RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 TNNT2P45379 298 aaPredicted RBP11.31□□□□□ -0.6
PDGFC-205ENST00000506880 NCBP3Q53F19 620 aaKnown RBP11.31□□□□□ -0.6
PDGFC-205ENST00000506880 NBPF6Q5VWK0 638 aa11.31□□□□□ -0.6
PDGFC-205ENST00000506880 FAM196AQ6ZSG2 479 aa11.31□□□□□ -0.6
PDGFC-205ENST00000506880 SEPT12Q8IYM1 358 aa11.31□□□□□ -0.6
PDGFC-205ENST00000506880 NBPF4Q96M43 638 aa11.31□□□□□ -0.6
PDGFC-205ENST00000506880 EYA1Q99502 592 aa11.31□□□□□ -0.6
PDGFC-205ENST00000506880 SPG7Q9UQ90 795 aa11.31□□□□□ -0.6
PDGFC-205ENST00000506880 PCDH11XQ9BZA7 1347 aa11.31□□□□□ -0.6
PDGFC-205ENST00000506880 PCDH11YQ9BZA8 1340 aa11.31□□□□□ -0.6
PDGFC-205ENST00000506880 NEFMP07197 916 aa11.3□□□□□ -0.6
PDGFC-205ENST00000506880 PDE3BQ13370 1112 aa11.3□□□□□ -0.6
PDGFC-205ENST00000506880 FAM98CQ17RN3 349 aaKnown RBP11.3□□□□□ -0.6
PDGFC-205ENST00000506880 KRT27Q7Z3Y8 459 aa11.3□□□□□ -0.6
PDGFC-205ENST00000506880 NGEFQ8N5V2 710 aa11.3□□□□□ -0.6
PDGFC-205ENST00000506880 RGPD3A6NKT7 1758 aaPredicted RBP11.3□□□□□ -0.6
PDGFC-205ENST00000506880 RGPD4Q7Z3J3 1758 aa11.3□□□□□ -0.6
PDGFC-205ENST00000506880 PLEKHG5O94827 1062 aa11.29□□□□□ -0.6
PDGFC-205ENST00000506880 PLEKHO1Q53GL0 409 aaPredicted RBP11.29□□□□□ -0.6
PDGFC-205ENST00000506880 ZCRB1Q8TBF4 217 aaKnown RBP11.29□□□□□ -0.6
PDGFC-205ENST00000506880 CCER2I3L3R5 266 aa11.28□□□□□ -0.6
PDGFC-205ENST00000506880 FBLN1P23142 703 aa11.28□□□□□ -0.6
PDGFC-205ENST00000506880 NKX1-1Q15270 411 aaPredicted RBP11.28□□□□□ -0.6
PDGFC-205ENST00000506880 SBF2Q86WG5 1849 aa11.28□□□□□ -0.6
PDGFC-205ENST00000506880 SHANK3Q9BYB0 1731 aa11.27□□□□□ -0.61
PDGFC-205ENST00000506880 HTATSF1O43719 755 aaKnown RBP11.27□□□□□ -0.61
PDGFC-205ENST00000506880 GAS2L2Q8NHY3 880 aa11.27□□□□□ -0.61
PDGFC-205ENST00000506880 LTV1Q96GA3 475 aaPredicted RBP11.27□□□□□ -0.61
PDGFC-205ENST00000506880 MEGF6O75095 1541 aa11.26□□□□□ -0.61
PDGFC-205ENST00000506880 IFNL2Q8IZJ0 200 aa11.26□□□□□ -0.61
PDGFC-205ENST00000506880 EP400Q96L91 3159 aa11.25□□□□□ -0.61
PDGFC-205ENST00000506880 ADAMTS7Q9UKP4 1686 aa11.25□□□□□ -0.61
PDGFC-205ENST00000506880 SULT6B1Q6IMI4 303 aa11.25□□□□□ -0.61
PDGFC-205ENST00000506880 USP35Q9P2H5 1018 aa11.25□□□□□ -0.61
PDGFC-205ENST00000506880 NHSQ6T4R5 1651 aa11.24□□□□□ -0.61
PDGFC-205ENST00000506880 A0A0G2JS52 829 aa11.24□□□□□ -0.61
PDGFC-205ENST00000506880 HOXD11P31277 338 aaPredicted RBP11.24□□□□□ -0.61
PDGFC-205ENST00000506880 MYT1Q01538 1121 aa11.24□□□□□ -0.61
PDGFC-205ENST00000506880 WDR43Q15061 677 aaKnown RBP eCLIP11.24□□□□□ -0.61
PDGFC-205ENST00000506880 DCAF5Q96JK2 942 aa11.24□□□□□ -0.61
PDGFC-205ENST00000506880 SCN11AQ9UI33 1791 aa11.23□□□□□ -0.61
PDGFC-205ENST00000506880 ERVV-2B6SEH9 535 aa11.23□□□□□ -0.61
PDGFC-205ENST00000506880 U2AF1L5P0DN76 240 aaPredicted RBP11.23□□□□□ -0.61
PDGFC-205ENST00000506880 U2AF1Q01081 240 aaKnown RBP eCLIP11.23□□□□□ -0.61
PDGFC-205ENST00000506880 AKAP4Q5JQC9 854 aa11.23□□□□□ -0.61
PDGFC-205ENST00000506880 C1orf141Q5JVX7 400 aa11.23□□□□□ -0.61
PDGFC-205ENST00000506880 RSPH6AQ9H0K4 717 aa11.23□□□□□ -0.61
PDGFC-205ENST00000506880 U2SURPO15042 1029 aaKnown RBP11.22□□□□□ -0.61
PDGFC-205ENST00000506880 LMOD3Q0VAK6 560 aa11.22□□□□□ -0.61
PDGFC-205ENST00000506880 ZNF831Q5JPB2 1677 aa11.22□□□□□ -0.61
PDGFC-205ENST00000506880 DIEXFQ68CQ4 756 aaKnown RBP11.22□□□□□ -0.61
PDGFC-205ENST00000506880 VIRMAQ69YN4 1812 aaKnown RBP11.22□□□□□ -0.61
PDGFC-205ENST00000506880 BCL11BQ9C0K0 894 aaPredicted RBP11.22□□□□□ -0.61
PDGFC-205ENST00000506880 MAPK8IP3Q9UPT6 1336 aa11.21□□□□□ -0.61
PDGFC-205ENST00000506880 PLSCR1O15162 318 aa11.21□□□□□ -0.61
PDGFC-205ENST00000506880 SF3B2Q13435 895 aaKnown RBP11.21□□□□□ -0.61
PDGFC-205ENST00000506880 MRC1P22897 1456 aa11.2□□□□□ -0.62
PDGFC-205ENST00000506880 PHKG2P15735 406 aa11.2□□□□□ -0.62
PDGFC-205ENST00000506880 MARCH10Q8NA82 808 aaPredicted RBP11.2□□□□□ -0.62
PDGFC-205ENST00000506880 BABAM1Q9NWV8 329 aa11.2□□□□□ -0.62
PDGFC-205ENST00000506880 ITGB4P16144 1822 aa11.2□□□□□ -0.62
PDGFC-205ENST00000506880 TNS1Q9HBL0 1735 aaKnown RBP11.2□□□□□ -0.62
PDGFC-205ENST00000506880 CYP27B1O15528 508 aa11.19□□□□□ -0.62
PDGFC-205ENST00000506880 ZNF530Q6P9A1 599 aaPredicted RBP11.19□□□□□ -0.62
PDGFC-205ENST00000506880 SMARCC1Q92922 1105 aaPredicted RBP11.19□□□□□ -0.62
PDGFC-205ENST00000506880 RUNDC1Q96C34 613 aa11.19□□□□□ -0.62
PDGFC-205ENST00000506880 PLEKHF1Q96S99 279 aa11.19□□□□□ -0.62
PDGFC-205ENST00000506880 DOT1LQ8TEK3 1739 aa11.18□□□□□ -0.62
PDGFC-205ENST00000506880 CEMIPQ8WUJ3 1361 aa11.18□□□□□ -0.62
PDGFC-205ENST00000506880 MAP3K5Q99683 1374 aa11.18□□□□□ -0.62
PDGFC-205ENST00000506880 CICQ96RK0 1608 aaPredicted RBP11.18□□□□□ -0.62
PDGFC-205ENST00000506880 DLG5Q8TDM6 1919 aa11.18□□□□□ -0.62
PDGFC-205ENST00000506880 GNAT3A8MTJ3 354 aa11.18□□□□□ -0.62
PDGFC-205ENST00000506880 PRKAR2BP31323 418 aa11.18□□□□□ -0.62
PDGFC-205ENST00000506880 BAG6P46379 1132 aa11.18□□□□□ -0.62
PDGFC-205ENST00000506880 CALD1Q05682 793 aaKnown RBP11.18□□□□□ -0.62
PDGFC-205ENST00000506880 USHBP1Q8N6Y0 703 aa11.18□□□□□ -0.62
PDGFC-205ENST00000506880 PNISRQ8TF01 805 aaKnown RBP11.18□□□□□ -0.62
PDGFC-205ENST00000506880 CNKSR2Q8WXI2 1034 aa11.18□□□□□ -0.62
PDGFC-205ENST00000506880 MRS2Q9HD23 443 aa11.18□□□□□ -0.62
PDGFC-205ENST00000506880 NFE2L2Q16236 605 aa11.17□□□□□ -0.62
PDGFC-205ENST00000506880 AEBP1Q8IUX7 1158 aa11.17□□□□□ -0.62
PDGFC-205ENST00000506880 BTAF1O14981 1849 aa11.16□□□□□ -0.62
PDGFC-205ENST00000506880 SIPA1L3O60292 1781 aaPredicted RBP11.16□□□□□ -0.62
PDGFC-205ENST00000506880 DCAF8L1A6NGE4 600 aa11.16□□□□□ -0.62
PDGFC-205ENST00000506880 HMOX1P09601 288 aa11.16□□□□□ -0.62
PDGFC-205ENST00000506880 CCDC27Q2M243 656 aa11.16□□□□□ -0.62
PDGFC-205ENST00000506880 SLC27A3Q5K4L6 730 aa11.16□□□□□ -0.62
PDGFC-205ENST00000506880 DDX54Q8TDD1 881 aaKnown RBP11.16□□□□□ -0.62
PDGFC-205ENST00000506880 RTF1Q92541 710 aaKnown RBP11.16□□□□□ -0.62
PDGFC-205ENST00000506880 UPF1Q92900 1129 aaKnown RBP eCLIP11.16□□□□□ -0.62
PDGFC-205ENST00000506880 CHMP4AQ9BY43 222 aa11.16□□□□□ -0.62
PDGFC-205ENST00000506880 LY75O60449 1722 aa11.15□□□□□ -0.62
PDGFC-205ENST00000506880 MTHFSDQ2M296 383 aaKnown RBP11.15□□□□□ -0.62
PDGFC-205ENST00000506880 TMOD3Q9NYL9 352 aa11.14□□□□□ -0.63
PDGFC-205ENST00000506880 ADAMTS8Q9UP79 889 aa11.14□□□□□ -0.63
PDGFC-205ENST00000506880 TOGARAM1Q9Y4F4 1720 aa11.14□□□□□ -0.63
PDGFC-205ENST00000506880 KDM6AO15550 1401 aaPredicted RBP11.13□□□□□ -0.63
PDGFC-205ENST00000506880 RNMTO43148 476 aaKnown RBP11.13□□□□□ -0.63
PDGFC-205ENST00000506880 CNGB1Q14028 1251 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms