RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 SLC39A7Q92504 469 aa14.91□□□□□ -0.02
COL6A3-214ENST00000493608 METRNQ9UJH8 293 aa14.91□□□□□ -0.02
COL6A3-214ENST00000493608 THRAP3Q9Y2W1 955 aaKnown RBP14.91□□□□□ -0.02
COL6A3-214ENST00000493608 TRIM37O94972 964 aa14.9□□□□□ -0.02
COL6A3-214ENST00000493608 C7P10643 843 aa14.9□□□□□ -0.02
COL6A3-214ENST00000493608 FBLN1P23142 703 aa14.9□□□□□ -0.02
COL6A3-214ENST00000493608 IFNL1Q8IU54 200 aa14.9□□□□□ -0.02
COL6A3-214ENST00000493608 WDR17Q8IZU2 1322 aa14.9□□□□□ -0.02
COL6A3-214ENST00000493608 LTN1O94822 1766 aa14.89□□□□□ -0.03
COL6A3-214ENST00000493608 BAG6P46379 1132 aa14.89□□□□□ -0.03
COL6A3-214ENST00000493608 EN1Q05925 392 aaPredicted RBP14.89□□□□□ -0.03
COL6A3-214ENST00000493608 FAM196AQ6ZSG2 479 aa14.89□□□□□ -0.03
COL6A3-214ENST00000493608 NINLQ9Y2I6 1382 aa14.88□□□□□ -0.03
COL6A3-214ENST00000493608 USP54Q70EL1 1684 aa14.87□□□□□ -0.03
COL6A3-214ENST00000493608 RGPD1P0DJD0 1748 aa14.87□□□□□ -0.03
COL6A3-214ENST00000493608 TTLL13PA6NNM8 815 aa14.87□□□□□ -0.03
COL6A3-214ENST00000493608 POLR3GLQ9BT43 218 aa14.87□□□□□ -0.03
COL6A3-214ENST00000493608 COG3Q96JB2 828 aa14.86□□□□□ -0.03
COL6A3-214ENST00000493608 CARD10Q9BWT7 1032 aa14.86□□□□□ -0.03
COL6A3-214ENST00000493608 GGNBP2Q9H3C7 697 aa14.86□□□□□ -0.03
COL6A3-214ENST00000493608 PARP4Q9UKK3 1724 aaKnown RBP14.86□□□□□ -0.03
COL6A3-214ENST00000493608 ANKRD36BQ8N2N9 1353 aa14.85□□□□□ -0.03
COL6A3-214ENST00000493608 OVOS2A0A0J9YW53 1432 aa14.85□□□□□ -0.03
COL6A3-214ENST00000493608 OVOS2Q6IE36 1432 aa14.85□□□□□ -0.03
COL6A3-214ENST00000493608 DDB1Q16531 1140 aa14.85□□□□□ -0.03
COL6A3-214ENST00000493608 CDCA8Q53HL2 280 aa14.85□□□□□ -0.03
COL6A3-214ENST00000493608 NLRP2Q9NX02 1062 aa14.85□□□□□ -0.03
COL6A3-214ENST00000493608 TNS1Q9HBL0 1735 aaKnown RBP14.84□□□□□ -0.03
COL6A3-214ENST00000493608 FYB1O15117 783 aa14.84□□□□□ -0.03
COL6A3-214ENST00000493608 APBA3O96018 575 aa14.84□□□□□ -0.03
COL6A3-214ENST00000493608 PYGBP11216 843 aa14.84□□□□□ -0.03
COL6A3-214ENST00000493608 EZH2Q15910 746 aaKnown RBP14.84□□□□□ -0.03
COL6A3-214ENST00000493608 ANKRD24Q8TF21 1146 aa14.84□□□□□ -0.03
COL6A3-214ENST00000493608 LTV1Q96GA3 475 aaPredicted RBP14.84□□□□□ -0.03
COL6A3-214ENST00000493608 HSPA5P11021 654 aaKnown RBP14.83□□□□□ -0.04
COL6A3-214ENST00000493608 WNK3Q9BYP7 1800 aa14.82□□□□□ -0.04
COL6A3-214ENST00000493608 LRRC37A3O60309 1634 aa14.82□□□□□ -0.04
COL6A3-214ENST00000493608 EIF4G2P78344 907 aaKnown RBP eCLIP14.82□□□□□ -0.04
COL6A3-214ENST00000493608 MARCH10Q8NA82 808 aaPredicted RBP14.82□□□□□ -0.04
COL6A3-214ENST00000493608 IP6K1Q92551 441 aa14.82□□□□□ -0.04
COL6A3-214ENST00000493608 OTUD5Q96G74 571 aa14.82□□□□□ -0.04
COL6A3-214ENST00000493608 CARD14Q9BXL6 1004 aa14.82□□□□□ -0.04
COL6A3-214ENST00000493608 ERBB3P21860 1342 aa14.82□□□□□ -0.04
COL6A3-214ENST00000493608 POTEFA5A3E0 1075 aa14.81□□□□□ -0.04
COL6A3-214ENST00000493608 PSDA5PKW4 1024 aaPredicted RBP14.81□□□□□ -0.04
COL6A3-214ENST00000493608 EXOC5O00471 708 aa14.81□□□□□ -0.04
COL6A3-214ENST00000493608 AMPHP49418 695 aa14.81□□□□□ -0.04
COL6A3-214ENST00000493608 GSE1Q14687 1217 aa14.81□□□□□ -0.04
COL6A3-214ENST00000493608 RRS1Q15050 365 aaKnown RBP14.81□□□□□ -0.04
COL6A3-214ENST00000493608 MAP3K19Q56UN5 1328 aa14.81□□□□□ -0.04
COL6A3-214ENST00000493608 KAT6BQ8WYB5 2073 aa14.81□□□□□ -0.04
COL6A3-214ENST00000493608 MYOM1P52179 1685 aa14.81□□□□□ -0.04
COL6A3-214ENST00000493608 PTF1AQ7RTS3 328 aa14.8□□□□□ -0.04
COL6A3-214ENST00000493608 CAMKK2Q96RR4 588 aa14.8□□□□□ -0.04
COL6A3-214ENST00000493608 CDCA7Q9BWT1 371 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-214ENST00000493608 ABCC6O95255 1503 aa14.8□□□□□ -0.04
COL6A3-214ENST00000493608 SBF2Q86WG5 1849 aa14.8□□□□□ -0.04
COL6A3-214ENST00000493608 POTEJP0CG39 1038 aa14.79□□□□□ -0.04
COL6A3-214ENST00000493608 CCDC7Q96M83 1385 aa14.79□□□□□ -0.04
COL6A3-214ENST00000493608 KIF20BQ96Q89 1820 aa14.78□□□□□ -0.04
COL6A3-214ENST00000493608 PEAK1Q9H792 1746 aa14.78□□□□□ -0.04
COL6A3-214ENST00000493608 OVOS2A0A0G2JMS6 1433 aa14.78□□□□□ -0.04
COL6A3-214ENST00000493608 DISP2A7MBM2 1401 aa14.78□□□□□ -0.04
COL6A3-214ENST00000493608 NSD3Q9BZ95 1437 aa14.78□□□□□ -0.04
COL6A3-214ENST00000493608 HOXC9P31274 260 aa14.78□□□□□ -0.04
COL6A3-214ENST00000493608 SPOCK2Q92563 424 aa14.78□□□□□ -0.04
COL6A3-214ENST00000493608 RGPD2P0DJD1 1756 aa14.78□□□□□ -0.04
COL6A3-214ENST00000493608 IL2RBP14784 551 aa14.76□□□□□ -0.05
COL6A3-214ENST00000493608 R3HDM1Q15032 1099 aaKnown RBP14.76□□□□□ -0.05
COL6A3-214ENST00000493608 C11orf95C9JLR9 678 aaPredicted RBP14.75□□□□□ -0.05
COL6A3-214ENST00000493608 CHRM1P11229 460 aaPredicted RBP14.75□□□□□ -0.05
COL6A3-214ENST00000493608 ACSBG1Q96GR2 724 aa14.75□□□□□ -0.05
COL6A3-214ENST00000493608 TRIM35Q9UPQ4 493 aa14.75□□□□□ -0.05
COL6A3-214ENST00000493608 SRCAPQ6ZRS2 3230 aa14.74□□□□□ -0.05
COL6A3-214ENST00000493608 KCNQ2O43526 872 aa14.73□□□□□ -0.05
COL6A3-214ENST00000493608 HSP90AB2PQ58FF8 381 aa14.73□□□□□ -0.05
COL6A3-214ENST00000493608 USHBP1Q8N6Y0 703 aa14.73□□□□□ -0.05
COL6A3-214ENST00000493608 TMEM106CQ9BVX2 250 aa14.73□□□□□ -0.05
COL6A3-214ENST00000493608 BCL11BQ9C0K0 894 aaPredicted RBP14.73□□□□□ -0.05
COL6A3-214ENST00000493608 PCDHB8Q9UN66 801 aa14.73□□□□□ -0.05
COL6A3-214ENST00000493608 PPM1GO15355 546 aaPredicted RBP14.72□□□□□ -0.05
COL6A3-214ENST00000493608 DDX54Q8TDD1 881 aaKnown RBP14.72□□□□□ -0.05
COL6A3-214ENST00000493608 EMILIN1Q9Y6C2 1016 aa14.72□□□□□ -0.05
COL6A3-214ENST00000493608 TNS2Q63HR2 1409 aa14.72□□□□□ -0.05
COL6A3-214ENST00000493608 TNNT2P45379 298 aaPredicted RBP14.71□□□□□ -0.05
COL6A3-214ENST00000493608 NBPF6Q5VWK0 638 aa14.71□□□□□ -0.05
COL6A3-214ENST00000493608 NBPF4Q96M43 638 aa14.71□□□□□ -0.05
COL6A3-214ENST00000493608 PANK3Q9H999 370 aa14.71□□□□□ -0.05
COL6A3-214ENST00000493608 COLQQ9Y215 455 aaPredicted RBP14.71□□□□□ -0.05
COL6A3-214ENST00000493608 NUP188Q5SRE5 1749 aa14.71□□□□□ -0.05
COL6A3-214ENST00000493608 RREB1Q92766 1687 aa14.71□□□□□ -0.06
COL6A3-214ENST00000493608 MAP2P11137 1827 aaKnown RBP14.71□□□□□ -0.06
COL6A3-214ENST00000493608 CGNL1Q0VF96 1302 aa14.7□□□□□ -0.06
COL6A3-214ENST00000493608 PLSCR1O15162 318 aa14.7□□□□□ -0.06
COL6A3-214ENST00000493608 IER5LQ5T953 404 aa14.7□□□□□ -0.06
COL6A3-214ENST00000493608 FAM208AQ9UK61 1670 aaKnown RBP14.7□□□□□ -0.06
COL6A3-214ENST00000493608 PARD3Q8TEW0 1356 aa14.7□□□□□ -0.06
COL6A3-214ENST00000493608 NBPF14Q5TI25 921 aa14.69□□□□□ -0.06
COL6A3-214ENST00000493608 RTL1A6NKG5 1358 aa14.69□□□□□ -0.06
COL6A3-214ENST00000493608 BCL9O00512 1426 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms