RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CSB-PGBD3P0DP91 1061 aa12.62□□□□□ -0.39
USP54-214ENST00000492357 TATP17735 454 aaPredicted RBP12.62□□□□□ -0.39
USP54-214ENST00000492357 LTV1Q96GA3 475 aaPredicted RBP12.62□□□□□ -0.39
USP54-214ENST00000492357 PHACTR3Q96KR7 559 aa12.62□□□□□ -0.39
USP54-214ENST00000492357 NLRP2Q9NX02 1062 aa12.62□□□□□ -0.39
USP54-214ENST00000492357 THRAP3Q9Y2W1 955 aaKnown RBP12.62□□□□□ -0.39
USP54-214ENST00000492357 LRRC37A3O60309 1634 aa12.62□□□□□ -0.39
USP54-214ENST00000492357 SLFN5Q08AF3 891 aa12.61□□□□□ -0.39
USP54-214ENST00000492357 CHRNA2Q15822 529 aa12.61□□□□□ -0.39
USP54-214ENST00000492357 TRIM35Q9UPQ4 493 aa12.61□□□□□ -0.39
USP54-214ENST00000492357 SPG7Q9UQ90 795 aa12.61□□□□□ -0.39
USP54-214ENST00000492357 MAP3K5Q99683 1374 aa12.6□□□□□ -0.39
USP54-214ENST00000492357 GNAT3A8MTJ3 354 aa12.6□□□□□ -0.39
USP54-214ENST00000492357 EVA1CP58658 441 aa12.6□□□□□ -0.39
USP54-214ENST00000492357 GNAI1P63096 354 aa12.6□□□□□ -0.39
USP54-214ENST00000492357 TOM1L2Q6ZVM7 507 aa12.6□□□□□ -0.39
USP54-214ENST00000492357 BTG4Q9NY30 223 aa12.6□□□□□ -0.39
USP54-214ENST00000492357 WNK3Q9BYP7 1800 aa12.6□□□□□ -0.39
USP54-214ENST00000492357 HSP90AB1P08238 724 aaKnown RBP12.59□□□□□ -0.39
USP54-214ENST00000492357 HSPA1LP34931 641 aa12.59□□□□□ -0.39
USP54-214ENST00000492357 MTHFSDQ2M296 383 aaKnown RBP12.59□□□□□ -0.39
USP54-214ENST00000492357 AKAP4Q5JQC9 854 aa12.59□□□□□ -0.39
USP54-214ENST00000492357 FNBP4Q8N3X1 1017 aaPredicted RBP12.59□□□□□ -0.39
USP54-214ENST00000492357 RTF1Q92541 710 aaKnown RBP12.59□□□□□ -0.39
USP54-214ENST00000492357 ZNF428Q96B54 188 aa12.59□□□□□ -0.39
USP54-214ENST00000492357 IFT57Q9NWB7 429 aa12.59□□□□□ -0.39
USP54-214ENST00000492357 CEMIPQ8WUJ3 1361 aa12.58□□□□□ -0.4
USP54-214ENST00000492357 DISP2A7MBM2 1401 aa12.58□□□□□ -0.4
USP54-214ENST00000492357 IL2RBP14784 551 aa12.58□□□□□ -0.4
USP54-214ENST00000492357 DUSP27Q5VZP5 1158 aa12.58□□□□□ -0.4
USP54-214ENST00000492357 SOS1Q07889 1333 aaPredicted RBP12.58□□□□□ -0.4
USP54-214ENST00000492357 MEGF6O75095 1541 aa12.57□□□□□ -0.4
USP54-214ENST00000492357 C1orf141Q5JVX7 400 aa12.57□□□□□ -0.4
USP54-214ENST00000492357 CFAP44Q96MT7 982 aa12.57□□□□□ -0.4
USP54-214ENST00000492357 ZBTB22O15209 634 aa12.56□□□□□ -0.4
USP54-214ENST00000492357 ZNF853P0CG23 659 aa12.56□□□□□ -0.4
USP54-214ENST00000492357 NEUROD2Q15784 382 aa12.56□□□□□ -0.4
USP54-214ENST00000492357 BARGINQ6ZT62 677 aa12.56□□□□□ -0.4
USP54-214ENST00000492357 UNC5CLQ8IV45 518 aa12.56□□□□□ -0.4
USP54-214ENST00000492357 CHMP4AQ9BY43 222 aa12.56□□□□□ -0.4
USP54-214ENST00000492357 RRP7AQ9Y3A4 280 aaKnown RBP12.56□□□□□ -0.4
USP54-214ENST00000492357 PCDH11XQ9BZA7 1347 aa12.56□□□□□ -0.4
USP54-214ENST00000492357 PCDH11YQ9BZA8 1340 aa12.56□□□□□ -0.4
USP54-214ENST00000492357 LRP6O75581 1613 aa12.55□□□□□ -0.4
USP54-214ENST00000492357 PLEKHG5O94827 1062 aa12.55□□□□□ -0.4
USP54-214ENST00000492357 VPS72Q15906 364 aa12.55□□□□□ -0.4
USP54-214ENST00000492357 ZNF530Q6P9A1 599 aaPredicted RBP12.55□□□□□ -0.4
USP54-214ENST00000492357 LARP1Q6PKG0 1096 aaKnown RBP12.55□□□□□ -0.4
USP54-214ENST00000492357 POTEDQ86YR6 584 aa12.55□□□□□ -0.4
USP54-214ENST00000492357 IFNL2Q8IZJ0 200 aa12.55□□□□□ -0.4
USP54-214ENST00000492357 USHBP1Q8N6Y0 703 aa12.55□□□□□ -0.4
USP54-214ENST00000492357 FBXO41Q8TF61 875 aa12.55□□□□□ -0.4
USP54-214ENST00000492357 MRC1P22897 1456 aa12.54□□□□□ -0.4
USP54-214ENST00000492357 BCL9LQ86UU0 1499 aa12.54□□□□□ -0.4
USP54-214ENST00000492357 SCN11AQ9UI33 1791 aa12.54□□□□□ -0.4
USP54-214ENST00000492357 ADAMTS2O95450 1211 aa12.54□□□□□ -0.4
USP54-214ENST00000492357 NKX1-1Q15270 411 aaPredicted RBP12.54□□□□□ -0.4
USP54-214ENST00000492357 SALL2Q9Y467 1007 aaPredicted RBP12.54□□□□□ -0.4
USP54-214ENST00000492357 SPATA31A1Q5TZJ5 1347 aa12.54□□□□□ -0.4
USP54-214ENST00000492357 SPATA31A5Q5VU36 1347 aa12.54□□□□□ -0.4
USP54-214ENST00000492357 SPATA31A7Q8IWB4 1347 aa12.54□□□□□ -0.4
USP54-214ENST00000492357 NUTM2BA6NNL0 878 aaPredicted RBP12.53□□□□□ -0.4
USP54-214ENST00000492357 NUTM2EB1AL46 878 aaPredicted RBP12.53□□□□□ -0.4
USP54-214ENST00000492357 NUTM2AQ8IVF1 878 aaPredicted RBP12.53□□□□□ -0.4
USP54-214ENST00000492357 ZCRB1Q8TBF4 217 aaKnown RBP12.53□□□□□ -0.4
USP54-214ENST00000492357 NGLY1Q96IV0 654 aa12.53□□□□□ -0.4
USP54-214ENST00000492357 DCAF5Q96JK2 942 aa12.53□□□□□ -0.4
USP54-214ENST00000492357 STRN4Q9NRL3 753 aa12.53□□□□□ -0.4
USP54-214ENST00000492357 FOXD4L1Q9NU39 408 aa12.53□□□□□ -0.4
USP54-214ENST00000492357 VIRMAQ69YN4 1812 aaKnown RBP12.53□□□□□ -0.4
USP54-214ENST00000492357 TNS2Q63HR2 1409 aa12.53□□□□□ -0.4
USP54-214ENST00000492357 SHANK3Q9BYB0 1731 aa12.52□□□□□ -0.41
USP54-214ENST00000492357 SIPA1L3O60292 1781 aaPredicted RBP12.52□□□□□ -0.41
USP54-214ENST00000492357 CHL1O00533 1208 aa12.52□□□□□ -0.41
USP54-214ENST00000492357 SLC4A2P04920 1241 aa12.52□□□□□ -0.41
USP54-214ENST00000492357 PHKG2P15735 406 aa12.52□□□□□ -0.41
USP54-214ENST00000492357 CDCA7LQ96GN5 454 aa12.52□□□□□ -0.41
USP54-214ENST00000492357 RNF123Q5XPI4 1314 aa12.52□□□□□ -0.41
USP54-214ENST00000492357 FANCIQ9NVI1 1328 aa12.52□□□□□ -0.41
USP54-214ENST00000492357 TEFQ10587 303 aa12.5□□□□□ -0.41
USP54-214ENST00000492357 TAF7Q15545 349 aaPredicted RBP12.5□□□□□ -0.41
USP54-214ENST00000492357 RCAN3Q9UKA8 241 aa12.5□□□□□ -0.41
USP54-214ENST00000492357 KDM3BQ7LBC6 1761 aa12.5□□□□□ -0.41
USP54-214ENST00000492357 ATRNO75882 1429 aa12.49□□□□□ -0.41
USP54-214ENST00000492357 ERVV-2B6SEH9 535 aa12.49□□□□□ -0.41
USP54-214ENST00000492357 RNMTO43148 476 aaKnown RBP12.49□□□□□ -0.41
USP54-214ENST00000492357 HOXB7P09629 217 aa12.49□□□□□ -0.41
USP54-214ENST00000492357 ALDH1L2Q3SY69 923 aa12.49□□□□□ -0.41
USP54-214ENST00000492357 MEX3CQ5U5Q3 659 aaKnown RBP12.49□□□□□ -0.41
USP54-214ENST00000492357 ERICH6BQ5W0A0 696 aa12.49□□□□□ -0.41
USP54-214ENST00000492357 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.49□□□□□ -0.41
USP54-214ENST00000492357 IL17REQ8NFR9 667 aa12.49□□□□□ -0.41
USP54-214ENST00000492357 C8orf37Q96NL8 207 aa12.49□□□□□ -0.41
USP54-214ENST00000492357 SPINK5Q9NQ38 1064 aaPredicted RBP12.49□□□□□ -0.41
USP54-214ENST00000492357 THSD7AQ9UPZ6 1657 aa12.48□□□□□ -0.41
USP54-214ENST00000492357 EXOC5O00471 708 aa12.48□□□□□ -0.41
USP54-214ENST00000492357 CYP27B1O15528 508 aa12.48□□□□□ -0.41
USP54-214ENST00000492357 BRPF1P55201 1214 aaPredicted RBP12.48□□□□□ -0.41
USP54-214ENST00000492357 USP21Q9UK80 565 aa12.48□□□□□ -0.41
USP54-214ENST00000492357 TRPC5Q9UL62 973 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms