RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	FBXW7	Q969H0	707 aa		10.92	□□□□□ -0.66
RBM39-238	ENST00000493853	NRXN1	Q9ULB1	1477 aa		10.92	□□□□□ -0.66
RBM39-238	ENST00000493853	TK2	O00142	265 aa		10.91	□□□□□ -0.66
RBM39-238	ENST00000493853	SLC24A1	O60721	1099 aa		10.91	□□□□□ -0.66
RBM39-238	ENST00000493853	PXDN	Q92626	1479 aa		10.91	□□□□□ -0.66
RBM39-238	ENST00000493853	WASL	O00401	505 aa	Predicted RBP	10.9	□□□□□ -0.66
RBM39-238	ENST00000493853	UNC5CL	Q8IV45	518 aa		10.9	□□□□□ -0.66
RBM39-238	ENST00000493853	NGDN	Q8NEJ9	315 aa	Known RBP	10.9	□□□□□ -0.66
RBM39-238	ENST00000493853	CABLES1	Q8TDN4	633 aa		10.9	□□□□□ -0.66
RBM39-238	ENST00000493853	GJD4	Q96KN9	370 aa	Predicted RBP	10.9	□□□□□ -0.66
RBM39-238	ENST00000493853	EPAS1	Q99814	870 aa		10.9	□□□□□ -0.66
RBM39-238	ENST00000493853	CCDC9	Q9Y3X0	531 aa	Known RBP	10.9	□□□□□ -0.66
RBM39-238	ENST00000493853	ARIH1	Q9Y4X5	557 aa	Predicted RBP	10.9	□□□□□ -0.66
RBM39-238	ENST00000493853	RGS12	O14924	1447 aa		10.9	□□□□□ -0.66
RBM39-238	ENST00000493853	EIF3A	Q14152	1382 aa	Known RBP	10.9	□□□□□ -0.67
RBM39-238	ENST00000493853	GPRASP1	Q5JY77	1395 aa		10.9	□□□□□ -0.67
RBM39-238	ENST00000493853	LAMC1	P11047	1609 aa		10.89	□□□□□ -0.67
RBM39-238	ENST00000493853	ATAD2	Q6PL18	1390 aa		10.89	□□□□□ -0.67
RBM39-238	ENST00000493853	ARHGEF10	O15013	1369 aa		10.88	□□□□□ -0.67
RBM39-238	ENST00000493853	IFT172	Q9UG01	1749 aa		10.87	□□□□□ -0.67
RBM39-238	ENST00000493853	ATRN	O75882	1429 aa		10.87	□□□□□ -0.67
RBM39-238	ENST00000493853	TNS3	Q68CZ2	1445 aa		10.87	□□□□□ -0.67
RBM39-238	ENST00000493853	ANKAR	Q7Z5J8	1434 aa		10.87	□□□□□ -0.67
RBM39-238	ENST00000493853	SBNO1	A3KN83	1393 aa		10.87	□□□□□ -0.67
RBM39-238	ENST00000493853	DLC1	Q96QB1	1528 aa		10.86	□□□□□ -0.67
RBM39-238	ENST00000493853		A0A0G2JS52	829 aa		10.86	□□□□□ -0.67
RBM39-238	ENST00000493853	MYT1	Q01538	1121 aa		10.86	□□□□□ -0.67
RBM39-238	ENST00000493853	VPS9D1	Q9Y2B5	631 aa		10.86	□□□□□ -0.67
RBM39-238	ENST00000493853	KNDC1	Q76NI1	1749 aa		10.86	□□□□□ -0.67
RBM39-238	ENST00000493853	BCL9L	Q86UU0	1499 aa		10.86	□□□□□ -0.67
RBM39-238	ENST00000493853	NBR1	Q14596	966 aa		10.85	□□□□□ -0.67
RBM39-238	ENST00000493853	CCDC125	Q86Z20	511 aa		10.85	□□□□□ -0.67
RBM39-238	ENST00000493853	NUDT16	Q96DE0	195 aa	Known RBP	10.85	□□□□□ -0.67
RBM39-238	ENST00000493853	CDK19	Q9BWU1	502 aa		10.85	□□□□□ -0.67
RBM39-238	ENST00000493853	GRXCR2	A6NFK2	248 aa		10.84	□□□□□ -0.67
RBM39-238	ENST00000493853	HR	O43593	1189 aa		10.84	□□□□□ -0.67
RBM39-238	ENST00000493853	VPS72	Q15906	364 aa		10.84	□□□□□ -0.67
RBM39-238	ENST00000493853	SLC4A5	Q9BY07	1137 aa		10.84	□□□□□ -0.67
RBM39-238	ENST00000493853	FMN2	Q9NZ56	1722 aa		10.84	□□□□□ -0.67
RBM39-238	ENST00000493853	COL22A1	Q8NFW1	1626 aa	Predicted RBP	10.84	□□□□□ -0.67
RBM39-238	ENST00000493853	PRR36	Q9H6K5	1346 aa		10.84	□□□□□ -0.67
RBM39-238	ENST00000493853	KIF1A	Q12756	1690 aa		10.83	□□□□□ -0.68
RBM39-238	ENST00000493853	FAM83G	A6ND36	823 aa		10.83	□□□□□ -0.68
RBM39-238	ENST00000493853	PPP1R3G	B7ZBB8	358 aa		10.83	□□□□□ -0.68
RBM39-238	ENST00000493853	SF3B2	Q13435	895 aa	Known RBP	10.83	□□□□□ -0.68
RBM39-238	ENST00000493853	SEPT12	Q8IYM1	358 aa		10.83	□□□□□ -0.68
RBM39-238	ENST00000493853	ZBED2	Q9BTP6	218 aa		10.83	□□□□□ -0.68
RBM39-238	ENST00000493853	ADGRB1	O14514	1584 aa		10.82	□□□□□ -0.68
RBM39-238	ENST00000493853	SRPK2	P78362	688 aa	Known RBP	10.82	□□□□□ -0.68
RBM39-238	ENST00000493853	C6orf132	Q5T0Z8	1188 aa		10.82	□□□□□ -0.68
RBM39-238	ENST00000493853	KCNV2	Q8TDN2	545 aa		10.82	□□□□□ -0.68
RBM39-238	ENST00000493853	ARHGEF1	Q92888	912 aa	Known RBP	10.82	□□□□□ -0.68
RBM39-238	ENST00000493853	PRDM11	Q9NQV5	511 aa		10.82	□□□□□ -0.68
RBM39-238	ENST00000493853	BTG4	Q9NY30	223 aa		10.82	□□□□□ -0.68
RBM39-238	ENST00000493853	SLIT2	O94813	1529 aa		10.81	□□□□□ -0.68
RBM39-238	ENST00000493853	MAP3K7	O43318	606 aa		10.81	□□□□□ -0.68
RBM39-238	ENST00000493853	COL9A1	P20849	921 aa		10.81	□□□□□ -0.68
RBM39-238	ENST00000493853	NEUROD1	Q13562	356 aa		10.81	□□□□□ -0.68
RBM39-238	ENST00000493853	NBPF1	Q3BBV0	1214 aa		10.81	□□□□□ -0.68
RBM39-238	ENST00000493853	RALGAPB	Q86X10	1494 aa		10.81	□□□□□ -0.68
RBM39-238	ENST00000493853	NUTM2G	Q5VZR2	741 aa		10.8	□□□□□ -0.68
RBM39-238	ENST00000493853	ACE	P12821	1306 aa		10.8	□□□□□ -0.68
RBM39-238	ENST00000493853	TULP4	Q9NRJ4	1543 aa		10.79	□□□□□ -0.68
RBM39-238	ENST00000493853	EN1	Q05925	392 aa	Predicted RBP	10.79	□□□□□ -0.68
RBM39-238	ENST00000493853	FAM98C	Q17RN3	349 aa	Known RBP	10.79	□□□□□ -0.68
RBM39-238	ENST00000493853	NBPF8	Q3BBV2	869 aa		10.79	□□□□□ -0.68
RBM39-238	ENST00000493853	KRT27	Q7Z3Y8	459 aa		10.79	□□□□□ -0.68
RBM39-238	ENST00000493853	ABTB2	Q8N961	1025 aa		10.79	□□□□□ -0.68
RBM39-238	ENST00000493853	L3MBTL2	Q969R5	705 aa		10.79	□□□□□ -0.68
RBM39-238	ENST00000493853	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.79	□□□□□ -0.68
RBM39-238	ENST00000493853	ONECUT3	O60422	494 aa	Predicted RBP	10.78	□□□□□ -0.68
RBM39-238	ENST00000493853	EVA1C	P58658	441 aa		10.78	□□□□□ -0.68
RBM39-238	ENST00000493853	SIN3A	Q96ST3	1273 aa		10.78	□□□□□ -0.68
RBM39-238	ENST00000493853	ADGRB2	O60241	1585 aa		10.77	□□□□□ -0.68
RBM39-238	ENST00000493853	USP32	Q8NFA0	1604 aa		10.77	□□□□□ -0.68
RBM39-238	ENST00000493853	PLEKHG3	A1L390	1219 aa		10.77	□□□□□ -0.69
RBM39-238	ENST00000493853	ZC3H6	P61129	1189 aa	Known RBP	10.77	□□□□□ -0.69
RBM39-238	ENST00000493853	PROX2	Q3B8N5	592 aa		10.77	□□□□□ -0.69
RBM39-238	ENST00000493853	STRN4	Q9NRL3	753 aa		10.77	□□□□□ -0.69
RBM39-238	ENST00000493853	GOLGA8CP	A6NN73	597 aa		10.76	□□□□□ -0.69
RBM39-238	ENST00000493853	CHRNA2	Q15822	529 aa		10.76	□□□□□ -0.69
RBM39-238	ENST00000493853	TSR1	Q2NL82	804 aa	Known RBP	10.76	□□□□□ -0.69
RBM39-238	ENST00000493853	NLRP13	Q86W25	1043 aa		10.76	□□□□□ -0.69
RBM39-238	ENST00000493853	MRPL50	Q8N5N7	158 aa	Known RBP	10.76	□□□□□ -0.69
RBM39-238	ENST00000493853	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.75	□□□□□ -0.69
RBM39-238	ENST00000493853	KCTD12	Q96CX2	325 aa	Known RBP	10.75	□□□□□ -0.69
RBM39-238	ENST00000493853	NBPF3	Q9H094	633 aa		10.75	□□□□□ -0.69
RBM39-238	ENST00000493853	BLM	P54132	1417 aa	Predicted RBP	10.75	□□□□□ -0.69
RBM39-238	ENST00000493853	BAG6	P46379	1132 aa		10.74	□□□□□ -0.69
RBM39-238	ENST00000493853	CABP1	Q9NZU7	370 aa		10.74	□□□□□ -0.69
RBM39-238	ENST00000493853	USP35	Q9P2H5	1018 aa		10.74	□□□□□ -0.69
RBM39-238	ENST00000493853	RABGEF1	Q9UJ41	708 aa		10.74	□□□□□ -0.69
RBM39-238	ENST00000493853	SPATA31A5	Q5VU36	1347 aa		10.74	□□□□□ -0.69
RBM39-238	ENST00000493853	EVC2	Q86UK5	1308 aa		10.74	□□□□□ -0.69
RBM39-238	ENST00000493853	SPATA31A7	Q8IWB4	1347 aa		10.74	□□□□□ -0.69
RBM39-238	ENST00000493853	POLR3A	O14802	1390 aa	Predicted RBP	10.74	□□□□□ -0.69
RBM39-238	ENST00000493853	KIAA0232	Q92628	1395 aa		10.74	□□□□□ -0.69
RBM39-238	ENST00000493853	ATP7B	P35670	1465 aa		10.74	□□□□□ -0.69
RBM39-238	ENST00000493853	RGPD8	O14715	1765 aa	Predicted RBP	10.73	□□□□□ -0.69
RBM39-238	ENST00000493853	ZBTB7C	A1YPR0	619 aa		10.73	□□□□□ -0.69

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