210ENST00000509454 CCDC184Q52MB2 194 aa15.13■□□□□ 0.01
LIMCH1-210ENST00000509454 DIEXFQ68CQ4 756 aaKnown RBP15.13■□□□□ 0.01
LIMCH1-210ENST00000509454 CCDC146Q8IYE0 955 aa15.13■□□□□ 0.01
LIMCH1-210ENST00000509454 CNKSR2Q8WXI2 1034 aa15.13■□□□□ 0.01
LIMCH1-210ENST00000509454 TOGARAM1Q9Y4F4 1720 aa15.13■□□□□ 0.01
LIMCH1-210ENST00000509454 MAP3K5Q99683 1374 aa15.13■□□□□ 0.01
LIMCH1-210ENST00000509454 GNAT3A8MTJ3 354 aa15.12■□□□□ 0.01
LIMCH1-210ENST00000509454 KDM6AO15550 1401 aaPredicted RBP15.12■□□□□ 0.01
LIMCH1-210ENST00000509454 ERVV-2B6SEH9 535 aa15.12■□□□□ 0.01
LIMCH1-210ENST00000509454 RTF1Q92541 710 aaKnown RBP15.12■□□□□ 0.01
LIMCH1-210ENST00000509454 CAMKK2Q96RR4 588 aa15.12■□□□□ 0.01
LIMCH1-210ENST00000509454 ADAMTS8Q9UP79 889 aa15.12■□□□□ 0.01
LIMCH1-210ENST00000509454 ITGB4P16144 1822 aa15.11■□□□□ 0.01
LIMCH1-210ENST00000509454 PLSCR1O15162 318 aa15.11■□□□□ 0.01
LIMCH1-210ENST00000509454 RNMTO43148 476 aaKnown RBP15.11■□□□□ 0.01
LIMCH1-210ENST00000509454 PIGBQ92521 554 aa15.11■□□□□ 0.01
LIMCH1-210ENST00000509454 LGR6Q9HBX8 967 aa15.11■□□□□ 0.01
LIMCH1-210ENST00000509454 TXNRD1Q16881 649 aa15.09■□□□□ 0.01
LIMCH1-210ENST00000509454 PLEKHF1Q96S99 279 aa15.09■□□□□ 0.01
LIMCH1-210ENST00000509454 TEFQ10587 303 aa15.08■□□□□ 0.01
LIMCH1-210ENST00000509454 NEUROD2Q15784 382 aa15.08■□□□□ 0.01
LIMCH1-210ENST00000509454 NFE2L2Q16236 605 aa15.08■□□□□ 0.01
LIMCH1-210ENST00000509454 NFATC2IPQ8NCF5 419 aa15.08■□□□□ 0.01
LIMCH1-210ENST00000509454 SMARCC1Q92922 1105 aaPredicted RBP15.08■□□□□ 0.01
LIMCH1-210ENST00000509454 RUNDC1Q96C34 613 aa15.08■□□□□ 0.01
LIMCH1-210ENST00000509454 SCN11AQ9UI33 1791 aa15.08■□□□□ 0
LIMCH1-210ENST00000509454 PALLDQ8WX93 1383 aa15.08■□□□□ 0
LIMCH1-210ENST00000509454 MCM10Q7L590 875 aa15.07■□□□□ 0
LIMCH1-210ENST00000509454 ASAP1Q9ULH1 1129 aa15.07■□□□□ 0
LIMCH1-210ENST00000509454 RRP7AQ9Y3A4 280 aaKnown RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms