RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 USHBP1Q8N6Y0 703 aa16.27■□□□□ 0.2
VTI1A-208ENST00000494728 NSD2O96028 1365 aa16.26■□□□□ 0.19
VTI1A-208ENST00000494728 NBPF6Q5VWK0 638 aa16.26■□□□□ 0.19
VTI1A-208ENST00000494728 NBPF4Q96M43 638 aa16.26■□□□□ 0.19
VTI1A-208ENST00000494728 ITGB4P16144 1822 aa16.26■□□□□ 0.19
VTI1A-208ENST00000494728 HSP90AB2PQ58FF8 381 aa16.25■□□□□ 0.19
VTI1A-208ENST00000494728 CDCA8Q53HL2 280 aa16.24■□□□□ 0.19
VTI1A-208ENST00000494728 EMILIN1Q9Y6C2 1016 aa16.24■□□□□ 0.19
VTI1A-208ENST00000494728 INSRP06213 1382 aa16.24■□□□□ 0.19
VTI1A-208ENST00000494728 FLT4P35916 1363 aa16.24■□□□□ 0.19
VTI1A-208ENST00000494728 DDX54Q8TDD1 881 aaKnown RBP16.23■□□□□ 0.19
VTI1A-208ENST00000494728 COL24A1Q17RW2 1714 aa16.22■□□□□ 0.19
VTI1A-208ENST00000494728 NCAPD2Q15021 1401 aa16.22■□□□□ 0.19
VTI1A-208ENST00000494728 SMG6Q86US8 1419 aaKnown RBP16.22■□□□□ 0.19
VTI1A-208ENST00000494728 LRRC4BQ9NT99 713 aa16.22■□□□□ 0.19
VTI1A-208ENST00000494728 TAF1LQ8IZX4 1826 aa16.22■□□□□ 0.19
VTI1A-208ENST00000494728 ZBTB7AO95365 584 aa16.21■□□□□ 0.19
VTI1A-208ENST00000494728 SLC15A2Q16348 729 aa16.21■□□□□ 0.19
VTI1A-208ENST00000494728 ZNF827Q17R98 1081 aa16.21■□□□□ 0.19
VTI1A-208ENST00000494728 SPON1Q9HCB6 807 aa16.21■□□□□ 0.19
VTI1A-208ENST00000494728 KIF24Q5T7B8 1368 aa16.21■□□□□ 0.19
VTI1A-208ENST00000494728 C5P01031 1676 aa16.21■□□□□ 0.18
VTI1A-208ENST00000494728 HSPA5P11021 654 aaKnown RBP16.2■□□□□ 0.18
VTI1A-208ENST00000494728 ZCRB1Q8TBF4 217 aaKnown RBP16.19■□□□□ 0.18
VTI1A-208ENST00000494728 CCER1Q8TC90 406 aaPredicted RBP16.19■□□□□ 0.18
VTI1A-208ENST00000494728 STK32BQ9NY57 414 aa16.19■□□□□ 0.18
VTI1A-208ENST00000494728 PTGER2P43116 358 aa16.18■□□□□ 0.18
VTI1A-208ENST00000494728 KCNQ4P56696 695 aa16.18■□□□□ 0.18
VTI1A-208ENST00000494728 POLR3GLQ9BT43 218 aa16.18■□□□□ 0.18
VTI1A-208ENST00000494728 PRIM1P49642 420 aaKnown RBP16.17■□□□□ 0.18
VTI1A-208ENST00000494728 SYTL4Q96C24 671 aaPredicted RBP16.16■□□□□ 0.18
VTI1A-208ENST00000494728 ATF5Q9Y2D1 282 aaPredicted RBP16.16■□□□□ 0.18
VTI1A-208ENST00000494728 CGNL1Q0VF96 1302 aa16.16■□□□□ 0.18
VTI1A-208ENST00000494728 EIF4G2P78344 907 aaKnown RBP eCLIP16.15■□□□□ 0.18
VTI1A-208ENST00000494728 SGIP1Q9BQI5 828 aa16.15■□□□□ 0.18
VTI1A-208ENST00000494728 RAPGEF4Q8WZA2 1011 aa16.14■□□□□ 0.17
VTI1A-208ENST00000494728 AKT1S1Q96B36 256 aa16.14■□□□□ 0.17
VTI1A-208ENST00000494728 PPP1R1BQ9UD71 204 aaPredicted RBP16.14■□□□□ 0.17
VTI1A-208ENST00000494728 PPM1GO15355 546 aaPredicted RBP16.13■□□□□ 0.17
VTI1A-208ENST00000494728 CYP27B1O15528 508 aa16.13■□□□□ 0.17
VTI1A-208ENST00000494728 POLKQ9UBT6 870 aa16.13■□□□□ 0.17
VTI1A-208ENST00000494728 PCDH11XQ9BZA7 1347 aa16.13■□□□□ 0.17
VTI1A-208ENST00000494728 PCDH11YQ9BZA8 1340 aa16.13■□□□□ 0.17
VTI1A-208ENST00000494728 TATP17735 454 aaPredicted RBP16.12■□□□□ 0.17
VTI1A-208ENST00000494728 WASHC2AQ641Q2 1341 aa16.12■□□□□ 0.17
VTI1A-208ENST00000494728 PNPLA7Q6ZV29 1317 aa16.12■□□□□ 0.17
VTI1A-208ENST00000494728 UBR3Q6ZT12 1888 aa16.12■□□□□ 0.17
VTI1A-208ENST00000494728 TNNT2P45379 298 aaPredicted RBP16.11■□□□□ 0.17
VTI1A-208ENST00000494728 MTFR1LQ9H019 292 aa16.11■□□□□ 0.17
VTI1A-208ENST00000494728 PANK3Q9H999 370 aa16.11■□□□□ 0.17
VTI1A-208ENST00000494728 C4BP0C0L5 1744 aa16.11■□□□□ 0.17
VTI1A-208ENST00000494728 SLC27A3Q5K4L6 730 aa16.1■□□□□ 0.17
VTI1A-208ENST00000494728 EYA1Q99502 592 aa16.1■□□□□ 0.17
VTI1A-208ENST00000494728 VIRMAQ69YN4 1812 aaKnown RBP16.08■□□□□ 0.17
VTI1A-208ENST00000494728 ADRA2BP18089 450 aa16.08■□□□□ 0.16
VTI1A-208ENST00000494728 EIF4A2Q14240 407 aaKnown RBP16.08■□□□□ 0.16
VTI1A-208ENST00000494728 FHDC1Q9C0D6 1143 aaPredicted RBP16.07■□□□□ 0.16
VTI1A-208ENST00000494728 CCNL1Q9UK58 526 aaPredicted RBP16.07■□□□□ 0.16
VTI1A-208ENST00000494728 PALLDQ8WX93 1383 aa16.07■□□□□ 0.16
VTI1A-208ENST00000494728 CHD4Q14839 1912 aa16.06■□□□□ 0.16
VTI1A-208ENST00000494728 KIF7Q2M1P5 1343 aa16.05■□□□□ 0.16
VTI1A-208ENST00000494728 IGSF1Q8N6C5 1336 aa16.05■□□□□ 0.16
VTI1A-208ENST00000494728 MPRIPQ6WCQ1 1025 aa16.05■□□□□ 0.16
VTI1A-208ENST00000494728 SYT17Q9BSW7 474 aa16.05■□□□□ 0.16
VTI1A-208ENST00000494728 COL5A3P25940 1745 aaPredicted RBP16.04■□□□□ 0.16
VTI1A-208ENST00000494728 AMIGO3Q86WK7 504 aa16.03■□□□□ 0.16
VTI1A-208ENST00000494728 TFCP2L1Q9NZI6 479 aa16.03■□□□□ 0.16
VTI1A-208ENST00000494728 MAP3K5Q99683 1374 aa16.02■□□□□ 0.16
VTI1A-208ENST00000494728 NKX1-1Q15270 411 aaPredicted RBP16.02■□□□□ 0.16
VTI1A-208ENST00000494728 PIGBQ92521 554 aa16.02■□□□□ 0.16
VTI1A-208ENST00000494728 ARXQ96QS3 562 aa16.02■□□□□ 0.16
VTI1A-208ENST00000494728 SCN11AQ9UI33 1791 aa16.01■□□□□ 0.15
VTI1A-208ENST00000494728 PHKG2P15735 406 aa16.01■□□□□ 0.15
VTI1A-208ENST00000494728 COL23A1Q86Y22 540 aaPredicted RBP16.01■□□□□ 0.15
VTI1A-208ENST00000494728 KDM6AO15550 1401 aaPredicted RBP16.01■□□□□ 0.15
VTI1A-208ENST00000494728 ZNF831Q5JPB2 1677 aa16■□□□□ 0.15
VTI1A-208ENST00000494728 AEBP1Q8IUX7 1158 aa16■□□□□ 0.15
VTI1A-208ENST00000494728 SPG7Q9UQ90 795 aa16■□□□□ 0.15
VTI1A-208ENST00000494728 YY1P25490 414 aa15.99■□□□□ 0.15
VTI1A-208ENST00000494728 AMER1Q5JTC6 1135 aaPredicted RBP15.99■□□□□ 0.15
VTI1A-208ENST00000494728 SMIM5Q71RC9 77 aa15.99■□□□□ 0.15
VTI1A-208ENST00000494728 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.99■□□□□ 0.153e-6■■□□□ 13.5
VTI1A-208ENST00000494728 PLEKHG2Q9H7P9 1386 aa15.99■□□□□ 0.15
VTI1A-208ENST00000494728 MYH14Q7Z406 1995 aaKnown RBP15.98■□□□□ 0.15
VTI1A-208ENST00000494728 C4AP0C0L4 1744 aa15.98■□□□□ 0.15
VTI1A-208ENST00000494728 TJP1Q07157 1748 aa15.98■□□□□ 0.15
VTI1A-208ENST00000494728 MORC1Q86VD1 984 aa15.98■□□□□ 0.15
VTI1A-208ENST00000494728 SLC16A10Q8TF71 515 aa15.98■□□□□ 0.15
VTI1A-208ENST00000494728 KDRP35968 1356 aa15.98■□□□□ 0.15
VTI1A-208ENST00000494728 MSL1Q68DK7 614 aa15.97■□□□□ 0.15
VTI1A-208ENST00000494728 ASAP1Q9ULH1 1129 aa15.97■□□□□ 0.15
VTI1A-208ENST00000494728 ITPK1Q13572 414 aa15.96■□□□□ 0.15
VTI1A-208ENST00000494728 IFNL2Q8IZJ0 200 aa15.96■□□□□ 0.15
VTI1A-208ENST00000494728 LINC00116Q8NCU8 138 aa15.96■□□□□ 0.15
VTI1A-208ENST00000494728 NLGN2Q8NFZ4 835 aa15.96■□□□□ 0.15
VTI1A-208ENST00000494728 CICQ96RK0 1608 aaPredicted RBP15.95■□□□□ 0.14
VTI1A-208ENST00000494728 KLHL34Q8N239 644 aa15.95■□□□□ 0.14
VTI1A-208ENST00000494728 TMOD3Q9NYL9 352 aa15.95■□□□□ 0.14
VTI1A-208ENST00000494728 KNSTRNQ9Y448 316 aa15.95■□□□□ 0.14
VTI1A-208ENST00000494728 COL3A1P02461 1466 aaPredicted RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms