RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 TMPOP42166 694 aaKnown RBP15.57■□□□□ 0.08
PTPRF-215ENST00000496447 AMOTQ4VCS5 1084 aa15.57■□□□□ 0.08
PTPRF-215ENST00000496447 METTL24Q5JXM2 366 aa15.57■□□□□ 0.08
PTPRF-215ENST00000496447 MCM10Q7L590 875 aa15.57■□□□□ 0.08
PTPRF-215ENST00000496447 USHBP1Q8N6Y0 703 aa15.57■□□□□ 0.08
PTPRF-215ENST00000496447 RUFY1Q96T51 708 aa15.57■□□□□ 0.08
PTPRF-215ENST00000496447 TRAK2O60296 914 aa15.56■□□□□ 0.08
PTPRF-215ENST00000496447 SYCP1Q15431 976 aa15.56■□□□□ 0.08
PTPRF-215ENST00000496447 IL1RAPL2Q9NP60 686 aa15.56■□□□□ 0.08
PTPRF-215ENST00000496447 FIBPO43427 364 aa15.56■□□□□ 0.08
PTPRF-215ENST00000496447 RBM10P98175 930 aaKnown RBP15.56■□□□□ 0.08
PTPRF-215ENST00000496447 ARGLU1Q9NWB6 273 aaPredicted RBP15.56■□□□□ 0.08
PTPRF-215ENST00000496447 PIP4K2AP48426 406 aaPredicted RBP15.56■□□□□ 0.08
PTPRF-215ENST00000496447 PAF1Q8N7H5 531 aa15.56■□□□□ 0.08
PTPRF-215ENST00000496447 FMNL2Q96PY5 1086 aa15.56■□□□□ 0.08
PTPRF-215ENST00000496447 ZHX3Q9H4I2 956 aa15.56■□□□□ 0.08
PTPRF-215ENST00000496447 DUSP27Q5VZP5 1158 aa15.56■□□□□ 0.08
PTPRF-215ENST00000496447 FBXO31Q5XUX0 539 aaPredicted RBP15.56■□□□□ 0.08
PTPRF-215ENST00000496447 ABCF2Q9UG63 623 aa15.56■□□□□ 0.08
PTPRF-215ENST00000496447 MPRIPQ6WCQ1 1025 aa15.55■□□□□ 0.08
PTPRF-215ENST00000496447 SMC2O95347 1197 aa15.55■□□□□ 0.08
PTPRF-215ENST00000496447 MBD3O95983 291 aa15.55■□□□□ 0.08
PTPRF-215ENST00000496447 NME9Q86XW9 330 aa15.55■□□□□ 0.08
PTPRF-215ENST00000496447 ABCA10Q8WWZ4 1543 aa15.55■□□□□ 0.08
PTPRF-215ENST00000496447 AIDAQ96BJ3 306 aa15.55■□□□□ 0.08
PTPRF-215ENST00000496447 NOL7Q9UMY1 257 aaKnown RBP15.55■□□□□ 0.08
PTPRF-215ENST00000496447 RDXP35241 583 aaKnown RBP15.54■□□□□ 0.08
PTPRF-215ENST00000496447 BRPF1P55201 1214 aaPredicted RBP15.54■□□□□ 0.08
PTPRF-215ENST00000496447 CHD1LQ86WJ1 897 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 AEBP1Q8IUX7 1158 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 RNF214Q8ND24 703 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 CAMSAP2Q08AD1 1489 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 MPHOSPH10O00566 681 aaKnown RBP15.54■□□□□ 0.08
PTPRF-215ENST00000496447 CDKL5O76039 1030 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 CDR1P51861 262 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 CAGE1Q8TC20 777 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 DMRT2Q9Y5R5 561 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 TTLL5Q6EMB2 1281 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 LARP1Q6PKG0 1096 aaKnown RBP15.54■□□□□ 0.08
PTPRF-215ENST00000496447 BLOC1S2Q6QNY1 142 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 TRIM5Q9C035 493 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 PLB1Q6P1J6 1458 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 KIF14Q15058 1648 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 CWC27Q6UX04 472 aaKnown RBP15.54■□□□□ 0.08
PTPRF-215ENST00000496447 ZMYND15Q9H091 742 aa15.54■□□□□ 0.08
PTPRF-215ENST00000496447 RPAP2Q8IXW5 612 aaPredicted RBP15.53■□□□□ 0.08
PTPRF-215ENST00000496447 SMARCE1Q969G3 411 aa15.53■□□□□ 0.08
PTPRF-215ENST00000496447 LAMC3Q9Y6N6 1575 aa15.53■□□□□ 0.08
PTPRF-215ENST00000496447 CAVIN4Q5BKX8 364 aa15.53■□□□□ 0.08
PTPRF-215ENST00000496447 LRPPRCP42704 1394 aaKnown RBP15.53■□□□□ 0.08
PTPRF-215ENST00000496447 PPP6R1Q9UPN7 881 aa15.53■□□□□ 0.08
PTPRF-215ENST00000496447 AKAP2Q9Y2D5 859 aa15.53■□□□□ 0.08
PTPRF-215ENST00000496447 THUMPD2Q9BTF0 503 aaKnown RBP15.53■□□□□ 0.08
PTPRF-215ENST00000496447 PRPF40AO75400 957 aaKnown RBP15.53■□□□□ 0.08
PTPRF-215ENST00000496447 TAF7Q15545 349 aaPredicted RBP15.53■□□□□ 0.08
PTPRF-215ENST00000496447 MYD88Q99836 296 aa15.53■□□□□ 0.08
PTPRF-215ENST00000496447 PATL2C9JE40 543 aaKnown RBP15.52■□□□□ 0.08
PTPRF-215ENST00000496447 CAVIN1Q6NZI2 390 aaKnown RBP15.52■□□□□ 0.08
PTPRF-215ENST00000496447 AK7Q96M32 723 aa15.52■□□□□ 0.08
PTPRF-215ENST00000496447 WASLO00401 505 aaPredicted RBP15.52■□□□□ 0.08
PTPRF-215ENST00000496447 ANKIB1Q9P2G1 1089 aa15.52■□□□□ 0.08
PTPRF-215ENST00000496447 IFIT1P09914 478 aaKnown RBP15.52■□□□□ 0.07
PTPRF-215ENST00000496447 AKNAQ7Z591 1439 aa15.52■□□□□ 0.07
PTPRF-215ENST00000496447 ESPNB1AK53 854 aa15.52■□□□□ 0.07
PTPRF-215ENST00000496447 EXOC5O00471 708 aa15.52■□□□□ 0.07
PTPRF-215ENST00000496447 PDCL3Q9H2J4 239 aa15.52■□□□□ 0.07
PTPRF-215ENST00000496447 ZNF76P36508 570 aa15.51■□□□□ 0.07
PTPRF-215ENST00000496447 STIM1Q13586 685 aa15.51■□□□□ 0.07
PTPRF-215ENST00000496447 ME1P48163 572 aa15.51■□□□□ 0.07
PTPRF-215ENST00000496447 DCTN1Q14203 1278 aa15.51■□□□□ 0.07
PTPRF-215ENST00000496447 PDRG1Q9NUG6 133 aa15.51■□□□□ 0.07
PTPRF-215ENST00000496447 NUTM1Q86Y26 1132 aa15.51■□□□□ 0.07
PTPRF-215ENST00000496447 GRIN2AQ12879 1464 aa15.5■□□□□ 0.07
PTPRF-215ENST00000496447 KRT32Q14532 448 aa15.5■□□□□ 0.07
PTPRF-215ENST00000496447 JAKMIP1Q96N16 626 aaKnown RBP15.5■□□□□ 0.07
PTPRF-215ENST00000496447 USP5P45974 858 aa15.5■□□□□ 0.07
PTPRF-215ENST00000496447 IMMTQ16891 758 aaKnown RBP15.5■□□□□ 0.07
PTPRF-215ENST00000496447 HSP90AB3PQ58FF7 597 aa15.5■□□□□ 0.07
PTPRF-215ENST00000496447 KRT28Q7Z3Y7 464 aa15.5■□□□□ 0.07
PTPRF-215ENST00000496447 IDI1Q13907 227 aa15.5■□□□□ 0.07
PTPRF-215ENST00000496447 ACBD3Q9H3P7 528 aa15.5■□□□□ 0.07
PTPRF-215ENST00000496447 DENND4BO75064 1496 aaPredicted RBP15.5■□□□□ 0.07
PTPRF-215ENST00000496447 ZNF287Q9HBT7 754 aa15.5■□□□□ 0.07
PTPRF-215ENST00000496447 LARP1BQ659C4 914 aaKnown RBP15.5■□□□□ 0.07
PTPRF-215ENST00000496447 CRACR2BQ8N4Y2 399 aaPredicted RBP15.49■□□□□ 0.07
PTPRF-215ENST00000496447 PIBF1Q8WXW3 757 aa15.49■□□□□ 0.07
PTPRF-215ENST00000496447 TSPY26PQ9H489 355 aa15.49■□□□□ 0.07
PTPRF-215ENST00000496447 SSBP05455 408 aaKnown RBP eCLIP15.49■□□□□ 0.07
PTPRF-215ENST00000496447 TRMT112Q9UI30 125 aaKnown RBP15.49■□□□□ 0.07
PTPRF-215ENST00000496447 POLR3DP05423 398 aaPredicted RBP15.49■□□□□ 0.07
PTPRF-215ENST00000496447 RPGRQ92834 1020 aaKnown RBP15.49■□□□□ 0.07
PTPRF-215ENST00000496447 BACH2Q9BYV9 841 aa15.49■□□□□ 0.07
PTPRF-215ENST00000496447 EMILIN1Q9Y6C2 1016 aa15.49■□□□□ 0.07
PTPRF-215ENST00000496447 TMEM57Q8N5G2 664 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 DACH1Q9UI36 760 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 EXOC6BQ9Y2D4 811 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 FAM135AQ9P2D6 1515 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.48■□□□□ 0.07
PTPRF-215ENST00000496447 WDR33Q9C0J8 1336 aaKnown RBP15.48■□□□□ 0.07
PTPRF-215ENST00000496447 KIF1BPQ96EK5 621 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms