RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 PRIM1P49642 420 aaKnown RBP29.3■■■□□ 2.28
SQSTM1-210ENST00000506042 DOT1LQ8TEK3 1739 aa29.3■■■□□ 2.28
SQSTM1-210ENST00000506042 KIF24Q5T7B8 1368 aa29.29■■■□□ 2.28
SQSTM1-210ENST00000506042 TATP17735 454 aaPredicted RBP29.29■■■□□ 2.28
SQSTM1-210ENST00000506042 SGIP1Q9BQI5 828 aa29.29■■■□□ 2.28
SQSTM1-210ENST00000506042 ZNF827Q17R98 1081 aa29.28■■■□□ 2.28
SQSTM1-210ENST00000506042 LRRC4BQ9NT99 713 aa29.28■■■□□ 2.28
SQSTM1-210ENST00000506042 AKT1S1Q96B36 256 aa29.27■■■□□ 2.28
SQSTM1-210ENST00000506042 CHD4Q14839 1912 aa29.26■■■□□ 2.27
SQSTM1-210ENST00000506042 GPR162Q16538 588 aa29.26■■■□□ 2.27
SQSTM1-210ENST00000506042 KLHL34Q8N239 644 aa29.26■■■□□ 2.27
SQSTM1-210ENST00000506042 CCNL1Q9UK58 526 aaPredicted RBP29.26■■■□□ 2.27
SQSTM1-210ENST00000506042 GGNBP2Q9H3C7 697 aa29.25■■■□□ 2.27
SQSTM1-210ENST00000506042 FLT4P35916 1363 aa29.25■■■□□ 2.27
SQSTM1-210ENST00000506042 KIF20BQ96Q89 1820 aa29.24■■■□□ 2.27
SQSTM1-210ENST00000506042 PCDH11XQ9BZA7 1347 aa29.24■■■□□ 2.27
SQSTM1-210ENST00000506042 PCDH11YQ9BZA8 1340 aa29.24■■■□□ 2.27
SQSTM1-210ENST00000506042 FYB1O15117 783 aa29.24■■■□□ 2.27
SQSTM1-210ENST00000506042 TRIM26Q12899 539 aaPredicted RBP29.24■■■□□ 2.27
SQSTM1-210ENST00000506042 LY75O60449 1722 aa29.23■■■□□ 2.27
SQSTM1-210ENST00000506042 RRS1Q15050 365 aaKnown RBP29.23■■■□□ 2.27
SQSTM1-210ENST00000506042 INSRP06213 1382 aa29.23■■■□□ 2.27
SQSTM1-210ENST00000506042 MEGF6O75095 1541 aa29.22■■■□□ 2.27
SQSTM1-210ENST00000506042 MSH5O43196 834 aa29.22■■■□□ 2.27
SQSTM1-210ENST00000506042 RGPD2P0DJD1 1756 aa29.21■■■□□ 2.27
SQSTM1-210ENST00000506042 FLAD1Q8NFF5 587 aa29.2■■■□□ 2.26
SQSTM1-210ENST00000506042 PNPLA7Q6ZV29 1317 aa29.2■■■□□ 2.26
SQSTM1-210ENST00000506042 NBPF6Q5VWK0 638 aa29.19■■■□□ 2.26
SQSTM1-210ENST00000506042 NBPF4Q96M43 638 aa29.19■■■□□ 2.26
SQSTM1-210ENST00000506042 ZNF784Q8NCA9 323 aaPredicted RBP29.18■■■□□ 2.26
SQSTM1-210ENST00000506042 TIMELESSQ9UNS1 1208 aa29.18■■■□□ 2.26
SQSTM1-210ENST00000506042 SHANK3Q9BYB0 1731 aa29.17■■■□□ 2.26
SQSTM1-210ENST00000506042 FBLN1P23142 703 aa29.15■■■□□ 2.26
SQSTM1-210ENST00000506042 PELP1Q8IZL8 1130 aaKnown RBP29.15■■■□□ 2.26
SQSTM1-210ENST00000506042 SMARCC1Q92922 1105 aaPredicted RBP29.15■■■□□ 2.26
SQSTM1-210ENST00000506042 USHBP1Q8N6Y0 703 aa29.14■■■□□ 2.26
SQSTM1-210ENST00000506042 NSD2O96028 1365 aa29.13■■■□□ 2.25
SQSTM1-210ENST00000506042 NSD3Q9BZ95 1437 aa29.12■■■□□ 2.25
SQSTM1-210ENST00000506042 COL24A1Q17RW2 1714 aa29.12■■■□□ 2.25
SQSTM1-210ENST00000506042 HSP90AB2PQ58FF8 381 aa29.12■■■□□ 2.25
SQSTM1-210ENST00000506042 SPG7Q9UQ90 795 aa29.12■■■□□ 2.25
SQSTM1-210ENST00000506042 GRIN3BO60391 1043 aa29.11■■■□□ 2.25
SQSTM1-210ENST00000506042 TUBGCP6Q96RT7 1819 aa29.1■■■□□ 2.25
SQSTM1-210ENST00000506042 KCNQ4P56696 695 aa29.09■■■□□ 2.25
SQSTM1-210ENST00000506042 C5P01031 1676 aa29.09■■■□□ 2.25
SQSTM1-210ENST00000506042 PPM1GO15355 546 aaPredicted RBP29.08■■■□□ 2.25
SQSTM1-210ENST00000506042 MPRIPQ6WCQ1 1025 aa29.08■■■□□ 2.25
SQSTM1-210ENST00000506042 PALLDQ8WX93 1383 aa29.08■■■□□ 2.25
SQSTM1-210ENST00000506042 AK7Q96M32 723 aa29.06■■■□□ 2.24
SQSTM1-210ENST00000506042 CLSPNQ9HAW4 1339 aa29.05■■■□□ 2.24
SQSTM1-210ENST00000506042 COL23A1Q86Y22 540 aaPredicted RBP29.03■■■□□ 2.24
SQSTM1-210ENST00000506042 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.02■■■□□ 2.24
SQSTM1-210ENST00000506042 PKD1L3Q7Z443 1732 aa29.02■■■□□ 2.24
SQSTM1-210ENST00000506042 CD2APQ9Y5K6 639 aa29■■■□□ 2.23
SQSTM1-210ENST00000506042 EMILIN1Q9Y6C2 1016 aa29■■■□□ 2.23
SQSTM1-210ENST00000506042 WASHC2AQ641Q2 1341 aa28.99■■■□□ 2.23
SQSTM1-210ENST00000506042 GIGYF1O75420 1035 aaPredicted RBP28.99■■■□□ 2.23
SQSTM1-210ENST00000506042 PLEKHG2Q9H7P9 1386 aa28.99■■■□□ 2.23
SQSTM1-210ENST00000506042 CYP27B1O15528 508 aa28.98■■■□□ 2.23
SQSTM1-210ENST00000506042 TMOD3Q9NYL9 352 aa28.98■■■□□ 2.23
SQSTM1-210ENST00000506042 ANKRD26Q9UPS8 1709 aa28.97■■■□□ 2.23
SQSTM1-210ENST00000506042 TAF1LQ8IZX4 1826 aa28.97■■■□□ 2.23
SQSTM1-210ENST00000506042 C1QTNF8P60827 252 aa28.97■■■□□ 2.23
SQSTM1-210ENST00000506042 CARD14Q9BXL6 1004 aa28.97■■■□□ 2.23
SQSTM1-210ENST00000506042 ITGB4P16144 1822 aa28.97■■■□□ 2.23
SQSTM1-210ENST00000506042 MSL1Q68DK7 614 aa28.96■■■□□ 2.23
SQSTM1-210ENST00000506042 POLR3GLQ9BT43 218 aa28.96■■■□□ 2.23
SQSTM1-210ENST00000506042 C4BP0C0L5 1744 aa28.95■■■□□ 2.23
SQSTM1-210ENST00000506042 SENP3-EIF4A1A0A087X0R7 540 aa28.95■■■□□ 2.22
SQSTM1-210ENST00000506042 NKX1-1Q15270 411 aaPredicted RBP28.95■■■□□ 2.22
SQSTM1-210ENST00000506042 IFNL2Q8IZJ0 200 aa28.95■■■□□ 2.22
SQSTM1-210ENST00000506042 NLGN2Q8NFZ4 835 aa28.95■■■□□ 2.22
SQSTM1-210ENST00000506042 NCAPD2Q15021 1401 aa28.94■■■□□ 2.22
SQSTM1-210ENST00000506042 MAP2P11137 1827 aaKnown RBP28.94■■■□□ 2.22
SQSTM1-210ENST00000506042 SSFA2P28290 1259 aa28.93■■■□□ 2.22
SQSTM1-210ENST00000506042 HSP90AB1P08238 724 aaKnown RBP28.9■■■□□ 2.22
SQSTM1-210ENST00000506042 PIGBQ92521 554 aa28.9■■■□□ 2.22
SQSTM1-210ENST00000506042 TOGARAM1Q9Y4F4 1720 aa28.9■■■□□ 2.22
SQSTM1-210ENST00000506042 LOC102724428A0A0B4J2F2 783 aa28.89■■■□□ 2.22
SQSTM1-210ENST00000506042 SIK1P57059 783 aa28.89■■■□□ 2.22
SQSTM1-210ENST00000506042 EYA1Q99502 592 aa28.89■■■□□ 2.22
SQSTM1-210ENST00000506042 PHF14O94880 888 aa28.88■■■□□ 2.21
SQSTM1-210ENST00000506042 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.87■■■□□ 2.21
SQSTM1-210ENST00000506042 EIF4G2P78344 907 aaKnown RBP eCLIP28.87■■■□□ 2.21
SQSTM1-210ENST00000506042 POLKQ9UBT6 870 aa28.86■■■□□ 2.21
SQSTM1-210ENST00000506042 PHKG2P15735 406 aa28.85■■■□□ 2.21
SQSTM1-210ENST00000506042 ATP6V1AP38606 617 aa28.85■■■□□ 2.21
SQSTM1-210ENST00000506042 UBR3Q6ZT12 1888 aa28.84■■■□□ 2.21
SQSTM1-210ENST00000506042 YBX3P16989 372 aaKnown RBP eCLIP28.83■■■□□ 2.21
SQSTM1-210ENST00000506042 PCGF6Q9BYE7 350 aa28.83■■■□□ 2.21
SQSTM1-210ENST00000506042 GNPATO15228 680 aa28.82■■■□□ 2.2
SQSTM1-210ENST00000506042 TNNT2P45379 298 aaPredicted RBP28.82■■■□□ 2.2
SQSTM1-210ENST00000506042 PLEKHO1Q53GL0 409 aaPredicted RBP28.82■■■□□ 2.2
SQSTM1-210ENST00000506042 AMOTQ4VCS5 1084 aa28.81■■■□□ 2.2
SQSTM1-210ENST00000506042 ERVV-2B6SEH9 535 aa28.8■■■□□ 2.2
SQSTM1-210ENST00000506042 EIF4A2Q14240 407 aaKnown RBP28.8■■■□□ 2.2
SQSTM1-210ENST00000506042 DCAF5Q96JK2 942 aa28.79■■■□□ 2.2
SQSTM1-210ENST00000506042 RTCBQ9Y3I0 505 aaKnown RBP28.79■■■□□ 2.2
SQSTM1-210ENST00000506042 GPBP1L1Q9HC44 474 aaPredicted RBP28.78■■■□□ 2.2
SQSTM1-210ENST00000506042 ASAP1Q9ULH1 1129 aa28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms