RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 MTFR1LQ9H019 292 aa17.75■□□□□ 0.43
SKA1-205ENST00000494518 MEGF6O75095 1541 aa17.75■□□□□ 0.43
SKA1-205ENST00000494518 USP47Q96K76 1375 aa17.75■□□□□ 0.43
SKA1-205ENST00000494518 HOXD11P31277 338 aaPredicted RBP17.74■□□□□ 0.43
SKA1-205ENST00000494518 KCNQ4P56696 695 aa17.74■□□□□ 0.43
SKA1-205ENST00000494518 FHDC1Q9C0D6 1143 aaPredicted RBP17.74■□□□□ 0.43
SKA1-205ENST00000494518 GGNBP2Q9H3C7 697 aa17.74■□□□□ 0.43
SKA1-205ENST00000494518 USHBP1Q8N6Y0 703 aa17.73■□□□□ 0.43
SKA1-205ENST00000494518 LY75O60449 1722 aa17.72■□□□□ 0.43
SKA1-205ENST00000494518 PRIM1P49642 420 aaKnown RBP17.72■□□□□ 0.43
SKA1-205ENST00000494518 QSER1Q2KHR3 1735 aa17.72■□□□□ 0.43
SKA1-205ENST00000494518 TMF1P82094 1093 aa17.71■□□□□ 0.43
SKA1-205ENST00000494518 SGIP1Q9BQI5 828 aa17.71■□□□□ 0.43
SKA1-205ENST00000494518 SYT17Q9BSW7 474 aa17.71■□□□□ 0.43
SKA1-205ENST00000494518 CHD4Q14839 1912 aa17.7■□□□□ 0.42
SKA1-205ENST00000494518 FYB1O15117 783 aa17.7■□□□□ 0.42
SKA1-205ENST00000494518 ZCRB1Q8TBF4 217 aaKnown RBP17.7■□□□□ 0.42
SKA1-205ENST00000494518 RTL1A6NKG5 1358 aa17.69■□□□□ 0.42
SKA1-205ENST00000494518 NBPF6Q5VWK0 638 aa17.69■□□□□ 0.42
SKA1-205ENST00000494518 NBPF4Q96M43 638 aa17.69■□□□□ 0.42
SKA1-205ENST00000494518 ARXQ96QS3 562 aa17.69■□□□□ 0.42
SKA1-205ENST00000494518 NSD2O96028 1365 aa17.68■□□□□ 0.42
SKA1-205ENST00000494518 TRIM26Q12899 539 aaPredicted RBP17.68■□□□□ 0.42
SKA1-205ENST00000494518 KLHL34Q8N239 644 aa17.68■□□□□ 0.42
SKA1-205ENST00000494518 AKT1S1Q96B36 256 aa17.68■□□□□ 0.42
SKA1-205ENST00000494518 SLC24A1O60721 1099 aa17.67■□□□□ 0.42
SKA1-205ENST00000494518 SMG6Q86US8 1419 aaKnown RBP17.66■□□□□ 0.42
SKA1-205ENST00000494518 HSP90AB2PQ58FF8 381 aa17.66■□□□□ 0.42
SKA1-205ENST00000494518 SLC27A3Q5K4L6 730 aa17.66■□□□□ 0.42
SKA1-205ENST00000494518 PNPLA7Q6ZV29 1317 aa17.66■□□□□ 0.42
SKA1-205ENST00000494518 TFCP2L1Q9NZI6 479 aa17.65■□□□□ 0.42
SKA1-205ENST00000494518 GOLGB1Q14789 3259 aaKnown RBP17.64■□□□□ 0.42
SKA1-205ENST00000494518 COL24A1Q17RW2 1714 aa17.64■□□□□ 0.41
SKA1-205ENST00000494518 ITGB4P16144 1822 aa17.64■□□□□ 0.41
SKA1-205ENST00000494518 RAPGEF4Q8WZA2 1011 aa17.64■□□□□ 0.41
SKA1-205ENST00000494518 NSD3Q9BZ95 1437 aa17.64■□□□□ 0.41
SKA1-205ENST00000494518 MAP2P11137 1827 aaKnown RBP17.63■□□□□ 0.41
SKA1-205ENST00000494518 KCNA4P22459 653 aa17.63■□□□□ 0.41
SKA1-205ENST00000494518 CCNL1Q9UK58 526 aaPredicted RBP17.63■□□□□ 0.41
SKA1-205ENST00000494518 C5P01031 1676 aa17.63■□□□□ 0.41
SKA1-205ENST00000494518 TOGARAM1Q9Y4F4 1720 aa17.63■□□□□ 0.41
SKA1-205ENST00000494518 TATP17735 454 aaPredicted RBP17.62■□□□□ 0.41
SKA1-205ENST00000494518 CARD14Q9BXL6 1004 aa17.62■□□□□ 0.41
SKA1-205ENST00000494518 EMILIN1Q9Y6C2 1016 aa17.62■□□□□ 0.41
SKA1-205ENST00000494518 TAF1LQ8IZX4 1826 aa17.62■□□□□ 0.41
SKA1-205ENST00000494518 FLT4P35916 1363 aa17.62■□□□□ 0.41
SKA1-205ENST00000494518 INSRP06213 1382 aa17.61■□□□□ 0.41
SKA1-205ENST00000494518 PPM1GO15355 546 aaPredicted RBP17.6■□□□□ 0.41
SKA1-205ENST00000494518 POLD1P28340 1107 aa17.6■□□□□ 0.41
SKA1-205ENST00000494518 CDCA8Q53HL2 280 aa17.6■□□□□ 0.41
SKA1-205ENST00000494518 POLR3GLQ9BT43 218 aa17.6■□□□□ 0.41
SKA1-205ENST00000494518 PKD1L3Q7Z443 1732 aa17.59■□□□□ 0.41
SKA1-205ENST00000494518 ANKRD26Q9UPS8 1709 aa17.59■□□□□ 0.41
SKA1-205ENST00000494518 MAP3K5Q99683 1374 aa17.59■□□□□ 0.41
SKA1-205ENST00000494518 NPM3O75607 178 aaKnown RBP17.59■□□□□ 0.41
SKA1-205ENST00000494518 PELP1Q8IZL8 1130 aaKnown RBP17.59■□□□□ 0.41
SKA1-205ENST00000494518 ZNF784Q8NCA9 323 aaPredicted RBP17.59■□□□□ 0.41
SKA1-205ENST00000494518 SLC16A10Q8TF71 515 aa17.59■□□□□ 0.41
SKA1-205ENST00000494518 CGNL1Q0VF96 1302 aa17.58■□□□□ 0.4
SKA1-205ENST00000494518 PCDH11XQ9BZA7 1347 aa17.58■□□□□ 0.4
SKA1-205ENST00000494518 PCDH11YQ9BZA8 1340 aa17.58■□□□□ 0.4
SKA1-205ENST00000494518 GPR162Q16538 588 aa17.58■□□□□ 0.4
SKA1-205ENST00000494518 MSL1Q68DK7 614 aa17.58■□□□□ 0.4
SKA1-205ENST00000494518 MPRIPQ6WCQ1 1025 aa17.57■□□□□ 0.4
SKA1-205ENST00000494518 NLGN2Q8NFZ4 835 aa17.57■□□□□ 0.4
SKA1-205ENST00000494518 CYP27B1O15528 508 aa17.56■□□□□ 0.4
SKA1-205ENST00000494518 COL23A1Q86Y22 540 aaPredicted RBP17.56■□□□□ 0.4
SKA1-205ENST00000494518 PCGF6Q9BYE7 350 aa17.56■□□□□ 0.4
SKA1-205ENST00000494518 PALLDQ8WX93 1383 aa17.55■□□□□ 0.4
SKA1-205ENST00000494518 RNF39Q9H2S5 420 aa17.55■□□□□ 0.4
SKA1-205ENST00000494518 KIF24Q5T7B8 1368 aa17.54■□□□□ 0.4
SKA1-205ENST00000494518 C4BP0C0L5 1744 aa17.53■□□□□ 0.4
SKA1-205ENST00000494518 TNNT2P45379 298 aaPredicted RBP17.52■□□□□ 0.4
SKA1-205ENST00000494518 SMIM5Q71RC9 77 aa17.52■□□□□ 0.4
SKA1-205ENST00000494518 UBR3Q6ZT12 1888 aa17.52■□□□□ 0.39
SKA1-205ENST00000494518 NCAPD2Q15021 1401 aa17.49■□□□□ 0.39
SKA1-205ENST00000494518 AMIGO3Q86WK7 504 aa17.49■□□□□ 0.39
SKA1-205ENST00000494518 EYA1Q99502 592 aa17.49■□□□□ 0.39
SKA1-205ENST00000494518 PHF14O94880 888 aa17.48■□□□□ 0.39
SKA1-205ENST00000494518 PIGBQ92521 554 aa17.48■□□□□ 0.39
SKA1-205ENST00000494518 POLKQ9UBT6 870 aa17.48■□□□□ 0.39
SKA1-205ENST00000494518 WASHC2AQ641Q2 1341 aa17.47■□□□□ 0.39
SKA1-205ENST00000494518 YBX3P16989 372 aaKnown RBP eCLIP17.47■□□□□ 0.39
SKA1-205ENST00000494518 AK7Q96M32 723 aa17.47■□□□□ 0.39
SKA1-205ENST00000494518 SPG7Q9UQ90 795 aa17.47■□□□□ 0.39
SKA1-205ENST00000494518 SMARCC1Q92922 1105 aaPredicted RBP17.46■□□□□ 0.39
SKA1-205ENST00000494518 EIF4A2Q14240 407 aaKnown RBP17.45■□□□□ 0.38
SKA1-205ENST00000494518 TIMELESSQ9UNS1 1208 aa17.45■□□□□ 0.38
SKA1-205ENST00000494518 NKX1-1Q15270 411 aaPredicted RBP17.44■□□□□ 0.38
SKA1-205ENST00000494518 TMOD3Q9NYL9 352 aa17.44■□□□□ 0.38
SKA1-205ENST00000494518 WWC3Q9ULE0 1092 aa17.44■□□□□ 0.38
SKA1-205ENST00000494518 HSPA5P11021 654 aaKnown RBP17.43■□□□□ 0.38
SKA1-205ENST00000494518 PHKG2P15735 406 aa17.43■□□□□ 0.38
SKA1-205ENST00000494518 LINC00116Q8NCU8 138 aa17.43■□□□□ 0.38
SKA1-205ENST00000494518 FLAD1Q8NFF5 587 aa17.43■□□□□ 0.38
SKA1-205ENST00000494518 ASAP1Q9ULH1 1129 aa17.43■□□□□ 0.38
SKA1-205ENST00000494518 LOC102724428A0A0B4J2F2 783 aa17.42■□□□□ 0.38
SKA1-205ENST00000494518 SIK1P57059 783 aa17.42■□□□□ 0.38
SKA1-205ENST00000494518 SENP3-EIF4A1A0A087X0R7 540 aa17.41■□□□□ 0.38
SKA1-205ENST00000494518 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms