RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 MARCH6O60337 910 aa13.27□□□□□ -0.29
HDAC6-228ENST00000486227 TRDNQ13061 729 aa13.27□□□□□ -0.29
HDAC6-228ENST00000486227 CPLX2Q6PUV4 134 aaKnown RBP13.27□□□□□ -0.29
HDAC6-228ENST00000486227 SYNE3Q6ZMZ3 975 aa13.27□□□□□ -0.29
HDAC6-228ENST00000486227 AEBP1Q8IUX7 1158 aa13.27□□□□□ -0.29
HDAC6-228ENST00000486227 PLEKHH1Q9ULM0 1364 aa13.26□□□□□ -0.29
HDAC6-228ENST00000486227 UBAP1LF5GYI3 381 aa13.26□□□□□ -0.29
HDAC6-228ENST00000486227 CPLX1O14810 134 aa13.26□□□□□ -0.29
HDAC6-228ENST00000486227 AMOTQ4VCS5 1084 aa13.26□□□□□ -0.29
HDAC6-228ENST00000486227 CTDP1Q9Y5B0 961 aaPredicted RBP13.26□□□□□ -0.29
HDAC6-228ENST00000486227 KDM6BO15054 1643 aa13.26□□□□□ -0.29
HDAC6-228ENST00000486227 A0A1W2PP64 1363 aa13.26□□□□□ -0.29
HDAC6-228ENST00000486227 IL16Q14005 1332 aa13.26□□□□□ -0.29
HDAC6-228ENST00000486227 RABEP1Q15276 862 aa13.26□□□□□ -0.29
HDAC6-228ENST00000486227 RASSF8Q8NHQ8 419 aa13.26□□□□□ -0.29
HDAC6-228ENST00000486227 PTCD1O75127 700 aaKnown RBP13.26□□□□□ -0.29
HDAC6-228ENST00000486227 IGHDP01880 384 aa13.26□□□□□ -0.29
HDAC6-228ENST00000486227 AKAP17AQ02040 695 aaKnown RBP13.26□□□□□ -0.29
HDAC6-228ENST00000486227 RAD21O60216 631 aa13.25□□□□□ -0.29
HDAC6-228ENST00000486227 SMARCA5O60264 1052 aaPredicted RBP13.25□□□□□ -0.29
HDAC6-228ENST00000486227 VPS53Q5VIR6 699 aa13.25□□□□□ -0.29
HDAC6-228ENST00000486227 YTHDC2Q9H6S0 1430 aaKnown RBP13.25□□□□□ -0.29
HDAC6-228ENST00000486227 MSH6P52701 1360 aa13.25□□□□□ -0.29
HDAC6-228ENST00000486227 GCC2Q8IWJ2 1684 aa13.24□□□□□ -0.29
HDAC6-228ENST00000486227 EIF4A2Q14240 407 aaKnown RBP13.24□□□□□ -0.29
HDAC6-228ENST00000486227 PIK3C2GO75747 1445 aa13.24□□□□□ -0.29
HDAC6-228ENST00000486227 TTC21AQ8NDW8 1320 aa13.23□□□□□ -0.29
HDAC6-228ENST00000486227 FOSBP53539 338 aa13.23□□□□□ -0.29
HDAC6-228ENST00000486227 FLIIQ13045 1269 aa13.23□□□□□ -0.29
HDAC6-228ENST00000486227 CCDC27Q2M243 656 aa13.23□□□□□ -0.29
HDAC6-228ENST00000486227 AACSQ86V21 672 aa13.23□□□□□ -0.29
HDAC6-228ENST00000486227 RALYLQ86SE5 291 aaKnown RBP13.23□□□□□ -0.29
HDAC6-228ENST00000486227 CCDC39Q9UFE4 941 aa13.23□□□□□ -0.29
HDAC6-228ENST00000486227 ARHGEF5Q12774 1597 aa13.23□□□□□ -0.29
HDAC6-228ENST00000486227 NUTM1Q86Y26 1132 aa13.22□□□□□ -0.29
HDAC6-228ENST00000486227 SPINK5Q9NQ38 1064 aaPredicted RBP13.22□□□□□ -0.29
HDAC6-228ENST00000486227 CIZ1Q9ULV3 898 aaPredicted RBP13.22□□□□□ -0.29
HDAC6-228ENST00000486227 SPATA31E1Q6ZUB1 1445 aa13.22□□□□□ -0.29
HDAC6-228ENST00000486227 KCNA6P17658 529 aa13.22□□□□□ -0.29
HDAC6-228ENST00000486227 PHACTR3Q96KR7 559 aa13.22□□□□□ -0.29
HDAC6-228ENST00000486227 PCDHB15Q9Y5E8 787 aa13.22□□□□□ -0.29
HDAC6-228ENST00000486227 ATP10AO60312 1499 aa13.22□□□□□ -0.29
HDAC6-228ENST00000486227 PSMA5P28066 241 aa13.21□□□□□ -0.29
HDAC6-228ENST00000486227 CHRNA2Q15822 529 aa13.21□□□□□ -0.29
HDAC6-228ENST00000486227 CFAP65Q6ZU64 1925 aaKnown RBP13.21□□□□□ -0.29
HDAC6-228ENST00000486227 NFXL1Q6ZNB6 911 aa13.21□□□□□ -0.29
HDAC6-228ENST00000486227 CNNM1Q9NRU3 951 aa13.21□□□□□ -0.29
HDAC6-228ENST00000486227 TNNQ9UQP3 1299 aa13.21□□□□□ -0.29
HDAC6-228ENST00000486227 HIP1O00291 1037 aa13.21□□□□□ -0.29
HDAC6-228ENST00000486227 HSPA2P54652 639 aa13.21□□□□□ -0.29
HDAC6-228ENST00000486227 TPM4P67936 248 aa13.21□□□□□ -0.29
HDAC6-228ENST00000486227 ANKRD24Q8TF21 1146 aa13.21□□□□□ -0.29
HDAC6-228ENST00000486227 C8orf58Q8NAV2 365 aa13.21□□□□□ -0.3
HDAC6-228ENST00000486227 NPATQ14207 1427 aa13.2□□□□□ -0.3
HDAC6-228ENST00000486227 LRRFIP2Q9Y608 721 aaKnown RBP13.2□□□□□ -0.3
HDAC6-228ENST00000486227 STARD3NLO95772 234 aa13.2□□□□□ -0.3
HDAC6-228ENST00000486227 DNAAF4Q8WXU2 420 aa13.2□□□□□ -0.3
HDAC6-228ENST00000486227 CCDC85AQ96PX6 553 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-228ENST00000486227 ABCC1P33527 1531 aa13.2□□□□□ -0.3
HDAC6-228ENST00000486227 DHX16O60231 1041 aaKnown RBP13.2□□□□□ -0.3
HDAC6-228ENST00000486227 MCM2P49736 904 aa13.2□□□□□ -0.3
HDAC6-228ENST00000486227 BICD2Q8TD16 824 aa13.2□□□□□ -0.3
HDAC6-228ENST00000486227 TMOD3Q9NYL9 352 aa13.2□□□□□ -0.3
HDAC6-228ENST00000486227 DBF4Q9UBU7 674 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-228ENST00000486227 ANXA1P04083 346 aa13.19□□□□□ -0.3
HDAC6-228ENST00000486227 TRIM29Q14134 588 aa13.19□□□□□ -0.3
HDAC6-228ENST00000486227 CCDC57Q2TAC2 916 aa13.19□□□□□ -0.3
HDAC6-228ENST00000486227 SAMD9LQ8IVG5 1584 aa13.19□□□□□ -0.3
HDAC6-228ENST00000486227 PTPRCP08575 1304 aa13.19□□□□□ -0.3
HDAC6-228ENST00000486227 EXOC5O00471 708 aa13.19□□□□□ -0.3
HDAC6-228ENST00000486227 LARP1Q6PKG0 1096 aaKnown RBP13.19□□□□□ -0.3
HDAC6-228ENST00000486227 TBX22Q9Y458 520 aa13.19□□□□□ -0.3
HDAC6-228ENST00000486227 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.19□□□□□ -0.3
HDAC6-228ENST00000486227 CWC27Q6UX04 472 aaKnown RBP13.19□□□□□ -0.3
HDAC6-228ENST00000486227 KIF1BPQ96EK5 621 aa13.19□□□□□ -0.3
HDAC6-228ENST00000486227 K7ELQ4 463 aaPredicted RBP13.18□□□□□ -0.3
HDAC6-228ENST00000486227 CCDC158Q5M9N0 1113 aa13.18□□□□□ -0.3
HDAC6-228ENST00000486227 MX1P20591 662 aa13.18□□□□□ -0.3
HDAC6-228ENST00000486227 TBC1D2BQ9UPU7 963 aa13.18□□□□□ -0.3
HDAC6-228ENST00000486227 NPC1L1Q9UHC9 1359 aa13.18□□□□□ -0.3
HDAC6-228ENST00000486227 ADGBQ8N7X0 1667 aa13.18□□□□□ -0.3
HDAC6-228ENST00000486227 MYD88Q99836 296 aa13.18□□□□□ -0.3
HDAC6-228ENST00000486227 NPHP3Q7Z494 1330 aa13.18□□□□□ -0.3
HDAC6-228ENST00000486227 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.18□□□□□ -0.3
HDAC6-228ENST00000486227 RBM10P98175 930 aaKnown RBP13.18□□□□□ -0.3
HDAC6-228ENST00000486227 ZSCAN30Q86W11 494 aa13.18□□□□□ -0.3
HDAC6-228ENST00000486227 YEATS2Q9ULM3 1422 aa13.18□□□□□ -0.3
HDAC6-228ENST00000486227 RLBP1P12271 317 aa13.17□□□□□ -0.3
HDAC6-228ENST00000486227 CAVIN1Q6NZI2 390 aaKnown RBP13.17□□□□□ -0.3
HDAC6-228ENST00000486227 TSPYL6Q8N831 410 aa13.17□□□□□ -0.3
HDAC6-228ENST00000486227 CEP126Q9P2H0 1117 aa13.17□□□□□ -0.3
HDAC6-228ENST00000486227 TTC39AQ5SRH9 613 aa13.17□□□□□ -0.3
HDAC6-228ENST00000486227 CREBRFQ8IUR6 639 aa13.17□□□□□ -0.3
HDAC6-228ENST00000486227 NEO1Q92859 1461 aa13.17□□□□□ -0.3
HDAC6-228ENST00000486227 CLCN1P35523 988 aa13.17□□□□□ -0.3
HDAC6-228ENST00000486227 CWC22Q9HCG8 908 aaKnown RBP13.17□□□□□ -0.3
HDAC6-228ENST00000486227 ERICH2A1L162 156 aa13.17□□□□□ -0.3
HDAC6-228ENST00000486227 BECN2A8MW95 431 aa13.17□□□□□ -0.3
HDAC6-228ENST00000486227 MTHFSDQ2M296 383 aaKnown RBP13.17□□□□□ -0.3
HDAC6-228ENST00000486227 ZNF771Q7L3S4 317 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms