RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 POTEAQ6S8J7 498 aa28.89■■■□□ 2.22
C9orf3-222ENST00000496567 PARP4Q9UKK3 1724 aaKnown RBP28.89■■■□□ 2.22
C9orf3-222ENST00000496567 MEGF6O75095 1541 aa28.89■■■□□ 2.21
C9orf3-222ENST00000496567 ONECUT3O60422 494 aaPredicted RBP28.88■■■□□ 2.21
C9orf3-222ENST00000496567 OVOS2A0A0G2JMS6 1433 aa28.86■■■□□ 2.21
C9orf3-222ENST00000496567 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.85■■■□□ 2.21
C9orf3-222ENST00000496567 A0A0G2JS52 829 aa28.84■■■□□ 2.21
C9orf3-222ENST00000496567 MYT1Q01538 1121 aa28.84■■■□□ 2.21
C9orf3-222ENST00000496567 AMOTQ4VCS5 1084 aa28.84■■■□□ 2.21
C9orf3-222ENST00000496567 PLEKHO1Q53GL0 409 aaPredicted RBP28.84■■■□□ 2.21
C9orf3-222ENST00000496567 PLEKHF1Q96S99 279 aa28.84■■■□□ 2.21
C9orf3-222ENST00000496567 MAPK8IP3Q9UPT6 1336 aa28.84■■■□□ 2.21
C9orf3-222ENST00000496567 RUNDC1Q96C34 613 aa28.84■■■□□ 2.21
C9orf3-222ENST00000496567 SPG7Q9UQ90 795 aa28.84■■■□□ 2.21
C9orf3-222ENST00000496567 EXOC5O00471 708 aa28.83■■■□□ 2.21
C9orf3-222ENST00000496567 THSD7AQ9UPZ6 1657 aa28.83■■■□□ 2.21
C9orf3-222ENST00000496567 DDB1Q16531 1140 aa28.82■■■□□ 2.2
C9orf3-222ENST00000496567 ZCRB1Q8TBF4 217 aaKnown RBP28.82■■■□□ 2.2
C9orf3-222ENST00000496567 CCDC146Q8IYE0 955 aa28.81■■■□□ 2.2
C9orf3-222ENST00000496567 SEPT12Q8IYM1 358 aa28.8■■■□□ 2.2
C9orf3-222ENST00000496567 PHACTR3Q96KR7 559 aa28.79■■■□□ 2.2
C9orf3-222ENST00000496567 PKD1L3Q7Z443 1732 aa28.79■■■□□ 2.2
C9orf3-222ENST00000496567 TNS2Q63HR2 1409 aa28.78■■■□□ 2.2
C9orf3-222ENST00000496567 LRRC37A3O60309 1634 aa28.78■■■□□ 2.2
C9orf3-222ENST00000496567 GAS2L2Q8NHY3 880 aa28.78■■■□□ 2.2
C9orf3-222ENST00000496567 PCDH11XQ9BZA7 1347 aa28.77■■■□□ 2.2
C9orf3-222ENST00000496567 PCDH11YQ9BZA8 1340 aa28.77■■■□□ 2.2
C9orf3-222ENST00000496567 MTHFSDQ2M296 383 aaKnown RBP28.76■■■□□ 2.19
C9orf3-222ENST00000496567 PDE3BQ13370 1112 aa28.75■■■□□ 2.19
C9orf3-222ENST00000496567 ZNF530Q6P9A1 599 aaPredicted RBP28.75■■■□□ 2.19
C9orf3-222ENST00000496567 C1orf141Q5JVX7 400 aa28.73■■■□□ 2.19
C9orf3-222ENST00000496567 NFE2L2Q16236 605 aa28.72■■■□□ 2.19
C9orf3-222ENST00000496567 IFNL2Q8IZJ0 200 aa28.72■■■□□ 2.19
C9orf3-222ENST00000496567 DDX54Q8TDD1 881 aaKnown RBP28.72■■■□□ 2.19
C9orf3-222ENST00000496567 RGS12O14924 1447 aa28.71■■■□□ 2.19
C9orf3-222ENST00000496567 SHANK3Q9BYB0 1731 aa28.71■■■□□ 2.19
C9orf3-222ENST00000496567 APAF1O14727 1248 aa28.71■■■□□ 2.19
C9orf3-222ENST00000496567 AKAP4Q5JQC9 854 aa28.71■■■□□ 2.19
C9orf3-222ENST00000496567 CYP27B1O15528 508 aa28.7■■■□□ 2.18
C9orf3-222ENST00000496567 PHKG2P15735 406 aa28.69■■■□□ 2.18
C9orf3-222ENST00000496567 TMPOP42166 694 aaKnown RBP28.69■■■□□ 2.18
C9orf3-222ENST00000496567 KRT27Q7Z3Y8 459 aa28.68■■■□□ 2.18
C9orf3-222ENST00000496567 HSP90AB1P08238 724 aaKnown RBP28.67■■■□□ 2.18
C9orf3-222ENST00000496567 GNAT3A8MTJ3 354 aa28.67■■■□□ 2.18
C9orf3-222ENST00000496567 MARCH10Q8NA82 808 aaPredicted RBP28.67■■■□□ 2.18
C9orf3-222ENST00000496567 MAP3K5Q99683 1374 aa28.66■■■□□ 2.18
C9orf3-222ENST00000496567 RIPK4P57078 832 aa28.66■■■□□ 2.18
C9orf3-222ENST00000496567 BRWD3Q6RI45 1802 aa28.66■■■□□ 2.18
C9orf3-222ENST00000496567 NKX1-1Q15270 411 aaPredicted RBP28.64■■■□□ 2.18
C9orf3-222ENST00000496567 NEUROD2Q15784 382 aa28.64■■■□□ 2.18
C9orf3-222ENST00000496567 RRP7AQ9Y3A4 280 aaKnown RBP28.64■■■□□ 2.18
C9orf3-222ENST00000496567 HTATSF1O43719 755 aaKnown RBP28.63■■■□□ 2.17
C9orf3-222ENST00000496567 LMOD3Q0VAK6 560 aa28.63■■■□□ 2.17
C9orf3-222ENST00000496567 NGEFQ8N5V2 710 aa28.63■■■□□ 2.17
C9orf3-222ENST00000496567 RTF1Q92541 710 aaKnown RBP28.63■■■□□ 2.17
C9orf3-222ENST00000496567 NCBP3Q53F19 620 aaKnown RBP28.62■■■□□ 2.17
C9orf3-222ENST00000496567 DCAF5Q96JK2 942 aa28.62■■■□□ 2.17
C9orf3-222ENST00000496567 DLG5Q8TDM6 1919 aa28.62■■■□□ 2.17
C9orf3-222ENST00000496567 MPRIPQ6WCQ1 1025 aa28.59■■■□□ 2.17
C9orf3-222ENST00000496567 BCL9O00512 1426 aa28.57■■■□□ 2.16
C9orf3-222ENST00000496567 CCDC27Q2M243 656 aa28.57■■■□□ 2.16
C9orf3-222ENST00000496567 FAM196AQ6ZSG2 479 aa28.57■■■□□ 2.16
C9orf3-222ENST00000496567 SENP3-EIF4A1A0A087X0R7 540 aa28.56■■■□□ 2.16
C9orf3-222ENST00000496567 RNMTO43148 476 aaKnown RBP28.56■■■□□ 2.16
C9orf3-222ENST00000496567 KDM6AO15550 1401 aaPredicted RBP28.55■■■□□ 2.16
C9orf3-222ENST00000496567 FAM182BQ5T319 152 aa28.55■■■□□ 2.16
C9orf3-222ENST00000496567 IL17REQ8NFR9 667 aa28.55■■■□□ 2.16
C9orf3-222ENST00000496567 TRIM35Q9UPQ4 493 aa28.55■■■□□ 2.16
C9orf3-222ENST00000496567 MCM10Q7L590 875 aa28.54■■■□□ 2.16
C9orf3-222ENST00000496567 LGR6Q9HBX8 967 aa28.54■■■□□ 2.16
C9orf3-222ENST00000496567 SCN11AQ9UI33 1791 aa28.54■■■□□ 2.16
C9orf3-222ENST00000496567 ADAMTS7Q9UKP4 1686 aa28.54■■■□□ 2.16
C9orf3-222ENST00000496567 ERVV-2B6SEH9 535 aa28.54■■■□□ 2.16
C9orf3-222ENST00000496567 SALL2Q9Y467 1007 aaPredicted RBP28.54■■■□□ 2.16
C9orf3-222ENST00000496567 CEMIPQ8WUJ3 1361 aa28.53■■■□□ 2.16
C9orf3-222ENST00000496567 HNRNPUQ00839 825 aaKnown RBP eCLIP28.53■■■□□ 2.16
C9orf3-222ENST00000496567 DCTN1Q14203 1278 aa28.53■■■□□ 2.16
C9orf3-222ENST00000496567 VIRMAQ69YN4 1812 aaKnown RBP28.52■■■□□ 2.16
C9orf3-222ENST00000496567 TEFQ10587 303 aa28.5■■■□□ 2.15
C9orf3-222ENST00000496567 WWC1Q8IX03 1113 aa28.5■■■□□ 2.15
C9orf3-222ENST00000496567 CABP4P57796 275 aa28.5■■■□□ 2.15
C9orf3-222ENST00000496567 DOT1LQ8TEK3 1739 aa28.49■■■□□ 2.15
C9orf3-222ENST00000496567 CALD1Q05682 793 aaKnown RBP28.49■■■□□ 2.15
C9orf3-222ENST00000496567 ACSBG1Q96GR2 724 aa28.49■■■□□ 2.15
C9orf3-222ENST00000496567 TOGARAM1Q9Y4F4 1720 aa28.49■■■□□ 2.15
C9orf3-222ENST00000496567 SLC52A2Q9HAB3 445 aa28.48■■■□□ 2.15
C9orf3-222ENST00000496567 PRIM1P49642 420 aaKnown RBP28.47■■■□□ 2.15
C9orf3-222ENST00000496567 SYTL4Q96C24 671 aaPredicted RBP28.47■■■□□ 2.15
C9orf3-222ENST00000496567 THUMPD2Q9BTF0 503 aaKnown RBP28.47■■■□□ 2.15
C9orf3-222ENST00000496567 KAT6BQ8WYB5 2073 aa28.47■■■□□ 2.15
C9orf3-222ENST00000496567 TMOD3Q9NYL9 352 aa28.46■■■□□ 2.15
C9orf3-222ENST00000496567 MRC1P22897 1456 aa28.46■■■□□ 2.15
C9orf3-222ENST00000496567 NFATC2IPQ8NCF5 419 aa28.45■■■□□ 2.15
C9orf3-222ENST00000496567 SBF2Q86WG5 1849 aa28.45■■■□□ 2.14
C9orf3-222ENST00000496567 WDR63Q8IWG1 891 aa28.45■■■□□ 2.14
C9orf3-222ENST00000496567 ITGB4P16144 1822 aa28.44■■■□□ 2.14
C9orf3-222ENST00000496567 NHSQ6T4R5 1651 aa28.43■■■□□ 2.14
C9orf3-222ENST00000496567 TAF7Q15545 349 aaPredicted RBP28.43■■■□□ 2.14
C9orf3-222ENST00000496567 KCNQ2O43526 872 aa28.42■■■□□ 2.14
C9orf3-222ENST00000496567 ZNF521Q96K83 1311 aa28.42■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms