RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 NBPF14Q5TI25 921 aa18.07■□□□□ 0.48
MSH6-208ENST00000493177 BCL11BQ9C0K0 894 aaPredicted RBP18.07■□□□□ 0.48
MSH6-208ENST00000493177 KIF24Q5T7B8 1368 aa18.06■□□□□ 0.48
MSH6-208ENST00000493177 NHSQ6T4R5 1651 aa18.06■□□□□ 0.48
MSH6-208ENST00000493177 HSP90AB2PQ58FF8 381 aa18.06■□□□□ 0.48
MSH6-208ENST00000493177 DDX54Q8TDD1 881 aaKnown RBP18.06■□□□□ 0.48
MSH6-208ENST00000493177 ACSBG1Q96GR2 724 aa18.06■□□□□ 0.48
MSH6-208ENST00000493177 EMILIN1Q9Y6C2 1016 aa18.06■□□□□ 0.48
MSH6-208ENST00000493177 INSRP06213 1382 aa18.05■□□□□ 0.48
MSH6-208ENST00000493177 R3HDM1Q15032 1099 aaKnown RBP18.05■□□□□ 0.48
MSH6-208ENST00000493177 USHBP1Q8N6Y0 703 aa18.05■□□□□ 0.48
MSH6-208ENST00000493177 RAPGEF4Q8WZA2 1011 aa18.05■□□□□ 0.48
MSH6-208ENST00000493177 BCL9O00512 1426 aa18.04■□□□□ 0.48
MSH6-208ENST00000493177 TATP17735 454 aaPredicted RBP18.03■□□□□ 0.48
MSH6-208ENST00000493177 BTAF1O14981 1849 aa18.02■□□□□ 0.48
MSH6-208ENST00000493177 NBPF6Q5VWK0 638 aa18.02■□□□□ 0.48
MSH6-208ENST00000493177 DOT1LQ8TEK3 1739 aa18.02■□□□□ 0.48
MSH6-208ENST00000493177 NBPF4Q96M43 638 aa18.02■□□□□ 0.48
MSH6-208ENST00000493177 MEGF6O75095 1541 aa18.02■□□□□ 0.47
MSH6-208ENST00000493177 SHANK3Q9BYB0 1731 aa18.01■□□□□ 0.47
MSH6-208ENST00000493177 PLSCR1O15162 318 aa18.01■□□□□ 0.47
MSH6-208ENST00000493177 MTHFSP49914 203 aa18.01■□□□□ 0.47
MSH6-208ENST00000493177 ZCRB1Q8TBF4 217 aaKnown RBP18.01■□□□□ 0.47
MSH6-208ENST00000493177 POLKQ9UBT6 870 aa18.01■□□□□ 0.47
MSH6-208ENST00000493177 PTF1AQ7RTS3 328 aa18■□□□□ 0.47
MSH6-208ENST00000493177 SYTL4Q96C24 671 aaPredicted RBP18■□□□□ 0.47
MSH6-208ENST00000493177 KCNQ2O43526 872 aa17.99■□□□□ 0.47
MSH6-208ENST00000493177 CFAP53Q96M91 514 aa17.99■□□□□ 0.47
MSH6-208ENST00000493177 MRS2Q9HD23 443 aa17.99■□□□□ 0.47
MSH6-208ENST00000493177 CCER2I3L3R5 266 aa17.98■□□□□ 0.47
MSH6-208ENST00000493177 LRP5O75197 1615 aa17.98■□□□□ 0.47
MSH6-208ENST00000493177 CCDC184Q52MB2 194 aa17.96■□□□□ 0.47
MSH6-208ENST00000493177 TXNRD1Q16881 649 aa17.95■□□□□ 0.46
MSH6-208ENST00000493177 PCDH11XQ9BZA7 1347 aa17.95■□□□□ 0.46
MSH6-208ENST00000493177 PCDH11YQ9BZA8 1340 aa17.95■□□□□ 0.46
MSH6-208ENST00000493177 PKD1L3Q7Z443 1732 aa17.93■□□□□ 0.46
MSH6-208ENST00000493177 STK32BQ9NY57 414 aa17.93■□□□□ 0.46
MSH6-208ENST00000493177 PRIM1P49642 420 aaKnown RBP17.91■□□□□ 0.46
MSH6-208ENST00000493177 EIF4A2Q14240 407 aaKnown RBP17.91■□□□□ 0.46
MSH6-208ENST00000493177 EYA1Q99502 592 aa17.91■□□□□ 0.46
MSH6-208ENST00000493177 SPG7Q9UQ90 795 aa17.91■□□□□ 0.46
MSH6-208ENST00000493177 DIAPH1O60610 1272 aaKnown RBP17.9■□□□□ 0.46
MSH6-208ENST00000493177 ITGB4P16144 1822 aa17.89■□□□□ 0.45
MSH6-208ENST00000493177 WDR43Q15061 677 aaKnown RBP eCLIP17.89■□□□□ 0.45
MSH6-208ENST00000493177 ANO8Q9HCE9 1232 aaPredicted RBP17.89■□□□□ 0.45
MSH6-208ENST00000493177 NUDCQ9Y266 331 aa17.89■□□□□ 0.45
MSH6-208ENST00000493177 U2SURPO15042 1029 aaKnown RBP17.88■□□□□ 0.45
MSH6-208ENST00000493177 PROM2Q8N271 834 aa17.88■□□□□ 0.45
MSH6-208ENST00000493177 COL3A1P02461 1466 aaPredicted RBP17.88■□□□□ 0.45
MSH6-208ENST00000493177 FAM9BQ8IZU0 186 aa17.87■□□□□ 0.45
MSH6-208ENST00000493177 NCAPD2Q15021 1401 aa17.87■□□□□ 0.45
MSH6-208ENST00000493177 LY75O60449 1722 aa17.86■□□□□ 0.45
MSH6-208ENST00000493177 SLC15A2Q16348 729 aa17.86■□□□□ 0.45
MSH6-208ENST00000493177 PPP1R1BQ9UD71 204 aaPredicted RBP17.86■□□□□ 0.45
MSH6-208ENST00000493177 IL13P35225 146 aa17.85■□□□□ 0.45
MSH6-208ENST00000493177 MPRIPQ6WCQ1 1025 aa17.85■□□□□ 0.45
MSH6-208ENST00000493177 CASZ1Q86V15 1759 aa17.85■□□□□ 0.45
MSH6-208ENST00000493177 SPON1Q9HCB6 807 aa17.85■□□□□ 0.45
MSH6-208ENST00000493177 TOGARAM1Q9Y4F4 1720 aa17.85■□□□□ 0.45
MSH6-208ENST00000493177 IGSF1Q8N6C5 1336 aa17.84■□□□□ 0.45
MSH6-208ENST00000493177 CYP27B1O15528 508 aa17.84■□□□□ 0.45
MSH6-208ENST00000493177 U2AF1L5P0DN76 240 aaPredicted RBP17.84■□□□□ 0.45
MSH6-208ENST00000493177 U2AF1Q01081 240 aaKnown RBP eCLIP17.84■□□□□ 0.45
MSH6-208ENST00000493177 SLC27A3Q5K4L6 730 aa17.84■□□□□ 0.45
MSH6-208ENST00000493177 PNISRQ8TF01 805 aaKnown RBP17.84■□□□□ 0.45
MSH6-208ENST00000493177 PAPPAQ13219 1627 aa17.83■□□□□ 0.45
MSH6-208ENST00000493177 IFNL2Q8IZJ0 200 aa17.83■□□□□ 0.44
MSH6-208ENST00000493177 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.82■□□□□ 0.44
MSH6-208ENST00000493177 CCNL1Q9UK58 526 aaPredicted RBP17.82■□□□□ 0.44
MSH6-208ENST00000493177 PLEKHO1Q53GL0 409 aaPredicted RBP17.81■□□□□ 0.44
MSH6-208ENST00000493177 ZBTB7AO95365 584 aa17.8■□□□□ 0.44
MSH6-208ENST00000493177 LRRC4BQ9NT99 713 aa17.8■□□□□ 0.44
MSH6-208ENST00000493177 ADAMTS8Q9UP79 889 aa17.8■□□□□ 0.44
MSH6-208ENST00000493177 C5P01031 1676 aa17.8■□□□□ 0.44
MSH6-208ENST00000493177 QSER1Q2KHR3 1735 aa17.79■□□□□ 0.44
MSH6-208ENST00000493177 HMOX1P09601 288 aa17.79■□□□□ 0.44
MSH6-208ENST00000493177 PHKG2P15735 406 aa17.79■□□□□ 0.44
MSH6-208ENST00000493177 KCNQ4P56696 695 aa17.79■□□□□ 0.44
MSH6-208ENST00000493177 SULT6B1Q6IMI4 303 aa17.79■□□□□ 0.44
MSH6-208ENST00000493177 TMOD3Q9NYL9 352 aa17.79■□□□□ 0.44
MSH6-208ENST00000493177 TUBGCP6Q96RT7 1819 aa17.79■□□□□ 0.44
MSH6-208ENST00000493177 PALLDQ8WX93 1383 aa17.79■□□□□ 0.44
MSH6-208ENST00000493177 PLEKHG2Q9H7P9 1386 aa17.79■□□□□ 0.44
MSH6-208ENST00000493177 ZNF827Q17R98 1081 aa17.78■□□□□ 0.44
MSH6-208ENST00000493177 AMOTQ4VCS5 1084 aa17.78■□□□□ 0.44
MSH6-208ENST00000493177 C1orf141Q5JVX7 400 aa17.78■□□□□ 0.44
MSH6-208ENST00000493177 ZNF530Q6P9A1 599 aaPredicted RBP17.78■□□□□ 0.44
MSH6-208ENST00000493177 SMARCC1Q92922 1105 aaPredicted RBP17.78■□□□□ 0.44
MSH6-208ENST00000493177 TFCP2L1Q9NZI6 479 aa17.78■□□□□ 0.44
MSH6-208ENST00000493177 TAF1LQ8IZX4 1826 aa17.77■□□□□ 0.44
MSH6-208ENST00000493177 HSP90AB1P08238 724 aaKnown RBP17.77■□□□□ 0.44
MSH6-208ENST00000493177 HMGB2P26583 209 aaKnown RBP17.77■□□□□ 0.44
MSH6-208ENST00000493177 AEBP1Q8IUX7 1158 aa17.77■□□□□ 0.44
MSH6-208ENST00000493177 PDGFDQ9GZP0 370 aaPredicted RBP17.77■□□□□ 0.44
MSH6-208ENST00000493177 ATF5Q9Y2D1 282 aaPredicted RBP17.77■□□□□ 0.44
MSH6-208ENST00000493177 MSH5O43196 834 aa17.76■□□□□ 0.43
MSH6-208ENST00000493177 NKX1-1Q15270 411 aaPredicted RBP17.76■□□□□ 0.43
MSH6-208ENST00000493177 VIRMAQ69YN4 1812 aaKnown RBP17.75■□□□□ 0.43
MSH6-208ENST00000493177 CCDC146Q8IYE0 955 aa17.75■□□□□ 0.43
MSH6-208ENST00000493177 PNNQ9H307 717 aaKnown RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms