RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 TXNRD1Q16881 649 aa31.81■■■□□ 2.68
COL9A3-213ENST00000489045 USHBP1Q8N6Y0 703 aa31.81■■■□□ 2.68
COL9A3-213ENST00000489045 EMILIN1Q9Y6C2 1016 aa31.81■■■□□ 2.68
COL9A3-213ENST00000489045 CASZ1Q86V15 1759 aa31.79■■■□□ 2.68
COL9A3-213ENST00000489045 ZCRB1Q8TBF4 217 aaKnown RBP31.77■■■□□ 2.68
COL9A3-213ENST00000489045 PPM1GO15355 546 aaPredicted RBP31.73■■■□□ 2.67
COL9A3-213ENST00000489045 RAPGEF4Q8WZA2 1011 aa31.73■■■□□ 2.67
COL9A3-213ENST00000489045 PAPPAQ13219 1627 aa31.73■■■□□ 2.67
COL9A3-213ENST00000489045 PANK3Q9H999 370 aa31.71■■■□□ 2.67
COL9A3-213ENST00000489045 TATP17735 454 aaPredicted RBP31.69■■■□□ 2.66
COL9A3-213ENST00000489045 STK32BQ9NY57 414 aa31.69■■■□□ 2.66
COL9A3-213ENST00000489045 PKD1L3Q7Z443 1732 aa31.68■■■□□ 2.66
COL9A3-213ENST00000489045 WASHC2AQ641Q2 1341 aa31.68■■■□□ 2.66
COL9A3-213ENST00000489045 SYTL4Q96C24 671 aaPredicted RBP31.67■■■□□ 2.66
COL9A3-213ENST00000489045 SPON1Q9HCB6 807 aa31.67■■■□□ 2.66
COL9A3-213ENST00000489045 POLKQ9UBT6 870 aa31.67■■■□□ 2.66
COL9A3-213ENST00000489045 NCAPD2Q15021 1401 aa31.66■■■□□ 2.66
COL9A3-213ENST00000489045 TNNT2P45379 298 aaPredicted RBP31.66■■■□□ 2.66
COL9A3-213ENST00000489045 PRIM1P49642 420 aaKnown RBP31.66■■■□□ 2.66
COL9A3-213ENST00000489045 SLC15A2Q16348 729 aa31.66■■■□□ 2.66
COL9A3-213ENST00000489045 LY75O60449 1722 aa31.66■■■□□ 2.66
COL9A3-213ENST00000489045 PDGFDQ9GZP0 370 aaPredicted RBP31.65■■■□□ 2.66
COL9A3-213ENST00000489045 NSD2O96028 1365 aa31.65■■■□□ 2.66
COL9A3-213ENST00000489045 PCDH11XQ9BZA7 1347 aa31.62■■■□□ 2.65
COL9A3-213ENST00000489045 PCDH11YQ9BZA8 1340 aa31.62■■■□□ 2.65
COL9A3-213ENST00000489045 LRRC4BQ9NT99 713 aa31.61■■■□□ 2.65
COL9A3-213ENST00000489045 TOGARAM1Q9Y4F4 1720 aa31.6■■■□□ 2.65
COL9A3-213ENST00000489045 EYA1Q99502 592 aa31.58■■■□□ 2.65
COL9A3-213ENST00000489045 PPP1R1BQ9UD71 204 aaPredicted RBP31.58■■■□□ 2.65
COL9A3-213ENST00000489045 KIF7Q2M1P5 1343 aa31.57■■■□□ 2.64
COL9A3-213ENST00000489045 ITGB4P16144 1822 aa31.57■■■□□ 2.64
COL9A3-213ENST00000489045 ZBTB7AO95365 584 aa31.57■■■□□ 2.64
COL9A3-213ENST00000489045 QSER1Q2KHR3 1735 aa31.57■■■□□ 2.64
COL9A3-213ENST00000489045 SLC27A3Q5K4L6 730 aa31.56■■■□□ 2.64
COL9A3-213ENST00000489045 TUBGCP6Q96RT7 1819 aa31.55■■■□□ 2.64
COL9A3-213ENST00000489045 CYP27B1O15528 508 aa31.55■■■□□ 2.64
COL9A3-213ENST00000489045 ZNF827Q17R98 1081 aa31.55■■■□□ 2.64
COL9A3-213ENST00000489045 EIF4A2Q14240 407 aaKnown RBP31.54■■■□□ 2.64
COL9A3-213ENST00000489045 KNSTRNQ9Y448 316 aa31.53■■■□□ 2.64
COL9A3-213ENST00000489045 MORC1Q86VD1 984 aa31.52■■■□□ 2.64
COL9A3-213ENST00000489045 KCNQ4P56696 695 aa31.51■■■□□ 2.63
COL9A3-213ENST00000489045 AKT1S1Q96B36 256 aa31.5■■■□□ 2.63
COL9A3-213ENST00000489045 ATF5Q9Y2D1 282 aaPredicted RBP31.5■■■□□ 2.63
COL9A3-213ENST00000489045 SPG7Q9UQ90 795 aa31.49■■■□□ 2.63
COL9A3-213ENST00000489045 PTGER2P43116 358 aa31.47■■■□□ 2.63
COL9A3-213ENST00000489045 MTFR1LQ9H019 292 aa31.47■■■□□ 2.63
COL9A3-213ENST00000489045 C5P01031 1676 aa31.47■■■□□ 2.63
COL9A3-213ENST00000489045 CCNL1Q9UK58 526 aaPredicted RBP31.46■■■□□ 2.63
COL9A3-213ENST00000489045 IGSF1Q8N6C5 1336 aa31.46■■■□□ 2.63
COL9A3-213ENST00000489045 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.45■■■□□ 2.63
COL9A3-213ENST00000489045 AMER1Q5JTC6 1135 aaPredicted RBP31.44■■■□□ 2.62
COL9A3-213ENST00000489045 MPRIPQ6WCQ1 1025 aa31.44■■■□□ 2.62
COL9A3-213ENST00000489045 TAF1LQ8IZX4 1826 aa31.44■■■□□ 2.62
COL9A3-213ENST00000489045 NKX1-1Q15270 411 aaPredicted RBP31.43■■■□□ 2.62
COL9A3-213ENST00000489045 PLEKHG2Q9H7P9 1386 aa31.42■■■□□ 2.62
COL9A3-213ENST00000489045 PALLDQ8WX93 1383 aa31.41■■■□□ 2.62
COL9A3-213ENST00000489045 SGIP1Q9BQI5 828 aa31.4■■■□□ 2.62
COL9A3-213ENST00000489045 PNPLA7Q6ZV29 1317 aa31.4■■■□□ 2.62
COL9A3-213ENST00000489045 TFCP2L1Q9NZI6 479 aa31.39■■■□□ 2.62
COL9A3-213ENST00000489045 PHKG2P15735 406 aa31.38■■■□□ 2.61
COL9A3-213ENST00000489045 IFNL2Q8IZJ0 200 aa31.38■■■□□ 2.61
COL9A3-213ENST00000489045 COL24A1Q17RW2 1714 aa31.38■■■□□ 2.61
COL9A3-213ENST00000489045 PIGBQ92521 554 aa31.36■■■□□ 2.61
COL9A3-213ENST00000489045 PER1O15534 1290 aaPredicted RBP31.35■■■□□ 2.61
COL9A3-213ENST00000489045 SMARCC1Q92922 1105 aaPredicted RBP31.34■■■□□ 2.61
COL9A3-213ENST00000489045 SLC16A10Q8TF71 515 aa31.33■■■□□ 2.61
COL9A3-213ENST00000489045 AEBP1Q8IUX7 1158 aa31.32■■■□□ 2.6
COL9A3-213ENST00000489045 TMOD3Q9NYL9 352 aa31.32■■■□□ 2.6
COL9A3-213ENST00000489045 C4BP0C0L5 1744 aa31.32■■■□□ 2.6
COL9A3-213ENST00000489045 CC2D1BQ5T0F9 858 aaKnown RBP31.3■■■□□ 2.6
COL9A3-213ENST00000489045 ARXQ96QS3 562 aa31.3■■■□□ 2.6
COL9A3-213ENST00000489045 FHDC1Q9C0D6 1143 aaPredicted RBP31.3■■■□□ 2.6
COL9A3-213ENST00000489045 IL13P35225 146 aa31.29■■■□□ 2.6
COL9A3-213ENST00000489045 PLEKHO1Q53GL0 409 aaPredicted RBP31.29■■■□□ 2.6
COL9A3-213ENST00000489045 KDRP35968 1356 aa31.27■■■□□ 2.6
COL9A3-213ENST00000489045 HMGB2P26583 209 aaKnown RBP31.26■■■□□ 2.59
COL9A3-213ENST00000489045 MTHFSP49914 203 aa31.26■■■□□ 2.59
COL9A3-213ENST00000489045 SULT6B1Q6IMI4 303 aa31.26■■■□□ 2.59
COL9A3-213ENST00000489045 ZNF530Q6P9A1 599 aaPredicted RBP31.26■■■□□ 2.59
COL9A3-213ENST00000489045 SYT17Q9BSW7 474 aa31.26■■■□□ 2.59
COL9A3-213ENST00000489045 UBR3Q6ZT12 1888 aa31.26■■■□□ 2.59
COL9A3-213ENST00000489045 DCAF8L1A6NGE4 600 aa31.25■■■□□ 2.59
COL9A3-213ENST00000489045 MSH5O43196 834 aa31.25■■■□□ 2.59
COL9A3-213ENST00000489045 AMOTQ4VCS5 1084 aa31.25■■■□□ 2.59
COL9A3-213ENST00000489045 COL23A1Q86Y22 540 aaPredicted RBP31.25■■■□□ 2.59
COL9A3-213ENST00000489045 HSP90AB1P08238 724 aaKnown RBP31.24■■■□□ 2.59
COL9A3-213ENST00000489045 ASAP1Q9ULH1 1129 aa31.24■■■□□ 2.59
COL9A3-213ENST00000489045 KDM6AO15550 1401 aaPredicted RBP31.24■■■□□ 2.59
COL9A3-213ENST00000489045 NPC1L1Q9UHC9 1359 aa31.23■■■□□ 2.59
COL9A3-213ENST00000489045 POLD1P28340 1107 aa31.23■■■□□ 2.59
COL9A3-213ENST00000489045 LOC102724428A0A0B4J2F2 783 aa31.22■■■□□ 2.59
COL9A3-213ENST00000489045 SIK1P57059 783 aa31.22■■■□□ 2.59
COL9A3-213ENST00000489045 DCAF5Q96JK2 942 aa31.22■■■□□ 2.59
COL9A3-213ENST00000489045 MAP3K5Q99683 1374 aa31.21■■■□□ 2.59
COL9A3-213ENST00000489045 ERVV-2B6SEH9 535 aa31.2■■■□□ 2.59
COL9A3-213ENST00000489045 CNGB1Q14028 1251 aaPredicted RBP31.2■■■□□ 2.59
COL9A3-213ENST00000489045 ATG3Q9NT62 314 aa31.2■■■□□ 2.59
COL9A3-213ENST00000489045 AK7Q96M32 723 aa31.19■■■□□ 2.58
COL9A3-213ENST00000489045 SCN11AQ9UI33 1791 aa31.19■■■□□ 2.58
COL9A3-213ENST00000489045 C1orf141Q5JVX7 400 aa31.18■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms