RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-211ENST00000494333 PIK3C2BO00750 1634 aa12.17□□□□□ -0.46
RIF1-211ENST00000494333 CPS1P31327 1500 aa12.16□□□□□ -0.46
RIF1-211ENST00000494333 FUT2Q10981 343 aa12.16□□□□□ -0.46
RIF1-211ENST00000494333 NYAP1Q6ZVC0 841 aa12.16□□□□□ -0.46
RIF1-211ENST00000494333 SLC26A8Q96RN1 970 aa12.16□□□□□ -0.46
RIF1-211ENST00000494333 HCSTQ9UBK5 93 aa12.16□□□□□ -0.46
RIF1-211ENST00000494333 SYNMO15061 1565 aa12.16□□□□□ -0.46
RIF1-211ENST00000494333 IQGAP1P46940 1657 aa12.15□□□□□ -0.46
RIF1-211ENST00000494333 USP46P62068 366 aa12.14□□□□□ -0.47
RIF1-211ENST00000494333 DIXDC1Q155Q3 683 aa12.14□□□□□ -0.47
RIF1-211ENST00000494333 UNC13BO14795 1591 aa12.13□□□□□ -0.47
RIF1-211ENST00000494333 HOXA2O43364 376 aa12.13□□□□□ -0.47
RIF1-211ENST00000494333 PPP1R15AO75807 674 aaPredicted RBP12.13□□□□□ -0.47
RIF1-211ENST00000494333 ATP6V1AP38606 617 aa12.13□□□□□ -0.47
RIF1-211ENST00000494333 TRIM52Q96A61 297 aa12.13□□□□□ -0.47
RIF1-211ENST00000494333 RSPH6AQ9H0K4 717 aa12.13□□□□□ -0.47
RIF1-211ENST00000494333 TET3O43151 1660 aa12.13□□□□□ -0.47
RIF1-211ENST00000494333 PUS10Q3MIT2 529 aaKnown RBP12.12□□□□□ -0.47
RIF1-211ENST00000494333 NUTM2DQ5VT03 806 aaPredicted RBP12.12□□□□□ -0.47
RIF1-211ENST00000494333 MYSM1Q5VVJ2 828 aa12.12□□□□□ -0.47
RIF1-211ENST00000494333 NAIPQ13075 1403 aa12.11□□□□□ -0.47
RIF1-211ENST00000494333 MOXD2PA6NHM9 499 aa12.11□□□□□ -0.47
RIF1-211ENST00000494333 KCNA6P17658 529 aa12.11□□□□□ -0.47
RIF1-211ENST00000494333 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.11□□□□□ -0.47
RIF1-211ENST00000494333 HLA-CQ95604 372 aa12.11□□□□□ -0.47
RIF1-211ENST00000494333 PCDHB3Q9Y5E6 796 aa12.11□□□□□ -0.47
RIF1-211ENST00000494333 ADGRB3O60242 1522 aa12.11□□□□□ -0.47
RIF1-211ENST00000494333 LRRC7Q96NW7 1537 aa12.11□□□□□ -0.47
RIF1-211ENST00000494333 RIMS2Q9UQ26 1411 aa12.11□□□□□ -0.47
RIF1-211ENST00000494333 NDUFV2P19404 249 aa12.1□□□□□ -0.47
RIF1-211ENST00000494333 TMEM132AQ24JP5 1023 aa12.1□□□□□ -0.47
RIF1-211ENST00000494333 GRIPAP1Q4V328 841 aa12.1□□□□□ -0.47
RIF1-211ENST00000494333 SH3D19Q5HYK7 790 aa12.1□□□□□ -0.47
RIF1-211ENST00000494333 IQGAP3Q86VI3 1631 aa12.09□□□□□ -0.47
RIF1-211ENST00000494333 HSPA1LP34931 641 aa12.09□□□□□ -0.47
RIF1-211ENST00000494333 MORN1Q5T089 497 aa12.09□□□□□ -0.47
RIF1-211ENST00000494333 PROSER2Q86WR7 435 aaPredicted RBP12.09□□□□□ -0.47
RIF1-211ENST00000494333 POLR3EQ9NVU0 708 aa12.09□□□□□ -0.47
RIF1-211ENST00000494333 KDM5AP29375 1690 aaKnown RBP12.09□□□□□ -0.47
RIF1-211ENST00000494333 E9PCH4 1651 aa12.08□□□□□ -0.48
RIF1-211ENST00000494333 GCC2Q8IWJ2 1684 aa12.08□□□□□ -0.48
RIF1-211ENST00000494333 GUCA2AQ02747 115 aa12.08□□□□□ -0.48
RIF1-211ENST00000494333 BLOC1S3Q6QNY0 202 aa12.08□□□□□ -0.48
RIF1-211ENST00000494333 RIC3Q7Z5B4 369 aa12.08□□□□□ -0.48
RIF1-211ENST00000494333 ZFYVE9O95405 1425 aa12.08□□□□□ -0.48
RIF1-211ENST00000494333 DISP3Q9P2K9 1392 aa12.07□□□□□ -0.48
RIF1-211ENST00000494333 PLEKHG1Q9ULL1 1385 aa12.07□□□□□ -0.48
RIF1-211ENST00000494333 HFM1A2PYH4 1435 aa12.07□□□□□ -0.48
RIF1-211ENST00000494333 SKIV2LQ15477 1246 aaKnown RBP12.07□□□□□ -0.48
RIF1-211ENST00000494333 ZNF326Q5BKZ1 582 aaKnown RBP12.07□□□□□ -0.48
RIF1-211ENST00000494333 RSBN1LQ6PCB5 846 aaPredicted RBP12.07□□□□□ -0.48
RIF1-211ENST00000494333 LIMD1Q9UGP4 676 aa12.07□□□□□ -0.48
RIF1-211ENST00000494333 TBX22Q9Y458 520 aa12.07□□□□□ -0.48
RIF1-211ENST00000494333 STRCP1A6NGW2 1772 aa12.06□□□□□ -0.48
RIF1-211ENST00000494333 SPTLC1O15269 473 aa12.06□□□□□ -0.48
RIF1-211ENST00000494333 COPS2P61201 443 aa12.06□□□□□ -0.48
RIF1-211ENST00000494333 MTRQ99707 1265 aa12.06□□□□□ -0.48
RIF1-211ENST00000494333 GOPCQ9HD26 462 aa12.06□□□□□ -0.48
RIF1-211ENST00000494333 TMEM131LA2VDJ0 1609 aa12.06□□□□□ -0.48
RIF1-211ENST00000494333 TMEM94Q12767 1356 aa12.05□□□□□ -0.48
RIF1-211ENST00000494333 FDX1P10109 184 aa12.05□□□□□ -0.48
RIF1-211ENST00000494333 CLK2P49760 499 aaKnown RBP12.05□□□□□ -0.48
RIF1-211ENST00000494333 TJAP1Q5JTD0 557 aa12.05□□□□□ -0.48
RIF1-211ENST00000494333 SLC27A5Q9Y2P5 690 aa12.05□□□□□ -0.48
RIF1-211ENST00000494333 GJA5P36382 358 aa12.04□□□□□ -0.48
RIF1-211ENST00000494333 NR1I2O75469 434 aa12.03□□□□□ -0.48
RIF1-211ENST00000494333 SCUBE3Q8IX30 993 aa12.03□□□□□ -0.48
RIF1-211ENST00000494333 PROCA1Q8NCQ7 364 aaPredicted RBP12.03□□□□□ -0.48
RIF1-211ENST00000494333 PCDHGC3Q9UN70 934 aa12.03□□□□□ -0.48
RIF1-211ENST00000494333 PCDHB15Q9Y5E8 787 aa12.03□□□□□ -0.48
RIF1-211ENST00000494333 ALKQ9UM73 1620 aa12.01□□□□□ -0.49
RIF1-211ENST00000494333 PCMTD1Q96MG8 357 aaPredicted RBP12.01□□□□□ -0.49
RIF1-211ENST00000494333 ADAMTS13Q76LX8 1427 aa12.01□□□□□ -0.49
RIF1-211ENST00000494333 CSPP1Q1MSJ5 1256 aa12□□□□□ -0.49
RIF1-211ENST00000494333 TUSC1Q2TAM9 212 aa12□□□□□ -0.49
RIF1-211ENST00000494333 C14orf37Q86TY3 774 aa12□□□□□ -0.49
RIF1-211ENST00000494333 ZNF516Q92618 1163 aa12□□□□□ -0.49
RIF1-211ENST00000494333 IL21Q9HBE4 155 aa12□□□□□ -0.49
RIF1-211ENST00000494333 PLSCR2Q9NRY7 297 aa12□□□□□ -0.49
RIF1-211ENST00000494333 AMOTL2Q9Y2J4 779 aa12□□□□□ -0.49
RIF1-211ENST00000494333 MYO5BQ9ULV0 1848 aa12□□□□□ -0.49
RIF1-211ENST00000494333 ZPR1O75312 459 aa11.99□□□□□ -0.49
RIF1-211ENST00000494333 ILDR2Q71H61 639 aa11.99□□□□□ -0.49
RIF1-211ENST00000494333 MPHOSPH9Q99550 1183 aa11.99□□□□□ -0.49
RIF1-211ENST00000494333 MSH6P52701 1360 aa11.99□□□□□ -0.49
RIF1-211ENST00000494333 NKTRP30414 1462 aaKnown RBP11.98□□□□□ -0.49
RIF1-211ENST00000494333 PIK3R4Q99570 1358 aa11.98□□□□□ -0.49
RIF1-211ENST00000494333 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.98□□□□□ -0.49
RIF1-211ENST00000494333 SLAIN2Q9P270 581 aa11.98□□□□□ -0.49
RIF1-211ENST00000494333 FAM135BQ49AJ0 1406 aa11.97□□□□□ -0.49
RIF1-211ENST00000494333 ITGBL1O95965 494 aaPredicted RBP11.97□□□□□ -0.49
RIF1-211ENST00000494333 Q3C1V9 767 aa11.97□□□□□ -0.49
RIF1-211ENST00000494333 BRICD5Q6PL45 260 aa11.97□□□□□ -0.49
RIF1-211ENST00000494333 RNF19BQ6ZMZ0 732 aa11.97□□□□□ -0.49
RIF1-211ENST00000494333 SYMPKQ92797 1274 aaKnown RBP11.97□□□□□ -0.49
RIF1-211ENST00000494333 THAP11Q96EK4 314 aa11.97□□□□□ -0.49
RIF1-211ENST00000494333 SPHKAPQ2M3C7 1700 aa11.97□□□□□ -0.49
RIF1-211ENST00000494333 LILRB3O75022 631 aa11.96□□□□□ -0.49
RIF1-211ENST00000494333 QPCTQ16769 361 aa11.96□□□□□ -0.49
RIF1-211ENST00000494333 CABLES1Q8TDN4 633 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms