RNA–Protein interactions for RNA: ENST00000509258.5

RNF4-212, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 893 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-212ENST00000509258 FHDC1Q9C0D6 1143 aaPredicted RBP15.22■□□□□ 0.03
RNF4-212ENST00000509258 HSPA5P11021 654 aaKnown RBP15.21■□□□□ 0.03
RNF4-212ENST00000509258 SGIP1Q9BQI5 828 aa15.21■□□□□ 0.03
RNF4-212ENST00000509258 RTL1A6NKG5 1358 aa15.21■□□□□ 0.02
RNF4-212ENST00000509258 SLC27A3Q5K4L6 730 aa15.2■□□□□ 0.02
RNF4-212ENST00000509258 DDX54Q8TDD1 881 aaKnown RBP15.2■□□□□ 0.02
RNF4-212ENST00000509258 SYT17Q9BSW7 474 aa15.2■□□□□ 0.02
RNF4-212ENST00000509258 TUBGCP6Q96RT7 1819 aa15.2■□□□□ 0.02
RNF4-212ENST00000509258 AMPHP49418 695 aa15.19■□□□□ 0.02
RNF4-212ENST00000509258 ZNF827Q17R98 1081 aa15.19■□□□□ 0.02
RNF4-212ENST00000509258 USHBP1Q8N6Y0 703 aa15.19■□□□□ 0.02
RNF4-212ENST00000509258 ARXQ96QS3 562 aa15.19■□□□□ 0.02
RNF4-212ENST00000509258 LRRC4BQ9NT99 713 aa15.19■□□□□ 0.02
RNF4-212ENST00000509258 MAP3K5Q99683 1374 aa15.19■□□□□ 0.02
RNF4-212ENST00000509258 TOGARAM1Q9Y4F4 1720 aa15.18■□□□□ 0.02
RNF4-212ENST00000509258 HSP90AB2PQ58FF8 381 aa15.18■□□□□ 0.02
RNF4-212ENST00000509258 NBPF6Q5VWK0 638 aa15.18■□□□□ 0.02
RNF4-212ENST00000509258 NBPF4Q96M43 638 aa15.18■□□□□ 0.02
RNF4-212ENST00000509258 CDCA8Q53HL2 280 aa15.17■□□□□ 0.02
RNF4-212ENST00000509258 SYTL4Q96C24 671 aaPredicted RBP15.17■□□□□ 0.02
RNF4-212ENST00000509258 POLR3GLQ9BT43 218 aa15.17■□□□□ 0.02
RNF4-212ENST00000509258 EMILIN1Q9Y6C2 1016 aa15.17■□□□□ 0.02
RNF4-212ENST00000509258 LY75O60449 1722 aa15.17■□□□□ 0.02
RNF4-212ENST00000509258 SMG6Q86US8 1419 aaKnown RBP15.17■□□□□ 0.02
RNF4-212ENST00000509258 ITGB4P16144 1822 aa15.16■□□□□ 0.02
RNF4-212ENST00000509258 AKT1S1Q96B36 256 aa15.16■□□□□ 0.02
RNF4-212ENST00000509258 QSER1Q2KHR3 1735 aa15.16■□□□□ 0.02
RNF4-212ENST00000509258 PKD1L3Q7Z443 1732 aa15.16■□□□□ 0.02
RNF4-212ENST00000509258 INSRP06213 1382 aa15.15■□□□□ 0.02
RNF4-212ENST00000509258 SLC16A10Q8TF71 515 aa15.15■□□□□ 0.02
RNF4-212ENST00000509258 NSD2O96028 1365 aa15.14■□□□□ 0.01
RNF4-212ENST00000509258 PRIM1P49642 420 aaKnown RBP15.14■□□□□ 0.01
RNF4-212ENST00000509258 EIF4G2P78344 907 aaKnown RBP eCLIP15.14■□□□□ 0.01
RNF4-212ENST00000509258 ZCRB1Q8TBF4 217 aaKnown RBP15.14■□□□□ 0.01
RNF4-212ENST00000509258 CGNL1Q0VF96 1302 aa15.14■□□□□ 0.01
RNF4-212ENST00000509258 PNPLA7Q6ZV29 1317 aa15.14■□□□□ 0.01
RNF4-212ENST00000509258 FLT4P35916 1363 aa15.13■□□□□ 0.01
RNF4-212ENST00000509258 POLD1P28340 1107 aa15.13■□□□□ 0.01
RNF4-212ENST00000509258 TFCP2L1Q9NZI6 479 aa15.13■□□□□ 0.01
RNF4-212ENST00000509258 NCAPD2Q15021 1401 aa15.12■□□□□ 0.01
RNF4-212ENST00000509258 ZNF784Q8NCA9 323 aaPredicted RBP15.12■□□□□ 0.01
RNF4-212ENST00000509258 KIF24Q5T7B8 1368 aa15.11■□□□□ 0.01
RNF4-212ENST00000509258 RAPGEF4Q8WZA2 1011 aa15.11■□□□□ 0.01
RNF4-212ENST00000509258 CCNL1Q9UK58 526 aaPredicted RBP15.11■□□□□ 0.01
RNF4-212ENST00000509258 COL24A1Q17RW2 1714 aa15.1■□□□□ 0.01
RNF4-212ENST00000509258 PANK3Q9H999 370 aa15.1■□□□□ 0.01
RNF4-212ENST00000509258 TAF1LQ8IZX4 1826 aa15.1■□□□□ 0.01
RNF4-212ENST00000509258 KCNQ4P56696 695 aa15.09■□□□□ 0.01
RNF4-212ENST00000509258 KLHL34Q8N239 644 aa15.09■□□□□ 0.01
RNF4-212ENST00000509258 POLKQ9UBT6 870 aa15.09■□□□□ 0.01
RNF4-212ENST00000509258 PCDH11XQ9BZA7 1347 aa15.09■□□□□ 0.01
RNF4-212ENST00000509258 PCDH11YQ9BZA8 1340 aa15.09■□□□□ 0.01
RNF4-212ENST00000509258 CHD4Q14839 1912 aa15.08■□□□□ 0
RNF4-212ENST00000509258 TATP17735 454 aaPredicted RBP15.08■□□□□ 0
RNF4-212ENST00000509258 HMGB2P26583 209 aaKnown RBP15.08■□□□□ 0
RNF4-212ENST00000509258 TNNT2P45379 298 aaPredicted RBP15.08■□□□□ 0
RNF4-212ENST00000509258 GPR162Q16538 588 aa15.08■□□□□ 0
RNF4-212ENST00000509258 PPM1GO15355 546 aaPredicted RBP15.07■□□□□ 0
RNF4-212ENST00000509258 CYP27B1O15528 508 aa15.06■□□□□ 0
RNF4-212ENST00000509258 WASHC2AQ641Q2 1341 aa15.06■□□□□ 0
RNF4-212ENST00000509258 GOLGB1Q14789 3259 aaKnown RBP15.06■□□□□ 0
RNF4-212ENST00000509258 C5P01031 1676 aa15.06■□□□□ 0
RNF4-212ENST00000509258 EYA1Q99502 592 aa15.05■□□□□ -0
RNF4-212ENST00000509258 PALLDQ8WX93 1383 aa15.04■□□□□ -0
RNF4-212ENST00000509258 KIF7Q2M1P5 1343 aa15.04■□□□□ -0
RNF4-212ENST00000509258 MSH5O43196 834 aa15.04■□□□□ -0
RNF4-212ENST00000509258 EIF4A2Q14240 407 aaKnown RBP15.03■□□□□ -0
RNF4-212ENST00000509258 PELP1Q8IZL8 1130 aaKnown RBP15.03■□□□□ -0
RNF4-212ENST00000509258 VIRMAQ69YN4 1812 aaKnown RBP15.03■□□□□ -0
RNF4-212ENST00000509258 COL23A1Q86Y22 540 aaPredicted RBP15.02■□□□□ -0
RNF4-212ENST00000509258 NLGN2Q8NFZ4 835 aa15.02■□□□□ -0
RNF4-212ENST00000509258 MPRIPQ6WCQ1 1025 aa15.01□□□□□ -0.01
RNF4-212ENST00000509258 FLAD1Q8NFF5 587 aa15.01□□□□□ -0.01
RNF4-212ENST00000509258 SMARCC1Q92922 1105 aaPredicted RBP15□□□□□ -0.01
RNF4-212ENST00000509258 UBR3Q6ZT12 1888 aa14.99□□□□□ -0.01
RNF4-212ENST00000509258 GRIN3BO60391 1043 aa14.99□□□□□ -0.01
RNF4-212ENST00000509258 AMER1Q5JTC6 1135 aaPredicted RBP14.99□□□□□ -0.01
RNF4-212ENST00000509258 MSL1Q68DK7 614 aa14.99□□□□□ -0.01
RNF4-212ENST00000509258 C4BP0C0L5 1744 aa14.98□□□□□ -0.01
RNF4-212ENST00000509258 C1QTNF8P60827 252 aa14.98□□□□□ -0.01
RNF4-212ENST00000509258 SPG7Q9UQ90 795 aa14.98□□□□□ -0.01
RNF4-212ENST00000509258 IGSF1Q8N6C5 1336 aa14.97□□□□□ -0.01
RNF4-212ENST00000509258 AK7Q96M32 723 aa14.97□□□□□ -0.01
RNF4-212ENST00000509258 SENP3-EIF4A1A0A087X0R7 540 aa14.96□□□□□ -0.01
RNF4-212ENST00000509258 GIGYF1O75420 1035 aaPredicted RBP14.96□□□□□ -0.01
RNF4-212ENST00000509258 YBX3P16989 372 aaKnown RBP eCLIP14.96□□□□□ -0.01
RNF4-212ENST00000509258 NKX1-1Q15270 411 aaPredicted RBP14.96□□□□□ -0.01
RNF4-212ENST00000509258 AEBP1Q8IUX7 1158 aa14.96□□□□□ -0.01
RNF4-212ENST00000509258 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.96□□□□□ -0.01
RNF4-212ENST00000509258 CD2APQ9Y5K6 639 aa14.96□□□□□ -0.01
RNF4-212ENST00000509258 PER1O15534 1290 aaPredicted RBP14.95□□□□□ -0.02
RNF4-212ENST00000509258 MORC1Q86VD1 984 aa14.95□□□□□ -0.02
RNF4-212ENST00000509258 AMIGO3Q86WK7 504 aa14.95□□□□□ -0.02
RNF4-212ENST00000509258 PIGBQ92521 554 aa14.95□□□□□ -0.02
RNF4-212ENST00000509258 SCN11AQ9UI33 1791 aa14.95□□□□□ -0.02
RNF4-212ENST00000509258 PLEKHG2Q9H7P9 1386 aa14.95□□□□□ -0.02
RNF4-212ENST00000509258 PHKG2P15735 406 aa14.94□□□□□ -0.02
RNF4-212ENST00000509258 SMIM5Q71RC9 77 aa14.94□□□□□ -0.02
RNF4-212ENST00000509258 TMOD3Q9NYL9 352 aa14.94□□□□□ -0.02
RNF4-212ENST00000509258 KDM6AO15550 1401 aaPredicted RBP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms