RNA–Protein interactions for RNA: ENST00000504380.1

PDLIM7-212, Transcript of PDZ and LIM domain 7, humanhuman

TSL 2

Gene PDLIM7, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-212ENST00000504380 BRWD3Q6RI45 1802 aa17.72■□□□□ 0.43
PDLIM7-212ENST00000504380 FAM182BQ5T319 152 aa17.71■□□□□ 0.43
PDLIM7-212ENST00000504380 EXOC5O00471 708 aa17.7■□□□□ 0.42
PDLIM7-212ENST00000504380 PRKAR2BP31323 418 aa17.7■□□□□ 0.42
PDLIM7-212ENST00000504380 WDR43Q15061 677 aaKnown RBP eCLIP17.7■□□□□ 0.42
PDLIM7-212ENST00000504380 DDB1Q16531 1140 aa17.7■□□□□ 0.42
PDLIM7-212ENST00000504380 RSPH6AQ9H0K4 717 aa17.7■□□□□ 0.42
PDLIM7-212ENST00000504380 PARP4Q9UKK3 1724 aaKnown RBP17.69■□□□□ 0.42
PDLIM7-212ENST00000504380 LRRC37A3O60309 1634 aa17.69■□□□□ 0.42
PDLIM7-212ENST00000504380 KDRP35968 1356 aa17.69■□□□□ 0.42
PDLIM7-212ENST00000504380 ZCRB1Q8TBF4 217 aaKnown RBP17.69■□□□□ 0.42
PDLIM7-212ENST00000504380 DDX54Q8TDD1 881 aaKnown RBP17.69■□□□□ 0.42
PDLIM7-212ENST00000504380 CDCA7Q9BWT1 371 aaPredicted RBP17.69■□□□□ 0.42
PDLIM7-212ENST00000504380 ADAMTS8Q9UP79 889 aa17.69■□□□□ 0.42
PDLIM7-212ENST00000504380 OVOS2A0A0G2JMS6 1433 aa17.69■□□□□ 0.42
PDLIM7-212ENST00000504380 PDE3BQ13370 1112 aa17.67■□□□□ 0.42
PDLIM7-212ENST00000504380 CCDC146Q8IYE0 955 aa17.67■□□□□ 0.42
PDLIM7-212ENST00000504380 MARCH10Q8NA82 808 aaPredicted RBP17.67■□□□□ 0.42
PDLIM7-212ENST00000504380 PNISRQ8TF01 805 aaKnown RBP17.67■□□□□ 0.42
PDLIM7-212ENST00000504380 PHACTR3Q96KR7 559 aa17.67■□□□□ 0.42
PDLIM7-212ENST00000504380 FCHSD2O94868 740 aa17.66■□□□□ 0.42
PDLIM7-212ENST00000504380 KRT27Q7Z3Y8 459 aa17.66■□□□□ 0.42
PDLIM7-212ENST00000504380 TNS2Q63HR2 1409 aa17.65■□□□□ 0.42
PDLIM7-212ENST00000504380 SHANK3Q9BYB0 1731 aa17.65■□□□□ 0.42
PDLIM7-212ENST00000504380 SENP3-EIF4A1A0A087X0R7 540 aa17.65■□□□□ 0.42
PDLIM7-212ENST00000504380 CCER2I3L3R5 266 aa17.65■□□□□ 0.42
PDLIM7-212ENST00000504380 PLEKHO1Q53GL0 409 aaPredicted RBP17.65■□□□□ 0.42
PDLIM7-212ENST00000504380 FAM9BQ8IZU0 186 aa17.65■□□□□ 0.42
PDLIM7-212ENST00000504380 EP400Q96L91 3159 aa17.65■□□□□ 0.42
PDLIM7-212ENST00000504380 MTHFSDQ2M296 383 aaKnown RBP17.64■□□□□ 0.41
PDLIM7-212ENST00000504380 PLEKHF1Q96S99 279 aa17.64■□□□□ 0.41
PDLIM7-212ENST00000504380 SPG7Q9UQ90 795 aa17.64■□□□□ 0.41
PDLIM7-212ENST00000504380 PKD1L3Q7Z443 1732 aa17.64■□□□□ 0.41
PDLIM7-212ENST00000504380 CYP27B1O15528 508 aa17.63■□□□□ 0.41
PDLIM7-212ENST00000504380 ZNF530Q6P9A1 599 aaPredicted RBP17.63■□□□□ 0.41
PDLIM7-212ENST00000504380 AMOTQ4VCS5 1084 aa17.61■□□□□ 0.41
PDLIM7-212ENST00000504380 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.61■□□□□ 0.41
PDLIM7-212ENST00000504380 PHKG2P15735 406 aa17.6■□□□□ 0.41
PDLIM7-212ENST00000504380 PCDH11XQ9BZA7 1347 aa17.6■□□□□ 0.41
PDLIM7-212ENST00000504380 PCDH11YQ9BZA8 1340 aa17.6■□□□□ 0.41
PDLIM7-212ENST00000504380 ACSBG1Q96GR2 724 aa17.59■□□□□ 0.41
PDLIM7-212ENST00000504380 MAPK8IP3Q9UPT6 1336 aa17.58■□□□□ 0.4
PDLIM7-212ENST00000504380 IFNL2Q8IZJ0 200 aa17.58■□□□□ 0.4
PDLIM7-212ENST00000504380 RUNDC1Q96C34 613 aa17.58■□□□□ 0.4
PDLIM7-212ENST00000504380 PNNQ9H307 717 aaKnown RBP17.58■□□□□ 0.4
PDLIM7-212ENST00000504380 RRP7AQ9Y3A4 280 aaKnown RBP17.58■□□□□ 0.4
PDLIM7-212ENST00000504380 NEFMP07197 916 aa17.57■□□□□ 0.4
PDLIM7-212ENST00000504380 C1orf141Q5JVX7 400 aa17.57■□□□□ 0.4
PDLIM7-212ENST00000504380 MPRIPQ6WCQ1 1025 aa17.57■□□□□ 0.4
PDLIM7-212ENST00000504380 PTF1AQ7RTS3 328 aa17.57■□□□□ 0.4
PDLIM7-212ENST00000504380 NEUROD2Q15784 382 aa17.56■□□□□ 0.4
PDLIM7-212ENST00000504380 AKAP4Q5JQC9 854 aa17.56■□□□□ 0.4
PDLIM7-212ENST00000504380 GAS2L2Q8NHY3 880 aa17.56■□□□□ 0.4
PDLIM7-212ENST00000504380 APAF1O14727 1248 aa17.55■□□□□ 0.4
PDLIM7-212ENST00000504380 KCNQ2O43526 872 aa17.55■□□□□ 0.4
PDLIM7-212ENST00000504380 NFE2L2Q16236 605 aa17.55■□□□□ 0.4
PDLIM7-212ENST00000504380 FAM196AQ6ZSG2 479 aa17.55■□□□□ 0.4
PDLIM7-212ENST00000504380 LGR6Q9HBX8 967 aa17.55■□□□□ 0.4
PDLIM7-212ENST00000504380 KAT6BQ8WYB5 2073 aa17.55■□□□□ 0.4
PDLIM7-212ENST00000504380 TMPOP42166 694 aaKnown RBP17.54■□□□□ 0.4
PDLIM7-212ENST00000504380 DCTN1Q14203 1278 aa17.54■□□□□ 0.4
PDLIM7-212ENST00000504380 NKX1-1Q15270 411 aaPredicted RBP17.54■□□□□ 0.4
PDLIM7-212ENST00000504380 PLEKHG2Q9H7P9 1386 aa17.53■□□□□ 0.4
PDLIM7-212ENST00000504380 GNAT3A8MTJ3 354 aa17.53■□□□□ 0.4
PDLIM7-212ENST00000504380 TRIM37O94972 964 aa17.53■□□□□ 0.4
PDLIM7-212ENST00000504380 PRIM1P49642 420 aaKnown RBP17.53■□□□□ 0.4
PDLIM7-212ENST00000504380 SYTL4Q96C24 671 aaPredicted RBP17.53■□□□□ 0.4
PDLIM7-212ENST00000504380 KDM6AO15550 1401 aaPredicted RBP17.53■□□□□ 0.4
PDLIM7-212ENST00000504380 DLG5Q8TDM6 1919 aa17.53■□□□□ 0.4
PDLIM7-212ENST00000504380 MAP3K5Q99683 1374 aa17.53■□□□□ 0.4
PDLIM7-212ENST00000504380 DOT1LQ8TEK3 1739 aa17.52■□□□□ 0.4
PDLIM7-212ENST00000504380 TOGARAM1Q9Y4F4 1720 aa17.52■□□□□ 0.4
PDLIM7-212ENST00000504380 RNMTO43148 476 aaKnown RBP17.52■□□□□ 0.4
PDLIM7-212ENST00000504380 RIPK4P57078 832 aa17.52■□□□□ 0.4
PDLIM7-212ENST00000504380 SF3B2Q13435 895 aaKnown RBP17.52■□□□□ 0.4
PDLIM7-212ENST00000504380 MCM10Q7L590 875 aa17.52■□□□□ 0.4
PDLIM7-212ENST00000504380 DEFB132Q7Z7B7 95 aa17.52■□□□□ 0.4
PDLIM7-212ENST00000504380 SALL2Q9Y467 1007 aaPredicted RBP17.52■□□□□ 0.4
PDLIM7-212ENST00000504380 SBF2Q86WG5 1849 aa17.51■□□□□ 0.39
PDLIM7-212ENST00000504380 LRP5O75197 1615 aa17.51■□□□□ 0.39
PDLIM7-212ENST00000504380 IL17REQ8NFR9 667 aa17.51■□□□□ 0.39
PDLIM7-212ENST00000504380 THUMPD2Q9BTF0 503 aaKnown RBP17.51■□□□□ 0.39
PDLIM7-212ENST00000504380 HSP90AB1P08238 724 aaKnown RBP17.5■□□□□ 0.39
PDLIM7-212ENST00000504380 DCAF5Q96JK2 942 aa17.5■□□□□ 0.39
PDLIM7-212ENST00000504380 VIRMAQ69YN4 1812 aaKnown RBP17.49■□□□□ 0.39
PDLIM7-212ENST00000504380 SCN11AQ9UI33 1791 aa17.48■□□□□ 0.39
PDLIM7-212ENST00000504380 BCL9O00512 1426 aa17.48■□□□□ 0.39
PDLIM7-212ENST00000504380 RTF1Q92541 710 aaKnown RBP17.48■□□□□ 0.39
PDLIM7-212ENST00000504380 TRIM35Q9UPQ4 493 aa17.48■□□□□ 0.39
PDLIM7-212ENST00000504380 ITGB4P16144 1822 aa17.48■□□□□ 0.39
PDLIM7-212ENST00000504380 CABP4P57796 275 aa17.47■□□□□ 0.39
PDLIM7-212ENST00000504380 PIGBQ92521 554 aa17.47■□□□□ 0.39
PDLIM7-212ENST00000504380 NHSQ6T4R5 1651 aa17.46■□□□□ 0.39
PDLIM7-212ENST00000504380 NFATC2IPQ8NCF5 419 aa17.46■□□□□ 0.39
PDLIM7-212ENST00000504380 BCL11BQ9C0K0 894 aaPredicted RBP17.46■□□□□ 0.39
PDLIM7-212ENST00000504380 ERVV-2B6SEH9 535 aa17.45■□□□□ 0.38
PDLIM7-212ENST00000504380 HTATSF1O43719 755 aaKnown RBP17.45■□□□□ 0.38
PDLIM7-212ENST00000504380 SLC52A2Q9HAB3 445 aa17.45■□□□□ 0.38
PDLIM7-212ENST00000504380 TMOD3Q9NYL9 352 aa17.45■□□□□ 0.38
PDLIM7-212ENST00000504380 ADAMTS7Q9UKP4 1686 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms