RNA–Protein interactions for RNA: ENST00000498339.1

CDK9-205, Transcript of cyclin dependent kinase 9, humanhuman

TSL 2

Gene CDK9, Length 458 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-205ENST00000498339 C5P01031 1676 aa16.62■□□□□ 0.25
CDK9-205ENST00000498339 ANKRD36BQ8N2N9 1353 aa16.62■□□□□ 0.25
CDK9-205ENST00000498339 EDC4Q6P2E9 1401 aaKnown RBP16.62■□□□□ 0.25
CDK9-205ENST00000498339 YBX3P16989 372 aaKnown RBP eCLIP16.61■□□□□ 0.25
CDK9-205ENST00000498339 PRIM1P49642 420 aaKnown RBP16.61■□□□□ 0.25
CDK9-205ENST00000498339 CCNL1Q9UK58 526 aaPredicted RBP16.61■□□□□ 0.25
CDK9-205ENST00000498339 ATP10DQ9P241 1426 aa16.61■□□□□ 0.25
CDK9-205ENST00000498339 MSL1Q68DK7 614 aa16.6■□□□□ 0.25
CDK9-205ENST00000498339 NEUROD1Q13562 356 aa16.58■□□□□ 0.24
CDK9-205ENST00000498339 USP47Q96K76 1375 aa16.58■□□□□ 0.24
CDK9-205ENST00000498339 TAF1LQ8IZX4 1826 aa16.58■□□□□ 0.24
CDK9-205ENST00000498339 A0A1W2PP64 1363 aa16.57■□□□□ 0.24
CDK9-205ENST00000498339 NSD2O96028 1365 aa16.57■□□□□ 0.24
CDK9-205ENST00000498339 ZNF526Q8TF50 670 aaPredicted RBP16.57■□□□□ 0.24
CDK9-205ENST00000498339 IP6K1Q92551 441 aa16.57■□□□□ 0.24
CDK9-205ENST00000498339 GPBP1L1Q9HC44 474 aaPredicted RBP16.57■□□□□ 0.24
CDK9-205ENST00000498339 TERF2IPQ9NYB0 399 aa16.57■□□□□ 0.24
CDK9-205ENST00000498339 SIN3AQ96ST3 1273 aa16.56■□□□□ 0.24
CDK9-205ENST00000498339 SLC12A5Q9H2X9 1139 aa16.56■□□□□ 0.24
CDK9-205ENST00000498339 MEGF6O75095 1541 aa16.55■□□□□ 0.24
CDK9-205ENST00000498339 AMPHP49418 695 aa16.55■□□□□ 0.24
CDK9-205ENST00000498339 COL23A1Q86Y22 540 aaPredicted RBP16.55■□□□□ 0.24
CDK9-205ENST00000498339 ZCRB1Q8TBF4 217 aaKnown RBP16.55■□□□□ 0.24
CDK9-205ENST00000498339 CARD11Q9BXL7 1154 aa16.54■□□□□ 0.24
CDK9-205ENST00000498339 HOXC9P31274 260 aa16.52■□□□□ 0.24
CDK9-205ENST00000498339 COG3Q96JB2 828 aa16.52■□□□□ 0.24
CDK9-205ENST00000498339 MAP3K19Q56UN5 1328 aa16.51■□□□□ 0.23
CDK9-205ENST00000498339 WWC3Q9ULE0 1092 aa16.51■□□□□ 0.23
CDK9-205ENST00000498339 ITGB4P16144 1822 aa16.51■□□□□ 0.23
CDK9-205ENST00000498339 SMG6Q86US8 1419 aaKnown RBP16.51■□□□□ 0.23
CDK9-205ENST00000498339 C4BP0C0L5 1744 aa16.5■□□□□ 0.23
CDK9-205ENST00000498339 HSPA6P17066 643 aa16.5■□□□□ 0.23
CDK9-205ENST00000498339 CD2APQ9Y5K6 639 aa16.5■□□□□ 0.23
CDK9-205ENST00000498339 UBR3Q6ZT12 1888 aa16.49■□□□□ 0.23
CDK9-205ENST00000498339 USHBP1Q8N6Y0 703 aa16.49■□□□□ 0.23
CDK9-205ENST00000498339 RAPGEF4Q8WZA2 1011 aa16.49■□□□□ 0.23
CDK9-205ENST00000498339 ADCY9O60503 1353 aa16.49■□□□□ 0.23
CDK9-205ENST00000498339 FLAD1Q8NFF5 587 aa16.48■□□□□ 0.23
CDK9-205ENST00000498339 RTL1A6NKG5 1358 aa16.48■□□□□ 0.23
CDK9-205ENST00000498339 PALLDQ8WX93 1383 aa16.48■□□□□ 0.23
CDK9-205ENST00000498339 TOGARAM1Q9Y4F4 1720 aa16.48■□□□□ 0.23
CDK9-205ENST00000498339 FBLN1P23142 703 aa16.47■□□□□ 0.23
CDK9-205ENST00000498339 AK7Q96M32 723 aa16.47■□□□□ 0.23
CDK9-205ENST00000498339 IGSF1Q8N6C5 1336 aa16.46■□□□□ 0.23
CDK9-205ENST00000498339 PHF14O94880 888 aa16.46■□□□□ 0.23
CDK9-205ENST00000498339 TATP17735 454 aaPredicted RBP16.46■□□□□ 0.23
CDK9-205ENST00000498339 HMGB2P26583 209 aaKnown RBP16.46■□□□□ 0.23
CDK9-205ENST00000498339 KIF20BQ96Q89 1820 aa16.46■□□□□ 0.23
CDK9-205ENST00000498339 CGNL1Q0VF96 1302 aa16.45■□□□□ 0.22
CDK9-205ENST00000498339 PCDH11XQ9BZA7 1347 aa16.45■□□□□ 0.22
CDK9-205ENST00000498339 PCDH11YQ9BZA8 1340 aa16.45■□□□□ 0.22
CDK9-205ENST00000498339 RRS1Q15050 365 aaKnown RBP16.45■□□□□ 0.22
CDK9-205ENST00000498339 MPRIPQ6WCQ1 1025 aa16.45■□□□□ 0.22
CDK9-205ENST00000498339 NBPF6Q5VWK0 638 aa16.44■□□□□ 0.22
CDK9-205ENST00000498339 NBPF4Q96M43 638 aa16.44■□□□□ 0.22
CDK9-205ENST00000498339 NSD3Q9BZ95 1437 aa16.44■□□□□ 0.22
CDK9-205ENST00000498339 PKD1L3Q7Z443 1732 aa16.42■□□□□ 0.22
CDK9-205ENST00000498339 N4BP2Q86UW6 1770 aaPredicted RBP16.41■□□□□ 0.22
CDK9-205ENST00000498339 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.4■□□□□ 0.22
CDK9-205ENST00000498339 SMARCC1Q92922 1105 aaPredicted RBP16.4■□□□□ 0.22
CDK9-205ENST00000498339 PUS7Q96PZ0 661 aaKnown RBP16.4■□□□□ 0.22
CDK9-205ENST00000498339 CICQ96RK0 1608 aaPredicted RBP16.39■□□□□ 0.21
CDK9-205ENST00000498339 SMIM5Q71RC9 77 aa16.39■□□□□ 0.21
CDK9-205ENST00000498339 GGNBP2Q9H3C7 697 aa16.39■□□□□ 0.21
CDK9-205ENST00000498339 TONSLQ96HA7 1378 aa16.38■□□□□ 0.21
CDK9-205ENST00000498339 MAP2P11137 1827 aaKnown RBP16.38■□□□□ 0.21
CDK9-205ENST00000498339 AMIGO3Q86WK7 504 aa16.38■□□□□ 0.21
CDK9-205ENST00000498339 KIF3CO14782 793 aa16.37■□□□□ 0.21
CDK9-205ENST00000498339 KIF13BQ9NQT8 1826 aa16.37■□□□□ 0.21
CDK9-205ENST00000498339 FLT4P35916 1363 aa16.37■□□□□ 0.21
CDK9-205ENST00000498339 SSFA2P28290 1259 aa16.36■□□□□ 0.21
CDK9-205ENST00000498339 APLP1P51693 650 aa16.36■□□□□ 0.21
CDK9-205ENST00000498339 HSP90AB2PQ58FF8 381 aa16.36■□□□□ 0.21
CDK9-205ENST00000498339 INSRP06213 1382 aa16.36■□□□□ 0.21
CDK9-205ENST00000498339 ST20-MTHFSA0A0A6YYL1 179 aa16.35■□□□□ 0.21
CDK9-205ENST00000498339 CYP27B1O15528 508 aa16.35■□□□□ 0.21
CDK9-205ENST00000498339 WDR90Q96KV7 1748 aa16.35■□□□□ 0.21
CDK9-205ENST00000498339 KIAA1551Q9HCM1 1747 aa16.35■□□□□ 0.21
CDK9-205ENST00000498339 GNPATO15228 680 aa16.34■□□□□ 0.21
CDK9-205ENST00000498339 LOC102724428A0A0B4J2F2 783 aa16.33■□□□□ 0.2
CDK9-205ENST00000498339 FYB1O15117 783 aa16.33■□□□□ 0.2
CDK9-205ENST00000498339 SIK1P57059 783 aa16.33■□□□□ 0.2
CDK9-205ENST00000498339 LINC00116Q8NCU8 138 aa16.33■□□□□ 0.2
CDK9-205ENST00000498339 PIGBQ92521 554 aa16.33■□□□□ 0.2
CDK9-205ENST00000498339 TESK2Q96S53 571 aa16.33■□□□□ 0.2
CDK9-205ENST00000498339 PXDNLA1KZ92 1463 aa16.32■□□□□ 0.2
CDK9-205ENST00000498339 SLC24A1O60721 1099 aa16.32■□□□□ 0.2
CDK9-205ENST00000498339 MMP10P09238 476 aa16.32■□□□□ 0.2
CDK9-205ENST00000498339 TMOD3Q9NYL9 352 aa16.32■□□□□ 0.2
CDK9-205ENST00000498339 BCS1LQ9Y276 419 aa16.32■□□□□ 0.2
CDK9-205ENST00000498339 BRCA1P38398 1863 aaKnown RBP16.31■□□□□ 0.2
CDK9-205ENST00000498339 TOMM70O94826 608 aa16.31■□□□□ 0.2
CDK9-205ENST00000498339 SPG7Q9UQ90 795 aa16.31■□□□□ 0.2
CDK9-205ENST00000498339 KIF24Q5T7B8 1368 aa16.3■□□□□ 0.2
CDK9-205ENST00000498339 PPM1GO15355 546 aaPredicted RBP16.3■□□□□ 0.2
CDK9-205ENST00000498339 ATP6V1AP38606 617 aa16.3■□□□□ 0.2
CDK9-205ENST00000498339 ANKRD26Q9UPS8 1709 aa16.3■□□□□ 0.2
CDK9-205ENST00000498339 ARFGEF1Q9Y6D6 1849 aa16.29■□□□□ 0.2
CDK9-205ENST00000498339 C4AP0C0L4 1744 aa16.29■□□□□ 0.2
CDK9-205ENST00000498339 ARHGAP27Q6ZUM4 889 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms