RNA–Protein interactions for RNA: ENST00000497544.2

CTSD-206, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 783 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-206ENST00000497544 PTGER2P43116 358 aa26.91■■□□□ 1.9
CTSD-206ENST00000497544 LARP1Q6PKG0 1096 aaKnown RBP26.91■■□□□ 1.9
CTSD-206ENST00000497544 ERBB3P21860 1342 aa26.9■■□□□ 1.9
CTSD-206ENST00000497544 WDR17Q8IZU2 1322 aa26.9■■□□□ 1.9
CTSD-206ENST00000497544 GIGYF1O75420 1035 aaPredicted RBP26.9■■□□□ 1.9
CTSD-206ENST00000497544 ZBTB7AO95365 584 aa26.89■■□□□ 1.9
CTSD-206ENST00000497544 PDE3BQ13370 1112 aa26.89■■□□□ 1.9
CTSD-206ENST00000497544 NLRP2Q9NX02 1062 aa26.89■■□□□ 1.9
CTSD-206ENST00000497544 DIAPH1O60610 1272 aaKnown RBP26.88■■□□□ 1.89
CTSD-206ENST00000497544 EIF4A2Q14240 407 aaKnown RBP26.88■■□□□ 1.89
CTSD-206ENST00000497544 SYT17Q9BSW7 474 aa26.88■■□□□ 1.89
CTSD-206ENST00000497544 FHDC1Q9C0D6 1143 aaPredicted RBP26.88■■□□□ 1.89
CTSD-206ENST00000497544 SBF2Q86WG5 1849 aa26.86■■□□□ 1.89
CTSD-206ENST00000497544 USP35Q9P2H5 1018 aa26.85■■□□□ 1.89
CTSD-206ENST00000497544 CRB1P82279 1406 aa26.84■■□□□ 1.89
CTSD-206ENST00000497544 IL13P35225 146 aa26.84■■□□□ 1.89
CTSD-206ENST00000497544 CARD10Q9BWT7 1032 aa26.84■■□□□ 1.89
CTSD-206ENST00000497544 NUDCQ9Y266 331 aa26.84■■□□□ 1.89
CTSD-206ENST00000497544 ATF5Q9Y2D1 282 aaPredicted RBP26.83■■□□□ 1.89
CTSD-206ENST00000497544 NBPF6Q5VWK0 638 aa26.82■■□□□ 1.88
CTSD-206ENST00000497544 BARGINQ6ZT62 677 aa26.82■■□□□ 1.88
CTSD-206ENST00000497544 NBPF4Q96M43 638 aa26.82■■□□□ 1.88
CTSD-206ENST00000497544 EYA1Q99502 592 aa26.82■■□□□ 1.88
CTSD-206ENST00000497544 PARP4Q9UKK3 1724 aaKnown RBP26.8■■□□□ 1.88
CTSD-206ENST00000497544 TCP11L2Q8N4U5 519 aa26.8■■□□□ 1.88
CTSD-206ENST00000497544 SHANK3Q9BYB0 1731 aa26.79■■□□□ 1.88
CTSD-206ENST00000497544 RGPD2P0DJD1 1756 aa26.79■■□□□ 1.88
CTSD-206ENST00000497544 U2SURPO15042 1029 aaKnown RBP26.79■■□□□ 1.88
CTSD-206ENST00000497544 THRAP3Q9Y2W1 955 aaKnown RBP26.79■■□□□ 1.88
CTSD-206ENST00000497544 FAM208AQ9UK61 1670 aaKnown RBP26.79■■□□□ 1.88
CTSD-206ENST00000497544 USHBP1Q8N6Y0 703 aa26.77■■□□□ 1.88
CTSD-206ENST00000497544 COL3A1P02461 1466 aaPredicted RBP26.76■■□□□ 1.87
CTSD-206ENST00000497544 PLSCR1O15162 318 aa26.75■■□□□ 1.87
CTSD-206ENST00000497544 MIER1Q8N108 512 aa26.74■■□□□ 1.87
CTSD-206ENST00000497544 MRS2Q9HD23 443 aa26.74■■□□□ 1.87
CTSD-206ENST00000497544 IGSF1Q8N6C5 1336 aa26.73■■□□□ 1.87
CTSD-206ENST00000497544 U2AF1L5P0DN76 240 aaPredicted RBP26.73■■□□□ 1.87
CTSD-206ENST00000497544 U2AF1Q01081 240 aaKnown RBP eCLIP26.73■■□□□ 1.87
CTSD-206ENST00000497544 CCDC184Q52MB2 194 aa26.73■■□□□ 1.87
CTSD-206ENST00000497544 SULT6B1Q6IMI4 303 aa26.73■■□□□ 1.87
CTSD-206ENST00000497544 SGIP1Q9BQI5 828 aa26.73■■□□□ 1.87
CTSD-206ENST00000497544 RAPGEF4Q8WZA2 1011 aa26.72■■□□□ 1.87
CTSD-206ENST00000497544 CDCA7Q9BWT1 371 aaPredicted RBP26.71■■□□□ 1.87
CTSD-206ENST00000497544 BCL11BQ9C0K0 894 aaPredicted RBP26.71■■□□□ 1.87
CTSD-206ENST00000497544 HMOX1P09601 288 aa26.7■■□□□ 1.86
CTSD-206ENST00000497544 IL2RBP14784 551 aa26.7■■□□□ 1.86
CTSD-206ENST00000497544 WDR43Q15061 677 aaKnown RBP eCLIP26.7■■□□□ 1.86
CTSD-206ENST00000497544 OVOS2A0A0G2JMS6 1433 aa26.69■■□□□ 1.86
CTSD-206ENST00000497544 TATP17735 454 aaPredicted RBP26.69■■□□□ 1.86
CTSD-206ENST00000497544 PROM2Q8N271 834 aa26.69■■□□□ 1.86
CTSD-206ENST00000497544 CCER2I3L3R5 266 aa26.68■■□□□ 1.86
CTSD-206ENST00000497544 PTF1AQ7RTS3 328 aa26.67■■□□□ 1.86
CTSD-206ENST00000497544 AEBP1Q8IUX7 1158 aa26.67■■□□□ 1.86
CTSD-206ENST00000497544 MAP3K5Q99683 1374 aa26.67■■□□□ 1.86
CTSD-206ENST00000497544 GOLGB1Q14789 3259 aaKnown RBP26.66■■□□□ 1.86
CTSD-206ENST00000497544 MTFR1LQ9H019 292 aa26.66■■□□□ 1.86
CTSD-206ENST00000497544 LRRC37A3O60309 1634 aa26.65■■□□□ 1.86
CTSD-206ENST00000497544 EXOC5O00471 708 aa26.65■■□□□ 1.86
CTSD-206ENST00000497544 NCAPD2Q15021 1401 aa26.65■■□□□ 1.86
CTSD-206ENST00000497544 FCHSD2O94868 740 aa26.64■■□□□ 1.86
CTSD-206ENST00000497544 GPR162Q16538 588 aa26.64■■□□□ 1.86
CTSD-206ENST00000497544 PNNQ9H307 717 aaKnown RBP26.63■■□□□ 1.85
CTSD-206ENST00000497544 KDRP35968 1356 aa26.62■■□□□ 1.85
CTSD-206ENST00000497544 DDB1Q16531 1140 aa26.62■■□□□ 1.85
CTSD-206ENST00000497544 ARXQ96QS3 562 aa26.62■■□□□ 1.85
CTSD-206ENST00000497544 STK32BQ9NY57 414 aa26.62■■□□□ 1.85
CTSD-206ENST00000497544 PNISRQ8TF01 805 aaKnown RBP26.61■■□□□ 1.85
CTSD-206ENST00000497544 NEFMP07197 916 aa26.6■■□□□ 1.85
CTSD-206ENST00000497544 SLC15A2Q16348 729 aa26.6■■□□□ 1.85
CTSD-206ENST00000497544 ZCRB1Q8TBF4 217 aaKnown RBP26.6■■□□□ 1.85
CTSD-206ENST00000497544 RSPH6AQ9H0K4 717 aa26.6■■□□□ 1.85
CTSD-206ENST00000497544 ADAMTS8Q9UP79 889 aa26.6■■□□□ 1.85
CTSD-206ENST00000497544 PRKAR2BP31323 418 aa26.59■■□□□ 1.85
CTSD-206ENST00000497544 PLEKHO1Q53GL0 409 aaPredicted RBP26.59■■□□□ 1.85
CTSD-206ENST00000497544 SPG7Q9UQ90 795 aa26.59■■□□□ 1.85
CTSD-206ENST00000497544 WNK3Q9BYP7 1800 aa26.59■■□□□ 1.85
CTSD-206ENST00000497544 MEGF6O75095 1541 aa26.59■■□□□ 1.85
CTSD-206ENST00000497544 AMOTQ4VCS5 1084 aa26.57■■□□□ 1.84
CTSD-206ENST00000497544 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.57■■□□□ 1.84
CTSD-206ENST00000497544 FAM9BQ8IZU0 186 aa26.56■■□□□ 1.84
CTSD-206ENST00000497544 TXNRD1Q16881 649 aa26.54■■□□□ 1.84
CTSD-206ENST00000497544 DDX54Q8TDD1 881 aaKnown RBP26.54■■□□□ 1.84
CTSD-206ENST00000497544 HSPA6P17066 643 aa26.53■■□□□ 1.84
CTSD-206ENST00000497544 PLEKHG2Q9H7P9 1386 aa26.52■■□□□ 1.84
CTSD-206ENST00000497544 MAPK8IP3Q9UPT6 1336 aa26.51■■□□□ 1.83
CTSD-206ENST00000497544 PHACTR3Q96KR7 559 aa26.51■■□□□ 1.83
CTSD-206ENST00000497544 PLEKHF1Q96S99 279 aa26.51■■□□□ 1.83
CTSD-206ENST00000497544 TNS2Q63HR2 1409 aa26.5■■□□□ 1.83
CTSD-206ENST00000497544 PCDH11XQ9BZA7 1347 aa26.5■■□□□ 1.83
CTSD-206ENST00000497544 PCDH11YQ9BZA8 1340 aa26.5■■□□□ 1.83
CTSD-206ENST00000497544 ZNF530Q6P9A1 599 aaPredicted RBP26.5■■□□□ 1.83
CTSD-206ENST00000497544 CCDC146Q8IYE0 955 aa26.5■■□□□ 1.83
CTSD-206ENST00000497544 PELP1Q8IZL8 1130 aaKnown RBP26.5■■□□□ 1.83
CTSD-206ENST00000497544 RUNDC1Q96C34 613 aa26.5■■□□□ 1.83
CTSD-206ENST00000497544 MTHFSDQ2M296 383 aaKnown RBP26.49■■□□□ 1.83
CTSD-206ENST00000497544 GAS2L2Q8NHY3 880 aa26.49■■□□□ 1.83
CTSD-206ENST00000497544 PAPPAQ13219 1627 aa26.49■■□□□ 1.83
CTSD-206ENST00000497544 C1orf141Q5JVX7 400 aa26.48■■□□□ 1.83
CTSD-206ENST00000497544 IFNL2Q8IZJ0 200 aa26.48■■□□□ 1.83
CTSD-206ENST00000497544 MARCH10Q8NA82 808 aaPredicted RBP26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms