RNA–Protein interactions for RNA: ENST00000487565.5

GARNL3-218, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-218	ENST00000487565	COPS2	P61201	443 aa		10.9	□□□□□ -0.66
GARNL3-218	ENST00000487565	PHOX2B	Q99453	314 aa		10.9	□□□□□ -0.66
GARNL3-218	ENST00000487565	DAXX	Q9UER7	740 aa	Predicted RBP	10.9	□□□□□ -0.66
GARNL3-218	ENST00000487565	SETD1B	Q9UPS6	1966 aa	Known RBP	10.9	□□□□□ -0.66
GARNL3-218	ENST00000487565	PCDHB3	Q9Y5E6	796 aa		10.89	□□□□□ -0.67
GARNL3-218	ENST00000487565	EID1	Q9Y6B2	187 aa		10.89	□□□□□ -0.67
GARNL3-218	ENST00000487565	SETBP1	Q9Y6X0	1596 aa		10.89	□□□□□ -0.67
GARNL3-218	ENST00000487565	ADGRF5	Q8IZF2	1346 aa		10.88	□□□□□ -0.67
GARNL3-218	ENST00000487565	TRPM1	Q7Z4N2	1603 aa		10.88	□□□□□ -0.67
GARNL3-218	ENST00000487565	IRF6	O14896	467 aa		10.88	□□□□□ -0.67
GARNL3-218	ENST00000487565	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.88	□□□□□ -0.67
GARNL3-218	ENST00000487565	ZNF516	Q92618	1163 aa		10.88	□□□□□ -0.67
GARNL3-218	ENST00000487565	PLEKHG1	Q9ULL1	1385 aa		10.88	□□□□□ -0.67
GARNL3-218	ENST00000487565	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.87	□□□□□ -0.67
GARNL3-218	ENST00000487565	POLR1A	O95602	1720 aa	Predicted RBP	10.87	□□□□□ -0.67
GARNL3-218	ENST00000487565	RDH13	Q8NBN7	331 aa		10.87	□□□□□ -0.67
GARNL3-218	ENST00000487565	KIAA1210	Q9ULL0	1709 aa		10.87	□□□□□ -0.67
GARNL3-218	ENST00000487565	DIP2A	Q14689	1571 aa		10.86	□□□□□ -0.67
GARNL3-218	ENST00000487565	IQGAP1	P46940	1657 aa		10.86	□□□□□ -0.67
GARNL3-218	ENST00000487565	DDX11L8	A8MPP1	907 aa		10.86	□□□□□ -0.67
GARNL3-218	ENST00000487565	ROCK2	O75116	1388 aa	Known RBP	10.86	□□□□□ -0.67
GARNL3-218	ENST00000487565	NRXN3	Q9Y4C0	1643 aa		10.85	□□□□□ -0.67
GARNL3-218	ENST00000487565	ACTN4	O43707	911 aa	Known RBP	10.85	□□□□□ -0.67
GARNL3-218	ENST00000487565	NBPF8	Q3BBV2	869 aa		10.85	□□□□□ -0.67
GARNL3-218	ENST00000487565	TXNDC2	Q86VQ3	553 aa		10.85	□□□□□ -0.67
GARNL3-218	ENST00000487565	NPHP4	O75161	1426 aa	Predicted RBP	10.84	□□□□□ -0.67
GARNL3-218	ENST00000487565	ASXL1	Q8IXJ9	1541 aa		10.84	□□□□□ -0.67
GARNL3-218	ENST00000487565	SLC24A1	O60721	1099 aa		10.84	□□□□□ -0.67
GARNL3-218	ENST00000487565	BLOC1S3	Q6QNY0	202 aa		10.84	□□□□□ -0.67
GARNL3-218	ENST00000487565	ANKLE2	Q86XL3	938 aa		10.84	□□□□□ -0.67
GARNL3-218	ENST00000487565	CCDC102A	Q96A19	550 aa		10.84	□□□□□ -0.67
GARNL3-218	ENST00000487565	BCAN	Q96GW7	911 aa		10.84	□□□□□ -0.67
GARNL3-218	ENST00000487565	GPRASP1	Q5JY77	1395 aa		10.84	□□□□□ -0.67
GARNL3-218	ENST00000487565	ALK	Q9UM73	1620 aa		10.84	□□□□□ -0.67
GARNL3-218	ENST00000487565	RGS20	O76081	388 aa		10.83	□□□□□ -0.68
GARNL3-218	ENST00000487565	LTK	P29376	864 aa		10.83	□□□□□ -0.68
GARNL3-218	ENST00000487565	HSPA2	P54652	639 aa		10.83	□□□□□ -0.68
GARNL3-218	ENST00000487565	SULF1	Q8IWU6	871 aa		10.83	□□□□□ -0.68
GARNL3-218	ENST00000487565	KRI1	Q8N9T8	703 aa	Known RBP	10.83	□□□□□ -0.68
GARNL3-218	ENST00000487565	ADGRB1	O14514	1584 aa		10.82	□□□□□ -0.68
GARNL3-218	ENST00000487565	MED14	O60244	1454 aa		10.82	□□□□□ -0.68
GARNL3-218	ENST00000487565	SETD1A	O15047	1707 aa	Known RBP	10.82	□□□□□ -0.68
GARNL3-218	ENST00000487565	ZPR1	O75312	459 aa		10.82	□□□□□ -0.68
GARNL3-218	ENST00000487565	ADAMTS13	Q76LX8	1427 aa		10.82	□□□□□ -0.68
GARNL3-218	ENST00000487565	CFAP70	Q5T0N1	1121 aa		10.81	□□□□□ -0.68
GARNL3-218	ENST00000487565	NKX2-3	Q8TAU0	364 aa		10.81	□□□□□ -0.68
GARNL3-218	ENST00000487565	ZC3H15	Q8WU90	426 aa	Known RBP	10.81	□□□□□ -0.68
GARNL3-218	ENST00000487565	CARD11	Q9BXL7	1154 aa		10.81	□□□□□ -0.68
GARNL3-218	ENST00000487565	C14orf93	Q9H972	538 aa	Known RBP	10.81	□□□□□ -0.68
GARNL3-218	ENST00000487565	EIF3A	Q14152	1382 aa	Known RBP	10.8	□□□□□ -0.68
GARNL3-218	ENST00000487565	MDM2	Q00987	491 aa	Predicted RBP	10.8	□□□□□ -0.68
GARNL3-218	ENST00000487565	USP47	Q96K76	1375 aa		10.79	□□□□□ -0.68
GARNL3-218	ENST00000487565	BARGIN	Q6ZT62	677 aa		10.79	□□□□□ -0.68
GARNL3-218	ENST00000487565	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.78	□□□□□ -0.68
GARNL3-218	ENST00000487565	ZMYND10	O75800	440 aa		10.78	□□□□□ -0.68
GARNL3-218	ENST00000487565	NBPF1	Q3BBV0	1214 aa		10.78	□□□□□ -0.68
GARNL3-218	ENST00000487565	MET	P08581	1390 aa		10.77	□□□□□ -0.68
GARNL3-218	ENST00000487565	LRPPRC	P42704	1394 aa	Known RBP	10.77	□□□□□ -0.68
GARNL3-218	ENST00000487565	NR1I2	O75469	434 aa		10.77	□□□□□ -0.69
GARNL3-218	ENST00000487565	PUS10	Q3MIT2	529 aa	Known RBP	10.77	□□□□□ -0.69
GARNL3-218	ENST00000487565	PPP1R18	Q6NYC8	613 aa		10.77	□□□□□ -0.69
GARNL3-218	ENST00000487565	SLC26A8	Q96RN1	970 aa		10.77	□□□□□ -0.69
GARNL3-218	ENST00000487565	KNDC1	Q76NI1	1749 aa		10.77	□□□□□ -0.69
GARNL3-218	ENST00000487565	CPS1	P31327	1500 aa		10.77	□□□□□ -0.69
GARNL3-218	ENST00000487565	PIK3R4	Q99570	1358 aa		10.77	□□□□□ -0.69
GARNL3-218	ENST00000487565	XRN1	Q8IZH2	1706 aa	Known RBP	10.76	□□□□□ -0.69
GARNL3-218	ENST00000487565	DLC1	Q96QB1	1528 aa		10.76	□□□□□ -0.69
GARNL3-218	ENST00000487565	TLL1	O43897	1013 aa		10.76	□□□□□ -0.69
GARNL3-218	ENST00000487565	GCGR	P47871	477 aa		10.76	□□□□□ -0.69
GARNL3-218	ENST00000487565	TBX22	Q9Y458	520 aa		10.76	□□□□□ -0.69
GARNL3-218	ENST00000487565	NWD1	Q149M9	1564 aa		10.76	□□□□□ -0.69
GARNL3-218	ENST00000487565	TECPR2	O15040	1411 aa		10.75	□□□□□ -0.69
GARNL3-218	ENST00000487565	PTCH1	Q13635	1447 aa		10.75	□□□□□ -0.69
GARNL3-218	ENST00000487565	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.75	□□□□□ -0.69
GARNL3-218	ENST00000487565	STRC	Q7RTU9	1775 aa		10.75	□□□□□ -0.69
GARNL3-218	ENST00000487565	GGCX	P38435	758 aa		10.75	□□□□□ -0.69
GARNL3-218	ENST00000487565	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.75	□□□□□ -0.69
GARNL3-218	ENST00000487565	TMEM132E	Q6IEE7	984 aa		10.75	□□□□□ -0.69
GARNL3-218	ENST00000487565	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.75	□□□□□ -0.69
GARNL3-218	ENST00000487565	FUT2	Q10981	343 aa		10.74	□□□□□ -0.69
GARNL3-218	ENST00000487565	HSPA5	P11021	654 aa	Known RBP	10.73	□□□□□ -0.69
GARNL3-218	ENST00000487565	CLCN1	P35523	988 aa		10.73	□□□□□ -0.69
GARNL3-218	ENST00000487565	GPCPD1	Q9NPB8	672 aa		10.73	□□□□□ -0.69
GARNL3-218	ENST00000487565	STK26	Q9P289	416 aa		10.73	□□□□□ -0.69
GARNL3-218	ENST00000487565	ABCC11	Q96J66	1382 aa		10.73	□□□□□ -0.69
GARNL3-218	ENST00000487565	PTPRU	Q92729	1446 aa		10.73	□□□□□ -0.69
GARNL3-218	ENST00000487565	NKTR	P30414	1462 aa	Known RBP	10.73	□□□□□ -0.69
GARNL3-218	ENST00000487565	CD46	P15529	392 aa		10.72	□□□□□ -0.69
GARNL3-218	ENST00000487565	ATP6V1A	P38606	617 aa		10.72	□□□□□ -0.69
GARNL3-218	ENST00000487565	SCUBE3	Q8IX30	993 aa		10.72	□□□□□ -0.69
GARNL3-218	ENST00000487565	TRAK1	Q9UPV9	953 aa		10.72	□□□□□ -0.69
GARNL3-218	ENST00000487565	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.72	□□□□□ -0.69
GARNL3-218	ENST00000487565	FAM135B	Q49AJ0	1406 aa		10.72	□□□□□ -0.69
GARNL3-218	ENST00000487565	QRICH2	Q9H0J4	1663 aa		10.72	□□□□□ -0.69
GARNL3-218	ENST00000487565	ROBO2	Q9HCK4	1378 aa		10.7	□□□□□ -0.7
GARNL3-218	ENST00000487565	SBNO2	Q9Y2G9	1366 aa		10.7	□□□□□ -0.7
GARNL3-218	ENST00000487565	ADH1B	P00325	375 aa		10.7	□□□□□ -0.7
GARNL3-218	ENST00000487565	MORN1	Q5T089	497 aa		10.7	□□□□□ -0.7
GARNL3-218	ENST00000487565	ST20-MTHFS	A0A0A6YYL1	179 aa		10.69	□□□□□ -0.7
GARNL3-218	ENST00000487565	PRAM1	Q96QH2	718 aa		10.69	□□□□□ -0.7

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