RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 NANOS1Q8WY41 292 aaKnown RBP8.37□□□□□ -1.07
XRN1-213ENST00000489241 ATP5J2-PTCD1G3V325 749 aa8.36□□□□□ -1.07
XRN1-213ENST00000489241 ITGA6P23229 1130 aa8.36□□□□□ -1.07
XRN1-213ENST00000489241 ERVK-9P63128 1117 aa8.36□□□□□ -1.07
XRN1-213ENST00000489241 CC2D2BQ6DHV5 1058 aa8.35□□□□□ -1.07
XRN1-213ENST00000489241 SENP3-EIF4A1A0A087X0R7 540 aa8.34□□□□□ -1.07
XRN1-213ENST00000489241 LYSMD3Q7Z3D4 306 aa8.34□□□□□ -1.07
XRN1-213ENST00000489241 HOMEZQ8IX15 550 aa8.34□□□□□ -1.07
XRN1-213ENST00000489241 GPR161Q8N6U8 529 aaKnown RBP8.34□□□□□ -1.07
XRN1-213ENST00000489241 RNF144AP50876 292 aaPredicted RBP8.33□□□□□ -1.08
XRN1-213ENST00000489241 KRT76Q01546 638 aa8.33□□□□□ -1.08
XRN1-213ENST00000489241 CYP2U1Q7Z449 544 aa8.33□□□□□ -1.08
XRN1-213ENST00000489241 CDC14CA4D256 554 aa8.32□□□□□ -1.08
XRN1-213ENST00000489241 GPC1P35052 558 aa8.32□□□□□ -1.08
XRN1-213ENST00000489241 COL25A1Q9BXS0 654 aaPredicted RBP8.32□□□□□ -1.08
XRN1-213ENST00000489241 PCDHB11Q9Y5F2 797 aa8.32□□□□□ -1.08
XRN1-213ENST00000489241 SCTRP47872 440 aa8.31□□□□□ -1.08
XRN1-213ENST00000489241 SV2AQ7L0J3 742 aa8.31□□□□□ -1.08
XRN1-213ENST00000489241 CNTNAP3BQ96NU0 1288 aa8.31□□□□□ -1.08
XRN1-213ENST00000489241 CNTNAP3Q9BZ76 1288 aa8.31□□□□□ -1.08
XRN1-213ENST00000489241 PRM3Q9NNZ6 103 aa8.31□□□□□ -1.08
XRN1-213ENST00000489241 TBC1D2BQ9UPU7 963 aa8.31□□□□□ -1.08
XRN1-213ENST00000489241 A0A1W2PRU2 124 aa8.3□□□□□ -1.08
XRN1-213ENST00000489241 MEN1O00255 615 aa8.3□□□□□ -1.08
XRN1-213ENST00000489241 MCM6Q14566 821 aa8.3□□□□□ -1.08
XRN1-213ENST00000489241 VWA5B2Q8N398 1253 aa8.3□□□□□ -1.08
XRN1-213ENST00000489241 UBTFP17480 764 aaKnown RBP8.29□□□□□ -1.08
XRN1-213ENST00000489241 PRICKLE2Q7Z3G6 844 aa8.29□□□□□ -1.08
XRN1-213ENST00000489241 ZMYND15Q9H091 742 aa8.29□□□□□ -1.08
XRN1-213ENST00000489241 OSBPL3Q9H4L5 887 aa8.29□□□□□ -1.08
XRN1-213ENST00000489241 RAD21O60216 631 aa8.28□□□□□ -1.08
XRN1-213ENST00000489241 TRAK2O60296 914 aa8.28□□□□□ -1.08
XRN1-213ENST00000489241 CLN3Q13286 438 aa8.28□□□□□ -1.08
XRN1-213ENST00000489241 RNFT1Q5M7Z0 435 aa8.28□□□□□ -1.08
XRN1-213ENST00000489241 NLRP3Q96P20 1036 aa8.28□□□□□ -1.08
XRN1-213ENST00000489241 ESF1Q9H501 851 aaKnown RBP8.28□□□□□ -1.08
XRN1-213ENST00000489241 RHOQP17081 205 aa8.27□□□□□ -1.09
XRN1-213ENST00000489241 ARHGEF10LQ9HCE6 1279 aa8.27□□□□□ -1.09
XRN1-213ENST00000489241 CEP126Q9P2H0 1117 aa8.27□□□□□ -1.09
XRN1-213ENST00000489241 EIF4G2P78344 907 aaKnown RBP eCLIP8.26□□□□□ -1.09
XRN1-213ENST00000489241 SLC27A3Q5K4L6 730 aa8.26□□□□□ -1.09
XRN1-213ENST00000489241 MYCP01106 439 aaPredicted RBP8.25□□□□□ -1.09
XRN1-213ENST00000489241 IRF5Q13568 498 aa8.25□□□□□ -1.09
XRN1-213ENST00000489241 CCDC85AQ96PX6 553 aaPredicted RBP8.25□□□□□ -1.09
XRN1-213ENST00000489241 CUEDC1Q9NWM3 386 aaPredicted RBP8.25□□□□□ -1.09
XRN1-213ENST00000489241 GNRH1P01148 92 aa8.24□□□□□ -1.09
XRN1-213ENST00000489241 SLURP2P0DP57 97 aa8.24□□□□□ -1.09
XRN1-213ENST00000489241 GMCL1Q96IK5 515 aa8.24□□□□□ -1.09
XRN1-213ENST00000489241 GRIP2Q9C0E4 1043 aa8.24□□□□□ -1.09
XRN1-213ENST00000489241 SPATA31C2B4DYI2 1134 aa8.23□□□□□ -1.09
XRN1-213ENST00000489241 WWC1Q8IX03 1113 aa8.23□□□□□ -1.09
XRN1-213ENST00000489241 TRIM22Q8IYM9 498 aa8.23□□□□□ -1.09
XRN1-213ENST00000489241 ZNF837Q96EG3 531 aaPredicted RBP8.23□□□□□ -1.09
XRN1-213ENST00000489241 RAB6BQ9NRW1 208 aa8.23□□□□□ -1.09
XRN1-213ENST00000489241 DYRK1BQ9Y463 629 aa8.23□□□□□ -1.09
XRN1-213ENST00000489241 A6NJR5 290 aa8.22□□□□□ -1.09
XRN1-213ENST00000489241 POU4F2Q12837 409 aa8.22□□□□□ -1.09
XRN1-213ENST00000489241 WDR44Q5JSH3 913 aa8.22□□□□□ -1.09
XRN1-213ENST00000489241 ZNF385CQ66K41 422 aaPredicted RBP8.22□□□□□ -1.09
XRN1-213ENST00000489241 NBPF10Q6P3W6 841 aaKnown RBP8.22□□□□□ -1.09
XRN1-213ENST00000489241 SVOPQ8N4V2 548 aa8.22□□□□□ -1.09
XRN1-213ENST00000489241 NBPF15Q8N660 670 aa8.22□□□□□ -1.09
XRN1-213ENST00000489241 ESYT1Q9BSJ8 1104 aa8.22□□□□□ -1.09
XRN1-213ENST00000489241 CDCA7Q9BWT1 371 aaPredicted RBP8.22□□□□□ -1.09
XRN1-213ENST00000489241 GDPD2Q9HCC8 539 aa8.22□□□□□ -1.09
XRN1-213ENST00000489241 DOLKQ9UPQ8 538 aa8.22□□□□□ -1.09
XRN1-213ENST00000489241 IL2RAP01589 272 aa8.21□□□□□ -1.1
XRN1-213ENST00000489241 VAC14Q08AM6 782 aa8.21□□□□□ -1.1
XRN1-213ENST00000489241 SLFNL1Q499Z3 407 aa8.21□□□□□ -1.1
XRN1-213ENST00000489241 RIPOR1Q6ZS17 1223 aa8.21□□□□□ -1.1
XRN1-213ENST00000489241 RNF135Q8IUD6 432 aa8.21□□□□□ -1.1
XRN1-213ENST00000489241 CNKSR1Q969H4 720 aa8.21□□□□□ -1.1
XRN1-213ENST00000489241 H7C1W4 665 aa8.2□□□□□ -1.1
XRN1-213ENST00000489241 WASLO00401 505 aaPredicted RBP8.2□□□□□ -1.1
XRN1-213ENST00000489241 ABL2P42684 1182 aa8.2□□□□□ -1.1
XRN1-213ENST00000489241 GAS6Q14393 721 aa8.2□□□□□ -1.1
XRN1-213ENST00000489241 WASHC4Q2M389 1173 aa8.2□□□□□ -1.1
XRN1-213ENST00000489241 TAS1R3Q7RTX0 852 aa8.2□□□□□ -1.1
XRN1-213ENST00000489241 PHTF2Q8N3S3 785 aa8.2□□□□□ -1.1
XRN1-213ENST00000489241 COG6Q9Y2V7 657 aa8.2□□□□□ -1.1
XRN1-213ENST00000489241 ADAMTS2O95450 1211 aa8.19□□□□□ -1.1
XRN1-213ENST00000489241 SRSF11Q05519 484 aaKnown RBP8.19□□□□□ -1.1
XRN1-213ENST00000489241 ESCO1Q5FWF5 840 aa8.19□□□□□ -1.1
XRN1-213ENST00000489241 FOXR1Q6PIV2 292 aa8.19□□□□□ -1.1
XRN1-213ENST00000489241 CLUAP1Q96AJ1 413 aa8.19□□□□□ -1.1
XRN1-213ENST00000489241 GAS2L1Q99501 681 aaPredicted RBP8.19□□□□□ -1.1
XRN1-213ENST00000489241 TIMMDC1Q9NPL8 285 aa8.19□□□□□ -1.1
XRN1-213ENST00000489241 RNF225M0QZC1 329 aaPredicted RBP8.18□□□□□ -1.1
XRN1-213ENST00000489241 USP4Q13107 963 aa8.18□□□□□ -1.1
XRN1-213ENST00000489241 DBN1Q16643 649 aa8.18□□□□□ -1.1
XRN1-213ENST00000489241 WHAMMQ8TF30 809 aa8.18□□□□□ -1.1
XRN1-213ENST00000489241 MBIPQ9NS73 344 aa8.18□□□□□ -1.1
XRN1-213ENST00000489241 ADAMTS8Q9UP79 889 aa8.18□□□□□ -1.1
XRN1-213ENST00000489241 HRH3Q9Y5N1 445 aa8.18□□□□□ -1.1
XRN1-213ENST00000489241 CENPCQ03188 943 aa8.17□□□□□ -1.1
XRN1-213ENST00000489241 KCNMA1Q12791 1236 aa8.17□□□□□ -1.1
XRN1-213ENST00000489241 SIRT1Q96EB6 747 aa8.17□□□□□ -1.1
XRN1-213ENST00000489241 XAGE2Q96GT9 111 aa8.17□□□□□ -1.1
XRN1-213ENST00000489241 POM121Q96HA1 1249 aa8.17□□□□□ -1.1
XRN1-213ENST00000489241 ZSCAN10Q96SZ4 725 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms