RNA–Protein interactions for RNA: ENST00000496144.5

VPS13B-206, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 5,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-206ENST00000496144 ANKRD26Q9UPS8 1709 aa11.13□□□□□ -0.63
VPS13B-206ENST00000496144 PPP4R2Q9NY27 417 aa11.13□□□□□ -0.63
VPS13B-206ENST00000496144 TEFQ10587 303 aa11.13□□□□□ -0.63
VPS13B-206ENST00000496144 SLC16A10Q8TF71 515 aa11.12□□□□□ -0.63
VPS13B-206ENST00000496144 USP19O94966 1318 aa11.12□□□□□ -0.63
VPS13B-206ENST00000496144 GTF2E1P29083 439 aaPredicted RBP11.12□□□□□ -0.63
VPS13B-206ENST00000496144 PPP2R1AP30153 589 aa11.12□□□□□ -0.63
VPS13B-206ENST00000496144 CPSF1Q10570 1443 aaKnown RBP11.12□□□□□ -0.63
VPS13B-206ENST00000496144 ZPR1O75312 459 aa11.12□□□□□ -0.63
VPS13B-206ENST00000496144 PARP3Q9Y6F1 533 aa11.12□□□□□ -0.63
VPS13B-206ENST00000496144 XIRP1Q702N8 1843 aaKnown RBP11.12□□□□□ -0.63
VPS13B-206ENST00000496144 ANKRD36BQ8N2N9 1353 aa11.11□□□□□ -0.63
VPS13B-206ENST00000496144 RTL1A6NKG5 1358 aa11.11□□□□□ -0.63
VPS13B-206ENST00000496144 RFC4P35249 363 aa11.11□□□□□ -0.63
VPS13B-206ENST00000496144 TXNRD1Q16881 649 aa11.11□□□□□ -0.63
VPS13B-206ENST00000496144 RRS1Q15050 365 aaKnown RBP11.11□□□□□ -0.63
VPS13B-206ENST00000496144 ZNF530Q6P9A1 599 aaPredicted RBP11.1□□□□□ -0.63
VPS13B-206ENST00000496144 A0A087WZG4 1122 aa11.1□□□□□ -0.63
VPS13B-206ENST00000496144 FLT4P35916 1363 aa11.1□□□□□ -0.63
VPS13B-206ENST00000496144 WDR43Q15061 677 aaKnown RBP eCLIP11.1□□□□□ -0.633e-6■■■■□ 20.8
VPS13B-206ENST00000496144 BCL9LQ86UU0 1499 aa11.1□□□□□ -0.63
VPS13B-206ENST00000496144 PHF14O94880 888 aa11.1□□□□□ -0.63
VPS13B-206ENST00000496144 HOXC9P31274 260 aa11.1□□□□□ -0.63
VPS13B-206ENST00000496144 MTHFSP49914 203 aa11.1□□□□□ -0.63
VPS13B-206ENST00000496144 MTFR1LQ9H019 292 aa11.1□□□□□ -0.63
VPS13B-206ENST00000496144 CCDC87Q9NVE4 849 aa11.1□□□□□ -0.63
VPS13B-206ENST00000496144 CHMP4AQ9BY43 222 aa11.1□□□□□ -0.63
VPS13B-206ENST00000496144 ZBTB7AO95365 584 aa11.09□□□□□ -0.63
VPS13B-206ENST00000496144 RTCBQ9Y3I0 505 aaKnown RBP11.09□□□□□ -0.63
VPS13B-206ENST00000496144 KIF20BQ96Q89 1820 aa11.08□□□□□ -0.64
VPS13B-206ENST00000496144 COL22A1Q8NFW1 1626 aaPredicted RBP11.08□□□□□ -0.64
VPS13B-206ENST00000496144 ATP6V1AP38606 617 aa11.08□□□□□ -0.64
VPS13B-206ENST00000496144 PLSCR1O15162 318 aa11.08□□□□□ -0.64
VPS13B-206ENST00000496144 SLC15A2Q16348 729 aa11.07□□□□□ -0.64
VPS13B-206ENST00000496144 NSD2O96028 1365 aa11.07□□□□□ -0.64
VPS13B-206ENST00000496144 DIAPH1O60610 1272 aaKnown RBP11.07□□□□□ -0.64
VPS13B-206ENST00000496144 PRIM1P49642 420 aaKnown RBP11.07□□□□□ -0.64
VPS13B-206ENST00000496144 GAS2L2Q8NHY3 880 aa11.07□□□□□ -0.64
VPS13B-206ENST00000496144 ONECUT3O60422 494 aaPredicted RBP11.07□□□□□ -0.64
VPS13B-206ENST00000496144 TRAPPC3LQ5T215 181 aa11.06□□□□□ -0.64
VPS13B-206ENST00000496144 USHBP1Q8N6Y0 703 aa11.06□□□□□ -0.64
VPS13B-206ENST00000496144 STARD3NLO95772 234 aa11.06□□□□□ -0.64
VPS13B-206ENST00000496144 CARD14Q9BXL6 1004 aa11.06□□□□□ -0.64
VPS13B-206ENST00000496144 A0A1W2PP64 1363 aa11.05□□□□□ -0.64
VPS13B-206ENST00000496144 TEX13AQ9BXU3 409 aaPredicted RBP11.05□□□□□ -0.64
VPS13B-206ENST00000496144 ERBB3P21860 1342 aa11.04□□□□□ -0.64
VPS13B-206ENST00000496144 KIF24Q5T7B8 1368 aa11.04□□□□□ -0.64
VPS13B-206ENST00000496144 SENP3-EIF4A1A0A087X0R7 540 aa11.04□□□□□ -0.64
VPS13B-206ENST00000496144 LMOD3Q0VAK6 560 aa11.04□□□□□ -0.64
VPS13B-206ENST00000496144 ADAMTS8Q9UP79 889 aa11.04□□□□□ -0.64
VPS13B-206ENST00000496144 NWD2Q9ULI1 1742 aa11.04□□□□□ -0.64
VPS13B-206ENST00000496144 RRP1P56182 461 aaKnown RBP11.03□□□□□ -0.64
VPS13B-206ENST00000496144 ZNF652Q9Y2D9 606 aa11.03□□□□□ -0.64
VPS13B-206ENST00000496144 USP31Q70CQ4 1352 aa11.03□□□□□ -0.64
VPS13B-206ENST00000496144 GNPATO15228 680 aa11.03□□□□□ -0.64
VPS13B-206ENST00000496144 G3V3G9 751 aa11.03□□□□□ -0.64
VPS13B-206ENST00000496144 DCAF8Q5TAQ9 597 aa11.03□□□□□ -0.64
VPS13B-206ENST00000496144 MAP3K19Q56UN5 1328 aa11.02□□□□□ -0.64
VPS13B-206ENST00000496144 CAMKK2Q96RR4 588 aa11.02□□□□□ -0.65
VPS13B-206ENST00000496144 COL5A2P05997 1499 aaPredicted RBP11.02□□□□□ -0.65
VPS13B-206ENST00000496144 RCAN3Q9UKA8 241 aa11.01□□□□□ -0.65
VPS13B-206ENST00000496144 ZNF521Q96K83 1311 aa11.01□□□□□ -0.65
VPS13B-206ENST00000496144 U2AF1L5P0DN76 240 aaPredicted RBP11.01□□□□□ -0.65
VPS13B-206ENST00000496144 U2AF1Q01081 240 aaKnown RBP eCLIP11.01□□□□□ -0.656e-6■■■■□ 22.1
VPS13B-206ENST00000496144 NLGN1Q8N2Q7 840 aa11.01□□□□□ -0.65
VPS13B-206ENST00000496144 DCAF5Q96JK2 942 aa11.01□□□□□ -0.65
VPS13B-206ENST00000496144 GIGYF1O75420 1035 aaPredicted RBP11□□□□□ -0.65
VPS13B-206ENST00000496144 RGPD1P0DJD0 1748 aa11□□□□□ -0.65
VPS13B-206ENST00000496144 B4GALNT3Q6L9W6 998 aa11□□□□□ -0.65
VPS13B-206ENST00000496144 MARCH10Q8NA82 808 aaPredicted RBP11□□□□□ -0.65
VPS13B-206ENST00000496144 CD163L1Q9NR16 1453 aa11□□□□□ -0.65
VPS13B-206ENST00000496144 TNS2Q63HR2 1409 aa11□□□□□ -0.65
VPS13B-206ENST00000496144 ST5P78524 1137 aa11□□□□□ -0.65
VPS13B-206ENST00000496144 CALD1Q05682 793 aaKnown RBP10.99□□□□□ -0.65
VPS13B-206ENST00000496144 KIF6Q6ZMV9 814 aa10.99□□□□□ -0.65
VPS13B-206ENST00000496144 CDCA7LQ96GN5 454 aa10.99□□□□□ -0.65
VPS13B-206ENST00000496144 RBM19Q9Y4C8 960 aaKnown RBP10.99□□□□□ -0.65
VPS13B-206ENST00000496144 PLCH1Q4KWH8 1693 aa10.99□□□□□ -0.65
VPS13B-206ENST00000496144 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.99□□□□□ -0.65
VPS13B-206ENST00000496144 SULT6B1Q6IMI4 303 aa10.98□□□□□ -0.65
VPS13B-206ENST00000496144 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.98□□□□□ -0.652e-7■■■■■ 27.4
VPS13B-206ENST00000496144 MSL1Q68DK7 614 aa10.98□□□□□ -0.65
VPS13B-206ENST00000496144 FYB1O15117 783 aa10.98□□□□□ -0.65
VPS13B-206ENST00000496144 ERVV-2B6SEH9 535 aa10.98□□□□□ -0.65
VPS13B-206ENST00000496144 SALL2Q9Y467 1007 aaPredicted RBP10.98□□□□□ -0.65
VPS13B-206ENST00000496144 HSP90B1P14625 803 aaKnown RBP10.98□□□□□ -0.65
VPS13B-206ENST00000496144 EMILIN1Q9Y6C2 1016 aa10.98□□□□□ -0.65
VPS13B-206ENST00000496144 GPBP1L1Q9HC44 474 aaPredicted RBP10.97□□□□□ -0.65
VPS13B-206ENST00000496144 FCHSD2O94868 740 aa10.97□□□□□ -0.65
VPS13B-206ENST00000496144 AKAP12Q02952 1782 aa10.97□□□□□ -0.65
VPS13B-206ENST00000496144 ARHGAP27Q6ZUM4 889 aa10.96□□□□□ -0.65
VPS13B-206ENST00000496144 MON2Q7Z3U7 1717 aa10.96□□□□□ -0.65
VPS13B-206ENST00000496144 COL3A1P02461 1466 aaPredicted RBP10.96□□□□□ -0.65
VPS13B-206ENST00000496144 PALLDQ8WX93 1383 aa10.96□□□□□ -0.66
VPS13B-206ENST00000496144 BCS1LQ9Y276 419 aa10.96□□□□□ -0.66
VPS13B-206ENST00000496144 MARF1Q9Y4F3 1742 aaKnown RBP10.96□□□□□ -0.66
VPS13B-206ENST00000496144 HSP90AB2PQ58FF8 381 aa10.95□□□□□ -0.66
VPS13B-206ENST00000496144 TOPAZ1Q8N9V7 1692 aa10.95□□□□□ -0.66
VPS13B-206ENST00000496144 PTCD1O75127 700 aaKnown RBP10.95□□□□□ -0.66
VPS13B-206ENST00000496144 SSFA2P28290 1259 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms