RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 PLEKHG2Q9H7P9 1386 aa14.56□□□□□ -0.08
VPS13D-210ENST00000489961 PKD1L3Q7Z443 1732 aa14.55□□□□□ -0.08
VPS13D-210ENST00000489961 AEBP1Q8IUX7 1158 aa14.55□□□□□ -0.08
VPS13D-210ENST00000489961 HMOX1P09601 288 aa14.54□□□□□ -0.08
VPS13D-210ENST00000489961 FAM196AQ6ZSG2 479 aa14.54□□□□□ -0.08
VPS13D-210ENST00000489961 SPG7Q9UQ90 795 aa14.54□□□□□ -0.08
VPS13D-210ENST00000489961 SHANK3Q9BYB0 1731 aa14.54□□□□□ -0.08
VPS13D-210ENST00000489961 U2AF1L5P0DN76 240 aaPredicted RBP14.53□□□□□ -0.08
VPS13D-210ENST00000489961 U2AF1Q01081 240 aaKnown RBP eCLIP14.53□□□□□ -0.08
VPS13D-210ENST00000489961 FAM182BQ5T319 152 aa14.53□□□□□ -0.08
VPS13D-210ENST00000489961 MARCH10Q8NA82 808 aaPredicted RBP14.53□□□□□ -0.08
VPS13D-210ENST00000489961 DDX54Q8TDD1 881 aaKnown RBP14.53□□□□□ -0.08
VPS13D-210ENST00000489961 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.53□□□□□ -0.081e-6■■■□□ 19
VPS13D-210ENST00000489961 PCDH11XQ9BZA7 1347 aa14.52□□□□□ -0.08
VPS13D-210ENST00000489961 PCDH11YQ9BZA8 1340 aa14.52□□□□□ -0.08
VPS13D-210ENST00000489961 PLEKHO1Q53GL0 409 aaPredicted RBP14.52□□□□□ -0.09
VPS13D-210ENST00000489961 AMOTQ4VCS5 1084 aa14.51□□□□□ -0.09
VPS13D-210ENST00000489961 BCL9O00512 1426 aa14.49□□□□□ -0.09
VPS13D-210ENST00000489961 FCHSD2O94868 740 aa14.49□□□□□ -0.09
VPS13D-210ENST00000489961 WDR43Q15061 677 aaKnown RBP eCLIP14.49□□□□□ -0.09
VPS13D-210ENST00000489961 DIEXFQ68CQ4 756 aaKnown RBP14.49□□□□□ -0.09
VPS13D-210ENST00000489961 SBF2Q86WG5 1849 aa14.49□□□□□ -0.09
VPS13D-210ENST00000489961 SOCS7O14512 581 aa14.48□□□□□ -0.09
VPS13D-210ENST00000489961 NEFMP07197 916 aa14.48□□□□□ -0.09
VPS13D-210ENST00000489961 PRKAR2BP31323 418 aa14.48□□□□□ -0.09
VPS13D-210ENST00000489961 ZNF530Q6P9A1 599 aaPredicted RBP14.48□□□□□ -0.09
VPS13D-210ENST00000489961 IFNL2Q8IZJ0 200 aa14.48□□□□□ -0.09
VPS13D-210ENST00000489961 RSPH6AQ9H0K4 717 aa14.48□□□□□ -0.09
VPS13D-210ENST00000489961 PNNQ9H307 717 aaKnown RBP14.48□□□□□ -0.09
VPS13D-210ENST00000489961 CYP27B1O15528 508 aa14.47□□□□□ -0.09
VPS13D-210ENST00000489961 SF3B2Q13435 895 aaKnown RBP14.47□□□□□ -0.09
VPS13D-210ENST00000489961 C1orf141Q5JVX7 400 aa14.47□□□□□ -0.09
VPS13D-210ENST00000489961 CCDC125Q86Z20 511 aa14.47□□□□□ -0.09
VPS13D-210ENST00000489961 UPF1Q92900 1129 aaKnown RBP eCLIP14.47□□□□□ -0.09
VPS13D-210ENST00000489961 DOT1LQ8TEK3 1739 aa14.46□□□□□ -0.09
VPS13D-210ENST00000489961 KAT6BQ8WYB5 2073 aa14.46□□□□□ -0.09
VPS13D-210ENST00000489961 TRIM37O94972 964 aa14.46□□□□□ -0.09
VPS13D-210ENST00000489961 HSP90AB1P08238 724 aaKnown RBP14.46□□□□□ -0.09
VPS13D-210ENST00000489961 PHKG2P15735 406 aa14.46□□□□□ -0.09
VPS13D-210ENST00000489961 MRS2Q9HD23 443 aa14.46□□□□□ -0.09
VPS13D-210ENST00000489961 NHSQ6T4R5 1651 aa14.46□□□□□ -0.1
VPS13D-210ENST00000489961 NKX1-1Q15270 411 aaPredicted RBP14.45□□□□□ -0.1
VPS13D-210ENST00000489961 GAS2L2Q8NHY3 880 aa14.45□□□□□ -0.1
VPS13D-210ENST00000489961 TNS1Q9HBL0 1735 aaKnown RBP14.45□□□□□ -0.1
VPS13D-210ENST00000489961 MTHFSDQ2M296 383 aaKnown RBP14.44□□□□□ -0.1
VPS13D-210ENST00000489961 AKAP4Q5JQC9 854 aa14.44□□□□□ -0.1
VPS13D-210ENST00000489961 ACSBG1Q96GR2 724 aa14.44□□□□□ -0.1
VPS13D-210ENST00000489961 MAPK8IP3Q9UPT6 1336 aa14.43□□□□□ -0.1
VPS13D-210ENST00000489961 CCDC184Q52MB2 194 aa14.43□□□□□ -0.1
VPS13D-210ENST00000489961 BCL11BQ9C0K0 894 aaPredicted RBP14.43□□□□□ -0.1
VPS13D-210ENST00000489961 TOGARAM1Q9Y4F4 1720 aa14.42□□□□□ -0.1
VPS13D-210ENST00000489961 SYTL4Q96C24 671 aaPredicted RBP14.42□□□□□ -0.1
VPS13D-210ENST00000489961 DCAF5Q96JK2 942 aa14.42□□□□□ -0.1
VPS13D-210ENST00000489961 PHACTR3Q96KR7 559 aa14.42□□□□□ -0.1
VPS13D-210ENST00000489961 ADAMTS8Q9UP79 889 aa14.42□□□□□ -0.1
VPS13D-210ENST00000489961 ITGB4P16144 1822 aa14.41□□□□□ -0.1
VPS13D-210ENST00000489961 VIRMAQ69YN4 1812 aaKnown RBP14.41□□□□□ -0.1
VPS13D-210ENST00000489961 APBA3O96018 575 aa14.41□□□□□ -0.1
VPS13D-210ENST00000489961 BAG6P46379 1132 aa14.41□□□□□ -0.1
VPS13D-210ENST00000489961 PRIM1P49642 420 aaKnown RBP14.41□□□□□ -0.1
VPS13D-210ENST00000489961 PLEKHF1Q96S99 279 aa14.41□□□□□ -0.1
VPS13D-210ENST00000489961 SCN11AQ9UI33 1791 aa14.41□□□□□ -0.1
VPS13D-210ENST00000489961 BTAF1O14981 1849 aa14.41□□□□□ -0.1
VPS13D-210ENST00000489961 MAP3K5Q99683 1374 aa14.4□□□□□ -0.1
VPS13D-210ENST00000489961 KCNQ2O43526 872 aa14.4□□□□□ -0.1
VPS13D-210ENST00000489961 GNAT3A8MTJ3 354 aa14.39□□□□□ -0.11
VPS13D-210ENST00000489961 MPRIPQ6WCQ1 1025 aa14.39□□□□□ -0.11
VPS13D-210ENST00000489961 PNISRQ8TF01 805 aaKnown RBP14.39□□□□□ -0.11
VPS13D-210ENST00000489961 RUNDC1Q96C34 613 aa14.39□□□□□ -0.11
VPS13D-210ENST00000489961 KDM6AO15550 1401 aaPredicted RBP14.39□□□□□ -0.11
VPS13D-210ENST00000489961 EP400Q96L91 3159 aa14.38□□□□□ -0.11
VPS13D-210ENST00000489961 ERVV-2B6SEH9 535 aa14.38□□□□□ -0.11
VPS13D-210ENST00000489961 CCER2I3L3R5 266 aa14.38□□□□□ -0.11
VPS13D-210ENST00000489961 PTF1AQ7RTS3 328 aa14.38□□□□□ -0.11
VPS13D-210ENST00000489961 CCDC146Q8IYE0 955 aa14.38□□□□□ -0.11
VPS13D-210ENST00000489961 TMOD3Q9NYL9 352 aa14.38□□□□□ -0.11
VPS13D-210ENST00000489961 DLG5Q8TDM6 1919 aa14.38□□□□□ -0.11
VPS13D-210ENST00000489961 RGPD3A6NKT7 1758 aaPredicted RBP14.37□□□□□ -0.11
VPS13D-210ENST00000489961 RGPD4Q7Z3J3 1758 aa14.37□□□□□ -0.11
VPS13D-210ENST00000489961 ADAMTS7Q9UKP4 1686 aa14.37□□□□□ -0.11
VPS13D-210ENST00000489961 RNMTO43148 476 aaKnown RBP14.37□□□□□ -0.11
VPS13D-210ENST00000489961 NFE2L2Q16236 605 aa14.37□□□□□ -0.11
VPS13D-210ENST00000489961 DEFB132Q7Z7B7 95 aa14.37□□□□□ -0.11
VPS13D-210ENST00000489961 RTF1Q92541 710 aaKnown RBP14.37□□□□□ -0.11
VPS13D-210ENST00000489961 PLSCR1O15162 318 aa14.36□□□□□ -0.11
VPS13D-210ENST00000489961 CABP4P57796 275 aa14.36□□□□□ -0.11
VPS13D-210ENST00000489961 EN1Q05925 392 aaPredicted RBP14.36□□□□□ -0.11
VPS13D-210ENST00000489961 LGR6Q9HBX8 967 aa14.36□□□□□ -0.11
VPS13D-210ENST00000489961 HTATSF1O43719 755 aaKnown RBP14.35□□□□□ -0.11
VPS13D-210ENST00000489961 MIER1Q8N108 512 aa14.35□□□□□ -0.11
VPS13D-210ENST00000489961 PIGBQ92521 554 aa14.35□□□□□ -0.11
VPS13D-210ENST00000489961 MRC1P22897 1456 aa14.34□□□□□ -0.11
VPS13D-210ENST00000489961 TMPOP42166 694 aaKnown RBP14.34□□□□□ -0.11
VPS13D-210ENST00000489961 TEFQ10587 303 aa14.34□□□□□ -0.11
VPS13D-210ENST00000489961 FAM9BQ8IZU0 186 aa14.34□□□□□ -0.11
VPS13D-210ENST00000489961 RIPK4P57078 832 aa14.33□□□□□ -0.12
VPS13D-210ENST00000489961 LMOD3Q0VAK6 560 aa14.33□□□□□ -0.12
VPS13D-210ENST00000489961 EZH2Q15910 746 aaKnown RBP14.33□□□□□ -0.12
VPS13D-210ENST00000489961 NFATC2IPQ8NCF5 419 aa14.33□□□□□ -0.12
VPS13D-210ENST00000489961 IL17REQ8NFR9 667 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms