RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 SOWAHDA6NJG2 315 aa6.87□□□□□ -1.31
USP53-204ENST00000507906 UNCXA6NJT0 531 aa6.87□□□□□ -1.31
USP53-204ENST00000507906 AGERQ15109 404 aa6.87□□□□□ -1.31
USP53-204ENST00000507906 PLA2G2CQ5R387 149 aa6.87□□□□□ -1.31
USP53-204ENST00000507906 CCDC102BQ68D86 513 aa6.87□□□□□ -1.31
USP53-204ENST00000507906 B4GALNT3Q6L9W6 998 aa6.87□□□□□ -1.31
USP53-204ENST00000507906 DNAJC14Q6Y2X3 702 aaPredicted RBP6.87□□□□□ -1.31
USP53-204ENST00000507906 CAPN12Q6ZSI9 719 aa6.87□□□□□ -1.31
USP53-204ENST00000507906 TRIM50Q86XT4 487 aa6.87□□□□□ -1.31
USP53-204ENST00000507906 TPCN2Q8NHX9 752 aa6.87□□□□□ -1.31
USP53-204ENST00000507906 PURBQ96QR8 312 aaKnown RBP6.87□□□□□ -1.31
USP53-204ENST00000507906 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.87□□□□□ -1.31
USP53-204ENST00000507906 SCTRP47872 440 aa6.86□□□□□ -1.31
USP53-204ENST00000507906 SWI5Q1ZZU3 235 aa6.86□□□□□ -1.31
USP53-204ENST00000507906 ZNF592Q92610 1267 aa6.86□□□□□ -1.31
USP53-204ENST00000507906 PCDHB11Q9Y5F2 797 aa6.86□□□□□ -1.31
USP53-204ENST00000507906 STAU1O95793 577 aaKnown RBP6.85□□□□□ -1.31
USP53-204ENST00000507906 ATP1A2P50993 1020 aa6.85□□□□□ -1.31
USP53-204ENST00000507906 SEC13P55735 322 aa6.85□□□□□ -1.31
USP53-204ENST00000507906 SKOR1P84550 965 aa6.85□□□□□ -1.31
USP53-204ENST00000507906 TAS1R3Q7RTX0 852 aa6.85□□□□□ -1.31
USP53-204ENST00000507906 RAB15P59190 212 aa6.84□□□□□ -1.31
USP53-204ENST00000507906 ECM1Q16610 540 aa6.84□□□□□ -1.31
USP53-204ENST00000507906 TRMT44Q8IYL2 757 aaKnown RBP6.84□□□□□ -1.31
USP53-204ENST00000507906 CXXC1Q9P0U4 656 aaPredicted RBP6.84□□□□□ -1.31
USP53-204ENST00000507906 SEPT3Q9UH03 358 aa6.84□□□□□ -1.31
USP53-204ENST00000507906 PDZRN3Q9UPQ7 1066 aa6.84□□□□□ -1.31
USP53-204ENST00000507906 TSEN2Q8NCE0 465 aaKnown RBP6.83□□□□□ -1.32
USP53-204ENST00000507906 C1orf216Q8TAB5 229 aa6.83□□□□□ -1.32
USP53-204ENST00000507906 SLC10A4Q96EP9 437 aa6.83□□□□□ -1.32
USP53-204ENST00000507906 ANO2Q9NQ90 1003 aa6.83□□□□□ -1.32
USP53-204ENST00000507906 AMOTL2Q9Y2J4 779 aa6.83□□□□□ -1.32
USP53-204ENST00000507906 RNF223E7ERA6 249 aa6.82□□□□□ -1.32
USP53-204ENST00000507906 RNF20Q5VTR2 975 aa6.82□□□□□ -1.32
USP53-204ENST00000507906 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.82□□□□□ -1.32
USP53-204ENST00000507906 KCTD15Q96SI1 283 aaPredicted RBP6.82□□□□□ -1.32
USP53-204ENST00000507906 ERVH48-1M5A8F1 160 aa6.81□□□□□ -1.32
USP53-204ENST00000507906 NRG2O14511 850 aaPredicted RBP6.81□□□□□ -1.32
USP53-204ENST00000507906 WEE1P30291 646 aa6.81□□□□□ -1.32
USP53-204ENST00000507906 PSME1Q06323 249 aa6.81□□□□□ -1.32
USP53-204ENST00000507906 USP4Q13107 963 aa6.81□□□□□ -1.32
USP53-204ENST00000507906 ZNF211Q13398 564 aaPredicted RBP6.81□□□□□ -1.32
USP53-204ENST00000507906 LAPTM4AQ15012 233 aa6.81□□□□□ -1.32
USP53-204ENST00000507906 INTS6LQ5JSJ4 861 aaKnown RBP6.81□□□□□ -1.32
USP53-204ENST00000507906 TMEM229AB2RXF0 380 aa6.8□□□□□ -1.32
USP53-204ENST00000507906 E9PSI1 815 aa6.8□□□□□ -1.32
USP53-204ENST00000507906 GGCXP38435 758 aa6.8□□□□□ -1.32
USP53-204ENST00000507906 TRIM32Q13049 653 aa6.8□□□□□ -1.32
USP53-204ENST00000507906 FKBP5Q13451 457 aaPredicted RBP6.8□□□□□ -1.32
USP53-204ENST00000507906 MTMR3Q13615 1198 aa6.8□□□□□ -1.32
USP53-204ENST00000507906 NBPF20Q3BBV1 942 aa6.8□□□□□ -1.32
USP53-204ENST00000507906 HINFPQ9BQA5 517 aa6.8□□□□□ -1.32
USP53-204ENST00000507906 V9GY48 417 aaPredicted RBP6.8□□□□□ -1.32
USP53-204ENST00000507906 RBM47A0AV96 593 aaKnown RBP6.79□□□□□ -1.32
USP53-204ENST00000507906 ABL1P00519 1130 aa6.79□□□□□ -1.32
USP53-204ENST00000507906 GRM5P41594 1212 aa6.79□□□□□ -1.32
USP53-204ENST00000507906 SEPT12Q8IYM1 358 aa6.79□□□□□ -1.32
USP53-204ENST00000507906 EMID1Q96A84 441 aaPredicted RBP6.79□□□□□ -1.32
USP53-204ENST00000507906 MKNK1Q9BUB5 465 aa6.79□□□□□ -1.32
USP53-204ENST00000507906 TMPRSS4Q9NRS4 437 aa6.79□□□□□ -1.32
USP53-204ENST00000507906 ZNF358Q9NW07 568 aa6.79□□□□□ -1.32
USP53-204ENST00000507906 DNMT3AQ9Y6K1 912 aaPredicted RBP6.79□□□□□ -1.32
USP53-204ENST00000507906 SCNN1DP51172 638 aa6.78□□□□□ -1.32
USP53-204ENST00000507906 MARSP56192 900 aaKnown RBP6.78□□□□□ -1.32
USP53-204ENST00000507906 GTF3C2Q8WUA4 911 aaPredicted RBP6.78□□□□□ -1.32
USP53-204ENST00000507906 OSBPL3Q9H4L5 887 aa6.78□□□□□ -1.32
USP53-204ENST00000507906 KIAA1522Q9P206 1035 aaPredicted RBP6.78□□□□□ -1.32
USP53-204ENST00000507906 BIN2Q9UBW5 565 aaPredicted RBP6.78□□□□□ -1.32
USP53-204ENST00000507906 ICMTO60725 284 aa6.77□□□□□ -1.33
USP53-204ENST00000507906 SLC19A1P41440 591 aa6.77□□□□□ -1.33
USP53-204ENST00000507906 ERVK-9P63128 1117 aa6.77□□□□□ -1.33
USP53-204ENST00000507906 TAGLNQ01995 201 aaKnown RBP6.77□□□□□ -1.33
USP53-204ENST00000507906 TNS4Q8IZW8 715 aa6.77□□□□□ -1.33
USP53-204ENST00000507906 TNFRSF10AO00220 468 aa6.76□□□□□ -1.33
USP53-204ENST00000507906 C21orf2O43822 256 aa6.76□□□□□ -1.33
USP53-204ENST00000507906 VARSP26640 1264 aaKnown RBP6.76□□□□□ -1.33
USP53-204ENST00000507906 NAA30Q147X3 362 aaPredicted RBP6.76□□□□□ -1.33
USP53-204ENST00000507906 TRIM67Q6ZTA4 783 aa6.76□□□□□ -1.33
USP53-204ENST00000507906 VASH1Q7L8A9 365 aaPredicted RBP6.76□□□□□ -1.33
USP53-204ENST00000507906 SIRT1Q96EB6 747 aa6.76□□□□□ -1.33
USP53-204ENST00000507906 MAP4K5Q9Y4K4 846 aa6.76□□□□□ -1.33
USP53-204ENST00000507906 ANKRD33BA6NCL7 494 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 H3BRB1 525 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 LILRA1O75019 489 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 ZNF16P17020 682 aaPredicted RBP6.75□□□□□ -1.33
USP53-204ENST00000507906 ADD1P35611 737 aaKnown RBP6.75□□□□□ -1.33
USP53-204ENST00000507906 EPHA4P54764 986 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 ARHGAP4P98171 946 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 ARID5BQ14865 1188 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 RC3H1Q5TC82 1133 aaKnown RBP6.75□□□□□ -1.33
USP53-204ENST00000507906 LIAT1Q6ZQX7 453 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 NPAS4Q8IUM7 802 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 ANKLE1Q8NAG6 615 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 CDK15Q96Q40 435 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 TUT1Q9H6E5 874 aaKnown RBP6.75□□□□□ -1.33
USP53-204ENST00000507906 CYLDQ9NQC7 956 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 EGFL7Q9UHF1 273 aa6.75□□□□□ -1.33
USP53-204ENST00000507906 CDV3Q9UKY7 258 aaKnown RBP6.75□□□□□ -1.33
USP53-204ENST00000507906 RBM19Q9Y4C8 960 aaKnown RBP6.75□□□□□ -1.33
USP53-204ENST00000507906 M0R2N6 131 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms