RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 RNF144AP50876 292 aaPredicted RBP10.9□□□□□ -0.66
SCN1A-206ENST00000491429 PCDHB9Q9Y5E1 797 aa10.89□□□□□ -0.67
SCN1A-206ENST00000491429 ATP5J2-PTCD1G3V325 749 aa10.88□□□□□ -0.67
SCN1A-206ENST00000491429 MARSP56192 900 aaKnown RBP10.88□□□□□ -0.67
SCN1A-206ENST00000491429 SRSF11Q05519 484 aaKnown RBP10.88□□□□□ -0.67
SCN1A-206ENST00000491429 ZBBXA8MT70 800 aa10.87□□□□□ -0.67
SCN1A-206ENST00000491429 MEN1O00255 615 aa10.87□□□□□ -0.67
SCN1A-206ENST00000491429 FBXO45P0C2W1 286 aa10.87□□□□□ -0.67
SCN1A-206ENST00000491429 ZNF837Q96EG3 531 aaPredicted RBP10.87□□□□□ -0.67
SCN1A-206ENST00000491429 GJD4Q96KN9 370 aaPredicted RBP10.86□□□□□ -0.67
SCN1A-206ENST00000491429 A0A1W2PRU2 124 aa10.85□□□□□ -0.67
SCN1A-206ENST00000491429 GPR25O00155 361 aa10.85□□□□□ -0.67
SCN1A-206ENST00000491429 CELA2BP08218 269 aaPredicted RBP10.85□□□□□ -0.67
SCN1A-206ENST00000491429 TMEM259Q4ZIN3 620 aa10.85□□□□□ -0.67
SCN1A-206ENST00000491429 PCMTD1Q96MG8 357 aaPredicted RBP10.85□□□□□ -0.67
SCN1A-206ENST00000491429 GPAT2Q6NUI2 795 aa10.84□□□□□ -0.67
SCN1A-206ENST00000491429 TRIM22Q8IYM9 498 aa10.84□□□□□ -0.67
SCN1A-206ENST00000491429 DNMT3AQ9Y6K1 912 aaPredicted RBP10.84□□□□□ -0.67
SCN1A-206ENST00000491429 MAP3K10Q02779 954 aa10.83□□□□□ -0.68
SCN1A-206ENST00000491429 DBN1Q16643 649 aa10.83□□□□□ -0.68
SCN1A-206ENST00000491429 RIPOR1Q6ZS17 1223 aa10.83□□□□□ -0.68
SCN1A-206ENST00000491429 GOPCQ9HD26 462 aa10.83□□□□□ -0.68
SCN1A-206ENST00000491429 GPC1P35052 558 aa10.82□□□□□ -0.68
SCN1A-206ENST00000491429 ERVK-9P63128 1117 aa10.82□□□□□ -0.68
SCN1A-206ENST00000491429 KANK3Q6NY19 840 aa10.82□□□□□ -0.68
SCN1A-206ENST00000491429 SCARF2Q96GP6 870 aaPredicted RBP10.82□□□□□ -0.68
SCN1A-206ENST00000491429 SCTRP47872 440 aa10.81□□□□□ -0.68
SCN1A-206ENST00000491429 POU4F2Q12837 409 aa10.81□□□□□ -0.68
SCN1A-206ENST00000491429 CC2D2BQ6DHV5 1058 aa10.81□□□□□ -0.68
SCN1A-206ENST00000491429 TRIM52Q96A61 297 aa10.81□□□□□ -0.68
SCN1A-206ENST00000491429 MBIPQ9NS73 344 aa10.81□□□□□ -0.68
SCN1A-206ENST00000491429 IGF1RP08069 1367 aa10.79□□□□□ -0.68
SCN1A-206ENST00000491429 SLC27A3Q5K4L6 730 aa10.79□□□□□ -0.68
SCN1A-206ENST00000491429 GTPBP3Q969Y2 492 aaKnown RBP10.79□□□□□ -0.68
SCN1A-206ENST00000491429 GMCL1Q96IK5 515 aa10.79□□□□□ -0.68
SCN1A-206ENST00000491429 GAS2L1Q99501 681 aaPredicted RBP10.79□□□□□ -0.68
SCN1A-206ENST00000491429 DYRK1BQ9Y463 629 aa10.79□□□□□ -0.68
SCN1A-206ENST00000491429 NLRP3Q96P20 1036 aa10.78□□□□□ -0.68
SCN1A-206ENST00000491429 NBPF10Q6P3W6 841 aaKnown RBP10.77□□□□□ -0.69
SCN1A-206ENST00000491429 FOXR1Q6PIV2 292 aa10.77□□□□□ -0.69
SCN1A-206ENST00000491429 NBPF15Q8N660 670 aa10.77□□□□□ -0.69
SCN1A-206ENST00000491429 IL27Q8NEV9 243 aa10.77□□□□□ -0.69
SCN1A-206ENST00000491429 GRIP2Q9C0E4 1043 aa10.77□□□□□ -0.69
SCN1A-206ENST00000491429 NR1H3Q13133 447 aa10.76□□□□□ -0.69
SCN1A-206ENST00000491429 CLN3Q13286 438 aa10.76□□□□□ -0.69
SCN1A-206ENST00000491429 RNF20Q5VTR2 975 aa10.76□□□□□ -0.69
SCN1A-206ENST00000491429 CYP2U1Q7Z449 544 aa10.76□□□□□ -0.69
SCN1A-206ENST00000491429 ENAMQ9NRM1 1142 aa10.76□□□□□ -0.69
SCN1A-206ENST00000491429 PCDHB11Q9Y5F2 797 aa10.76□□□□□ -0.69
SCN1A-206ENST00000491429 CNTNAP5Q8WYK1 1306 aa10.76□□□□□ -0.69
SCN1A-206ENST00000491429 GPR37L1O60883 481 aa10.75□□□□□ -0.69
SCN1A-206ENST00000491429 CCDC125Q86Z20 511 aa10.75□□□□□ -0.69
SCN1A-206ENST00000491429 ACDQ96AP0 544 aa10.75□□□□□ -0.69
SCN1A-206ENST00000491429 BCANQ96GW7 911 aa10.75□□□□□ -0.69
SCN1A-206ENST00000491429 OSBPL3Q9H4L5 887 aa10.75□□□□□ -0.69
SCN1A-206ENST00000491429 ARHGEF10LQ9HCE6 1279 aa10.75□□□□□ -0.69
SCN1A-206ENST00000491429 H7C1W4 665 aa10.74□□□□□ -0.69
SCN1A-206ENST00000491429 TRAK2O60296 914 aa10.74□□□□□ -0.69
SCN1A-206ENST00000491429 IGHA1P01876 353 aa10.74□□□□□ -0.69
SCN1A-206ENST00000491429 BCRP11274 1271 aa10.73□□□□□ -0.69
SCN1A-206ENST00000491429 RAB6BQ9NRW1 208 aa10.73□□□□□ -0.69
SCN1A-206ENST00000491429 SPATA31C2B4DYI2 1134 aa10.72□□□□□ -0.69
SCN1A-206ENST00000491429 FOXK2Q01167 660 aa10.72□□□□□ -0.69
SCN1A-206ENST00000491429 NEUROD2Q15784 382 aa10.72□□□□□ -0.69
SCN1A-206ENST00000491429 TRERF1Q96PN7 1200 aa10.72□□□□□ -0.69
SCN1A-206ENST00000491429 TIMMDC1Q9NPL8 285 aa10.72□□□□□ -0.69
SCN1A-206ENST00000491429 WASLO00401 505 aaPredicted RBP10.71□□□□□ -0.69
SCN1A-206ENST00000491429 MCCD1P59942 119 aaPredicted RBP10.71□□□□□ -0.69
SCN1A-206ENST00000491429 TAS1R3Q7RTX0 852 aa10.7□□□□□ -0.7
SCN1A-206ENST00000491429 MTMR14Q8NCE2 650 aa10.7□□□□□ -0.7
SCN1A-206ENST00000491429 NEDD1Q8NHV4 660 aa10.7□□□□□ -0.7
SCN1A-206ENST00000491429 NUCKS1Q9H1E3 243 aaKnown RBP10.7□□□□□ -0.7
SCN1A-206ENST00000491429 THBS1P07996 1170 aa10.69□□□□□ -0.7
SCN1A-206ENST00000491429 MX2P20592 715 aa10.69□□□□□ -0.7
SCN1A-206ENST00000491429 WDR44Q5JSH3 913 aa10.69□□□□□ -0.7
SCN1A-206ENST00000491429 DCAF5Q96JK2 942 aa10.69□□□□□ -0.7
SCN1A-206ENST00000491429 PHF20L1A8MW92 1017 aa10.68□□□□□ -0.7
SCN1A-206ENST00000491429 IL2RAP01589 272 aa10.68□□□□□ -0.7
SCN1A-206ENST00000491429 F11P03951 625 aa10.68□□□□□ -0.7
SCN1A-206ENST00000491429 PLA2G4EQ3MJ16 856 aa10.68□□□□□ -0.7
SCN1A-206ENST00000491429 ESF1Q9H501 851 aaKnown RBP10.68□□□□□ -0.7
SCN1A-206ENST00000491429 ITGB2P05107 769 aa10.67□□□□□ -0.7
SCN1A-206ENST00000491429 BEND7Q8N7W2 519 aaPredicted RBP10.67□□□□□ -0.7
SCN1A-206ENST00000491429 CNKSR1Q969H4 720 aa10.67□□□□□ -0.7
SCN1A-206ENST00000491429 CDCA7Q9BWT1 371 aaPredicted RBP10.67□□□□□ -0.7
SCN1A-206ENST00000491429 ZNF330Q9Y3S2 320 aaPredicted RBP10.67□□□□□ -0.7
SCN1A-206ENST00000491429 PHKA2P46019 1235 aa10.66□□□□□ -0.7
SCN1A-206ENST00000491429 CENPCQ03188 943 aa10.66□□□□□ -0.7
SCN1A-206ENST00000491429 ESYT1Q9BSJ8 1104 aa10.66□□□□□ -0.7
SCN1A-206ENST00000491429 GPAMQ9HCL2 828 aa10.66□□□□□ -0.7
SCN1A-206ENST00000491429 NDUFB9Q9Y6M9 179 aa10.66□□□□□ -0.7
SCN1A-206ENST00000491429 GNRH1P01148 92 aa10.65□□□□□ -0.7
SCN1A-206ENST00000491429 PODNQ7Z5L7 613 aa10.65□□□□□ -0.7
SCN1A-206ENST00000491429 BANK1Q8NDB2 785 aa10.65□□□□□ -0.7
SCN1A-206ENST00000491429 ZNF592Q92610 1267 aa10.65□□□□□ -0.7
SCN1A-206ENST00000491429 CCDC85AQ96PX6 553 aaPredicted RBP10.65□□□□□ -0.7
SCN1A-206ENST00000491429 SNRKQ9NRH2 765 aa10.65□□□□□ -0.7
SCN1A-206ENST00000491429 NSFL1CQ9UNZ2 370 aaKnown RBP10.64□□□□□ -0.71
SCN1A-206ENST00000491429 MSTNO14793 375 aa10.63□□□□□ -0.71
SCN1A-206ENST00000491429 OIP5O43482 229 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms