RNA–Protein interactions for RNA: ENST00000490081.5

HDAC1-210, Transcript of histone deacetylase 1, humanhuman

TSL 3

Gene HDAC1, Length 1,047 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-210ENST00000490081 MRS2Q9HD23 443 aa16.64■□□□□ 0.25
HDAC1-210ENST00000490081 USP35Q9P2H5 1018 aa16.64■□□□□ 0.25
HDAC1-210ENST00000490081 TATP17735 454 aaPredicted RBP16.63■□□□□ 0.25
HDAC1-210ENST00000490081 FAM98CQ17RN3 349 aaKnown RBP16.63■□□□□ 0.25
HDAC1-210ENST00000490081 AMOTQ4VCS5 1084 aa16.63■□□□□ 0.25
HDAC1-210ENST00000490081 SEPT12Q8IYM1 358 aa16.63■□□□□ 0.25
HDAC1-210ENST00000490081 RSPH6AQ9H0K4 717 aa16.63■□□□□ 0.25
HDAC1-210ENST00000490081 PKD1L3Q7Z443 1732 aa16.62■□□□□ 0.25
HDAC1-210ENST00000490081 EXOC5O00471 708 aa16.62■□□□□ 0.25
HDAC1-210ENST00000490081 AEBP1Q8IUX7 1158 aa16.62■□□□□ 0.25
HDAC1-210ENST00000490081 USHBP1Q8N6Y0 703 aa16.62■□□□□ 0.25
HDAC1-210ENST00000490081 MEGF6O75095 1541 aa16.61■□□□□ 0.25
HDAC1-210ENST00000490081 WDR43Q15061 677 aaKnown RBP eCLIP16.61■□□□□ 0.25
HDAC1-210ENST00000490081 PLEKHF1Q96S99 279 aa16.61■□□□□ 0.25
HDAC1-210ENST00000490081 ADAMTS8Q9UP79 889 aa16.61■□□□□ 0.25
HDAC1-210ENST00000490081 DDB1Q16531 1140 aa16.6■□□□□ 0.25
HDAC1-210ENST00000490081 PLEKHO1Q53GL0 409 aaPredicted RBP16.6■□□□□ 0.25
HDAC1-210ENST00000490081 ZCRB1Q8TBF4 217 aaKnown RBP16.6■□□□□ 0.25
HDAC1-210ENST00000490081 SPG7Q9UQ90 795 aa16.6■□□□□ 0.25
HDAC1-210ENST00000490081 HMOX1P09601 288 aa16.59■□□□□ 0.25
HDAC1-210ENST00000490081 BCL9O00512 1426 aa16.59■□□□□ 0.25
HDAC1-210ENST00000490081 TNS2Q63HR2 1409 aa16.59■□□□□ 0.25
HDAC1-210ENST00000490081 LRRC37A3O60309 1634 aa16.59■□□□□ 0.25
HDAC1-210ENST00000490081 SHANK3Q9BYB0 1731 aa16.57■□□□□ 0.24
HDAC1-210ENST00000490081 PRKAR2BP31323 418 aa16.57■□□□□ 0.24
HDAC1-210ENST00000490081 NKX1-1Q15270 411 aaPredicted RBP16.57■□□□□ 0.24
HDAC1-210ENST00000490081 NCBP3Q53F19 620 aaKnown RBP16.57■□□□□ 0.24
HDAC1-210ENST00000490081 KRT27Q7Z3Y8 459 aa16.57■□□□□ 0.24
HDAC1-210ENST00000490081 PCDH11XQ9BZA7 1347 aa16.56■□□□□ 0.24
HDAC1-210ENST00000490081 PCDH11YQ9BZA8 1340 aa16.56■□□□□ 0.24
HDAC1-210ENST00000490081 RUNDC1Q96C34 613 aa16.56■□□□□ 0.24
HDAC1-210ENST00000490081 NEFMP07197 916 aa16.55■□□□□ 0.24
HDAC1-210ENST00000490081 PDE3BQ13370 1112 aa16.55■□□□□ 0.24
HDAC1-210ENST00000490081 GAS2L2Q8NHY3 880 aa16.55■□□□□ 0.24
HDAC1-210ENST00000490081 PHACTR3Q96KR7 559 aa16.55■□□□□ 0.24
HDAC1-210ENST00000490081 CYP27B1O15528 508 aa16.54■□□□□ 0.24
HDAC1-210ENST00000490081 DEFB132Q7Z7B7 95 aa16.54■□□□□ 0.24
HDAC1-210ENST00000490081 IFNL2Q8IZJ0 200 aa16.54■□□□□ 0.24
HDAC1-210ENST00000490081 HTATSF1O43719 755 aaKnown RBP16.53■□□□□ 0.24
HDAC1-210ENST00000490081 HSP90AB1P08238 724 aaKnown RBP16.53■□□□□ 0.24
HDAC1-210ENST00000490081 MTHFSDQ2M296 383 aaKnown RBP16.53■□□□□ 0.24
HDAC1-210ENST00000490081 MARCH10Q8NA82 808 aaPredicted RBP16.53■□□□□ 0.24
HDAC1-210ENST00000490081 PHKG2P15735 406 aa16.52■□□□□ 0.24
HDAC1-210ENST00000490081 AKAP4Q5JQC9 854 aa16.52■□□□□ 0.24
HDAC1-210ENST00000490081 NGEFQ8N5V2 710 aa16.52■□□□□ 0.24
HDAC1-210ENST00000490081 MAPK8IP3Q9UPT6 1336 aa16.51■□□□□ 0.23
HDAC1-210ENST00000490081 A0A0G2JS52 829 aa16.51■□□□□ 0.23
HDAC1-210ENST00000490081 MYT1Q01538 1121 aa16.51■□□□□ 0.23
HDAC1-210ENST00000490081 FAM196AQ6ZSG2 479 aa16.51■□□□□ 0.23
HDAC1-210ENST00000490081 ADAMTS7Q9UKP4 1686 aa16.5■□□□□ 0.23
HDAC1-210ENST00000490081 NFE2L2Q16236 605 aa16.5■□□□□ 0.23
HDAC1-210ENST00000490081 ZNF530Q6P9A1 599 aaPredicted RBP16.5■□□□□ 0.23
HDAC1-210ENST00000490081 DCAF5Q96JK2 942 aa16.5■□□□□ 0.23
HDAC1-210ENST00000490081 DLG5Q8TDM6 1919 aa16.49■□□□□ 0.23
HDAC1-210ENST00000490081 C1orf141Q5JVX7 400 aa16.49■□□□□ 0.23
HDAC1-210ENST00000490081 FAM9BQ8IZU0 186 aa16.49■□□□□ 0.23
HDAC1-210ENST00000490081 DDX54Q8TDD1 881 aaKnown RBP16.49■□□□□ 0.23
HDAC1-210ENST00000490081 SBF2Q86WG5 1849 aa16.48■□□□□ 0.23
HDAC1-210ENST00000490081 GNAT3A8MTJ3 354 aa16.48■□□□□ 0.23
HDAC1-210ENST00000490081 TMPOP42166 694 aaKnown RBP16.48■□□□□ 0.23
HDAC1-210ENST00000490081 SCN11AQ9UI33 1791 aa16.48■□□□□ 0.23
HDAC1-210ENST00000490081 ERVV-2B6SEH9 535 aa16.47■□□□□ 0.23
HDAC1-210ENST00000490081 SF3B2Q13435 895 aaKnown RBP16.47■□□□□ 0.23
HDAC1-210ENST00000490081 MAP3K5Q99683 1374 aa16.47■□□□□ 0.23
HDAC1-210ENST00000490081 VIRMAQ69YN4 1812 aaKnown RBP16.47■□□□□ 0.23
HDAC1-210ENST00000490081 CCDC27Q2M243 656 aa16.46■□□□□ 0.23
HDAC1-210ENST00000490081 FAM182BQ5T319 152 aa16.46■□□□□ 0.23
HDAC1-210ENST00000490081 CEMIPQ8WUJ3 1361 aa16.46■□□□□ 0.23
HDAC1-210ENST00000490081 TNS1Q9HBL0 1735 aaKnown RBP16.45■□□□□ 0.22
HDAC1-210ENST00000490081 APAF1O14727 1248 aa16.45■□□□□ 0.22
HDAC1-210ENST00000490081 LMOD3Q0VAK6 560 aa16.45■□□□□ 0.22
HDAC1-210ENST00000490081 CCDC146Q8IYE0 955 aa16.45■□□□□ 0.22
HDAC1-210ENST00000490081 RIPK4P57078 832 aa16.44■□□□□ 0.22
HDAC1-210ENST00000490081 IL17REQ8NFR9 667 aa16.44■□□□□ 0.22
HDAC1-210ENST00000490081 ITGB4P16144 1822 aa16.43■□□□□ 0.22
HDAC1-210ENST00000490081 RNMTO43148 476 aaKnown RBP16.43■□□□□ 0.22
HDAC1-210ENST00000490081 RTF1Q92541 710 aaKnown RBP16.43■□□□□ 0.22
HDAC1-210ENST00000490081 KDM6AO15550 1401 aaPredicted RBP16.43■□□□□ 0.22
HDAC1-210ENST00000490081 KAT6BQ8WYB5 2073 aa16.42■□□□□ 0.22
HDAC1-210ENST00000490081 BAG6P46379 1132 aa16.42■□□□□ 0.22
HDAC1-210ENST00000490081 BCL11BQ9C0K0 894 aaPredicted RBP16.42■□□□□ 0.22
HDAC1-210ENST00000490081 TRIM35Q9UPQ4 493 aa16.42■□□□□ 0.22
HDAC1-210ENST00000490081 NHSQ6T4R5 1651 aa16.42■□□□□ 0.22
HDAC1-210ENST00000490081 MRC1P22897 1456 aa16.42■□□□□ 0.22
HDAC1-210ENST00000490081 MPRIPQ6WCQ1 1025 aa16.41■□□□□ 0.22
HDAC1-210ENST00000490081 LGR6Q9HBX8 967 aa16.41■□□□□ 0.22
HDAC1-210ENST00000490081 TOGARAM1Q9Y4F4 1720 aa16.41■□□□□ 0.22
HDAC1-210ENST00000490081 SRCAPQ6ZRS2 3230 aa16.41■□□□□ 0.22
HDAC1-210ENST00000490081 DOT1LQ8TEK3 1739 aa16.4■□□□□ 0.22
HDAC1-210ENST00000490081 EN1Q05925 392 aaPredicted RBP16.4■□□□□ 0.22
HDAC1-210ENST00000490081 BABAM1Q9NWV8 329 aa16.4■□□□□ 0.22
HDAC1-210ENST00000490081 SIPA1L3O60292 1781 aaPredicted RBP16.4■□□□□ 0.22
HDAC1-210ENST00000490081 PRIM1P49642 420 aaKnown RBP16.39■□□□□ 0.21
HDAC1-210ENST00000490081 SLC52A2Q9HAB3 445 aa16.39■□□□□ 0.21
HDAC1-210ENST00000490081 LRP5O75197 1615 aa16.38■□□□□ 0.21
HDAC1-210ENST00000490081 CABP4P57796 275 aa16.37■□□□□ 0.21
HDAC1-210ENST00000490081 CALD1Q05682 793 aaKnown RBP16.37■□□□□ 0.21
HDAC1-210ENST00000490081 WDR63Q8IWG1 891 aa16.37■□□□□ 0.21
HDAC1-210ENST00000490081 WWC1Q8IX03 1113 aa16.37■□□□□ 0.21
HDAC1-210ENST00000490081 CAMKK2Q96RR4 588 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms