RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 ADD1P35611 737 aaKnown RBP11.13□□□□□ -0.63
CCDC39-207ENST00000495817 USP4Q13107 963 aa11.13□□□□□ -0.63
CCDC39-207ENST00000495817 ATP5J2-PTCD1G3V325 749 aa11.12□□□□□ -0.63
CCDC39-207ENST00000495817 SCTRP47872 440 aa11.12□□□□□ -0.63
CCDC39-207ENST00000495817 C6orf118Q5T5N4 469 aa11.12□□□□□ -0.63
CCDC39-207ENST00000495817 PIK3CDO00329 1044 aa11.11□□□□□ -0.63
CCDC39-207ENST00000495817 PTGIRP43119 386 aa11.11□□□□□ -0.63
CCDC39-207ENST00000495817 CALR3Q96L12 384 aaKnown RBP11.11□□□□□ -0.63
CCDC39-207ENST00000495817 CDCA7Q9BWT1 371 aaPredicted RBP11.11□□□□□ -0.63
CCDC39-207ENST00000495817 ARID3CA6NKF2 412 aa11.1□□□□□ -0.63
CCDC39-207ENST00000495817 POTECB2RU33 542 aa11.1□□□□□ -0.63
CCDC39-207ENST00000495817 SKIP12755 728 aa11.1□□□□□ -0.63
CCDC39-207ENST00000495817 RELBQ01201 579 aa11.1□□□□□ -0.63
CCDC39-207ENST00000495817 OXLD1Q5BKU9 147 aa11.1□□□□□ -0.63
CCDC39-207ENST00000495817 AGBL1Q96MI9 1066 aa11.1□□□□□ -0.63
CCDC39-207ENST00000495817 UCN2Q96RP3 112 aa11.1□□□□□ -0.63
CCDC39-207ENST00000495817 OSBPL3Q9H4L5 887 aa11.1□□□□□ -0.63
CCDC39-207ENST00000495817 USP17L5A8MUK1 530 aa11.08□□□□□ -0.64
CCDC39-207ENST00000495817 GNRH1P01148 92 aa11.08□□□□□ -0.64
CCDC39-207ENST00000495817 EML3Q32P44 896 aa11.08□□□□□ -0.64
CCDC39-207ENST00000495817 PLEKHM2Q8IWE5 1019 aa11.08□□□□□ -0.64
CCDC39-207ENST00000495817 KDF1Q8NAX2 398 aaPredicted RBP11.08□□□□□ -0.64
CCDC39-207ENST00000495817 SOS2Q07890 1332 aaPredicted RBP11.08□□□□□ -0.64
CCDC39-207ENST00000495817 ATP9BO43861 1147 aa11.07□□□□□ -0.64
CCDC39-207ENST00000495817 SNRPBP14678 240 aaKnown RBP11.07□□□□□ -0.64
CCDC39-207ENST00000495817 TSGA10IPQ3SY00 556 aa11.07□□□□□ -0.64
CCDC39-207ENST00000495817 TTLL8A6PVC2 850 aa11.06□□□□□ -0.64
CCDC39-207ENST00000495817 GPC1P35052 558 aa11.05□□□□□ -0.64
CCDC39-207ENST00000495817 CLN3Q13286 438 aa11.05□□□□□ -0.64
CCDC39-207ENST00000495817 INSM2Q96T92 566 aaPredicted RBP11.05□□□□□ -0.64
CCDC39-207ENST00000495817 MAN1A2O60476 641 aa11.04□□□□□ -0.64
CCDC39-207ENST00000495817 NCOA4Q13772 614 aa11.04□□□□□ -0.64
CCDC39-207ENST00000495817 TBC1D9Q6ZT07 1266 aa11.04□□□□□ -0.64
CCDC39-207ENST00000495817 ZNF395Q9H8N7 513 aaPredicted RBP11.04□□□□□ -0.64
CCDC39-207ENST00000495817 POLMQ9NP87 494 aaPredicted RBP11.04□□□□□ -0.64
CCDC39-207ENST00000495817 NOD1Q9Y239 953 aa11.04□□□□□ -0.64
CCDC39-207ENST00000495817 A0A1W2PRU2 124 aa11.03□□□□□ -0.64
CCDC39-207ENST00000495817 USP17L3A6NCW0 530 aa11.03□□□□□ -0.64
CCDC39-207ENST00000495817 USP17L4A6NCW7 530 aa11.03□□□□□ -0.64
CCDC39-207ENST00000495817 ESCO1Q5FWF5 840 aa11.03□□□□□ -0.64
CCDC39-207ENST00000495817 USP17L2Q6R6M4 530 aa11.03□□□□□ -0.64
CCDC39-207ENST00000495817 USP17L1Q7RTZ2 530 aa11.03□□□□□ -0.64
CCDC39-207ENST00000495817 ZNF777Q9ULD5 760 aaPredicted RBP11.03□□□□□ -0.64
CCDC39-207ENST00000495817 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.02□□□□□ -0.65
CCDC39-207ENST00000495817 TRIM50Q86XT4 487 aa11.02□□□□□ -0.65
CCDC39-207ENST00000495817 ARID3AQ99856 593 aa11.02□□□□□ -0.65
CCDC39-207ENST00000495817 ARHGEF10LQ9HCE6 1279 aa11.02□□□□□ -0.65
CCDC39-207ENST00000495817 CTSOP43234 321 aaPredicted RBP11.01□□□□□ -0.65
CCDC39-207ENST00000495817 RNF144AP50876 292 aaPredicted RBP11.01□□□□□ -0.65
CCDC39-207ENST00000495817 RNF217Q8TC41 542 aa11.01□□□□□ -0.65
CCDC39-207ENST00000495817 NLRP3Q96P20 1036 aa11.01□□□□□ -0.65
CCDC39-207ENST00000495817 PPP1R12CQ9BZL4 782 aa11.01□□□□□ -0.65
CCDC39-207ENST00000495817 DNMT3LQ9UJW3 386 aa11.01□□□□□ -0.65
CCDC39-207ENST00000495817 MAFBQ9Y5Q3 323 aaPredicted RBP11.01□□□□□ -0.65
CCDC39-207ENST00000495817 PALM3A6NDB9 673 aaPredicted RBP11□□□□□ -0.65
CCDC39-207ENST00000495817 WASLO00401 505 aaPredicted RBP11□□□□□ -0.65
CCDC39-207ENST00000495817 CCDC82Q8N4S0 544 aa11□□□□□ -0.65
CCDC39-207ENST00000495817 MEN1O00255 615 aa10.99□□□□□ -0.65
CCDC39-207ENST00000495817 FOXD4L5Q5VV16 416 aaPredicted RBP10.99□□□□□ -0.65
CCDC39-207ENST00000495817 ESYT1Q9BSJ8 1104 aa10.99□□□□□ -0.65
CCDC39-207ENST00000495817 TFIP11Q9UBB9 837 aaKnown RBP10.99□□□□□ -0.65
CCDC39-207ENST00000495817 ATP1A2P50993 1020 aa10.98□□□□□ -0.65
CCDC39-207ENST00000495817 GTF2IP78347 998 aa10.98□□□□□ -0.65
CCDC39-207ENST00000495817 DEPDC4Q8N2C3 294 aa10.98□□□□□ -0.65
CCDC39-207ENST00000495817 NPAS3Q8IXF0 933 aa10.97□□□□□ -0.65
CCDC39-207ENST00000495817 CNKSR1Q969H4 720 aa10.97□□□□□ -0.65
CCDC39-207ENST00000495817 RAB6BQ9NRW1 208 aa10.97□□□□□ -0.65
CCDC39-207ENST00000495817 SERPINA10Q9UK55 444 aa10.97□□□□□ -0.65
CCDC39-207ENST00000495817 IL2RAP01589 272 aa10.96□□□□□ -0.65
CCDC39-207ENST00000495817 SCNN1DP51172 638 aa10.96□□□□□ -0.65
CCDC39-207ENST00000495817 LYSMD3Q7Z3D4 306 aa10.96□□□□□ -0.65
CCDC39-207ENST00000495817 XAGE2Q96GT9 111 aa10.96□□□□□ -0.65
CCDC39-207ENST00000495817 ETNK1Q9HBU6 452 aa10.96□□□□□ -0.65
CCDC39-207ENST00000495817 PCDHGA11Q9Y5H2 935 aa10.96□□□□□ -0.65
CCDC39-207ENST00000495817 INHAP05111 366 aa10.95□□□□□ -0.66
CCDC39-207ENST00000495817 GDF10P55107 478 aa10.95□□□□□ -0.66
CCDC39-207ENST00000495817 HRH3Q9Y5N1 445 aa10.95□□□□□ -0.66
CCDC39-207ENST00000495817 SOBPA7XYQ1 873 aa10.94□□□□□ -0.66
CCDC39-207ENST00000495817 PSME1Q06323 249 aa10.94□□□□□ -0.66
CCDC39-207ENST00000495817 SLC27A3Q5K4L6 730 aa10.94□□□□□ -0.66
CCDC39-207ENST00000495817 CCDC97Q96F63 343 aaPredicted RBP10.94□□□□□ -0.66
CCDC39-207ENST00000495817 NXF1Q9UBU9 619 aaKnown RBP10.94□□□□□ -0.66
CCDC39-207ENST00000495817 MKRN1Q9UHC7 482 aaKnown RBP10.94□□□□□ -0.66
CCDC39-207ENST00000495817 FIGNL2A6NMB9 653 aa10.93□□□□□ -0.66
CCDC39-207ENST00000495817 GRIP2Q9C0E4 1043 aa10.93□□□□□ -0.66
CCDC39-207ENST00000495817 WDR44Q5JSH3 913 aa10.92□□□□□ -0.66
CCDC39-207ENST00000495817 CFAP70Q5T0N1 1121 aa10.92□□□□□ -0.66
CCDC39-207ENST00000495817 LARGE2Q8N3Y3 721 aa10.92□□□□□ -0.66
CCDC39-207ENST00000495817 SPATA31C2B4DYI2 1134 aa10.91□□□□□ -0.66
CCDC39-207ENST00000495817 BACH1O14867 736 aa10.91□□□□□ -0.66
CCDC39-207ENST00000495817 GTF2E1P29083 439 aaPredicted RBP10.91□□□□□ -0.66
CCDC39-207ENST00000495817 LMOD1P29536 600 aaPredicted RBP10.91□□□□□ -0.66
CCDC39-207ENST00000495817 CENPCQ03188 943 aa10.91□□□□□ -0.66
CCDC39-207ENST00000495817 SIX5Q8N196 739 aa10.91□□□□□ -0.66
CCDC39-207ENST00000495817 OGFOD1Q8N543 542 aa10.91□□□□□ -0.66
CCDC39-207ENST00000495817 FHDC1Q9C0D6 1143 aaPredicted RBP10.91□□□□□ -0.66
CCDC39-207ENST00000495817 DNAAF2Q9NVR5 837 aaKnown RBP10.91□□□□□ -0.66
CCDC39-207ENST00000495817 TMEM229AB2RXF0 380 aa10.9□□□□□ -0.66
CCDC39-207ENST00000495817 CLDN10P78369 228 aa10.9□□□□□ -0.66
CCDC39-207ENST00000495817 PTSQ03393 145 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms