RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-208ENST00000485627 AEBP1Q8IUX7 1158 aa12.41□□□□□ -0.42
CTSA-208ENST00000485627 PHACTR3Q96KR7 559 aa12.41□□□□□ -0.42
CTSA-208ENST00000485627 TRIM35Q9UPQ4 493 aa12.4□□□□□ -0.42
CTSA-208ENST00000485627 U3KPZ7 1027 aaPredicted RBP12.4□□□□□ -0.42
CTSA-208ENST00000485627 IL16Q14005 1332 aa12.39□□□□□ -0.43
CTSA-208ENST00000485627 TRMT2AQ8IZ69 625 aaKnown RBP12.39□□□□□ -0.43
CTSA-208ENST00000485627 CABLES1Q8TDN4 633 aa12.39□□□□□ -0.43
CTSA-208ENST00000485627 ANKRD24Q8TF21 1146 aa12.39□□□□□ -0.43
CTSA-208ENST00000485627 GJD4Q96KN9 370 aaPredicted RBP12.39□□□□□ -0.43
CTSA-208ENST00000485627 LTN1O94822 1766 aa12.38□□□□□ -0.43
CTSA-208ENST00000485627 CCDC125Q86Z20 511 aa12.38□□□□□ -0.43
CTSA-208ENST00000485627 GAS2L2Q8NHY3 880 aa12.38□□□□□ -0.43
CTSA-208ENST00000485627 SPINK5Q9NQ38 1064 aaPredicted RBP12.38□□□□□ -0.43
CTSA-208ENST00000485627 KDRP35968 1356 aa12.38□□□□□ -0.43
CTSA-208ENST00000485627 CSB-PGBD3P0DP91 1061 aa12.37□□□□□ -0.43
CTSA-208ENST00000485627 RTF1Q92541 710 aaKnown RBP12.37□□□□□ -0.43
CTSA-208ENST00000485627 PHRF1Q9P1Y6 1649 aaKnown RBP12.37□□□□□ -0.43
CTSA-208ENST00000485627 GLI3P10071 1580 aa12.36□□□□□ -0.43
CTSA-208ENST00000485627 IRX6P78412 446 aaPredicted RBP12.36□□□□□ -0.43
CTSA-208ENST00000485627 NBPF6Q5VWK0 638 aa12.36□□□□□ -0.43
CTSA-208ENST00000485627 ERICH6BQ5W0A0 696 aa12.36□□□□□ -0.43
CTSA-208ENST00000485627 USHBP1Q8N6Y0 703 aa12.36□□□□□ -0.43
CTSA-208ENST00000485627 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.36□□□□□ -0.43
CTSA-208ENST00000485627 NBPF4Q96M43 638 aa12.36□□□□□ -0.43
CTSA-208ENST00000485627 PRDM11Q9NQV5 511 aa12.36□□□□□ -0.43
CTSA-208ENST00000485627 LAS1LQ9Y4W2 734 aaKnown RBP12.36□□□□□ -0.43
CTSA-208ENST00000485627 RGPD1P0DJD0 1748 aa12.36□□□□□ -0.43
CTSA-208ENST00000485627 CPDO75976 1380 aa12.35□□□□□ -0.43
CTSA-208ENST00000485627 KIAA0232Q92628 1395 aa12.35□□□□□ -0.43
CTSA-208ENST00000485627 RRP1P56182 461 aaKnown RBP12.35□□□□□ -0.43
CTSA-208ENST00000485627 GNAI1P63096 354 aa12.35□□□□□ -0.43
CTSA-208ENST00000485627 CHRNA2Q15822 529 aa12.35□□□□□ -0.43
CTSA-208ENST00000485627 AXIN2Q9Y2T1 843 aa12.35□□□□□ -0.43
CTSA-208ENST00000485627 COL22A1Q8NFW1 1626 aaPredicted RBP12.35□□□□□ -0.43
CTSA-208ENST00000485627 RNF123Q5XPI4 1314 aa12.35□□□□□ -0.43
CTSA-208ENST00000485627 MTHFSDQ2M296 383 aaKnown RBP12.34□□□□□ -0.43
CTSA-208ENST00000485627 NLRP2Q9NX02 1062 aa12.34□□□□□ -0.43
CTSA-208ENST00000485627 BRWD3Q6RI45 1802 aa12.34□□□□□ -0.43
CTSA-208ENST00000485627 ERBB3P21860 1342 aa12.34□□□□□ -0.43
CTSA-208ENST00000485627 LRP5O75197 1615 aa12.33□□□□□ -0.43
CTSA-208ENST00000485627 CT47B1P0C2W7 299 aaPredicted RBP12.33□□□□□ -0.44
CTSA-208ENST00000485627 PLEKHO1Q53GL0 409 aaPredicted RBP12.33□□□□□ -0.44
CTSA-208ENST00000485627 SEPT12Q8IYM1 358 aa12.33□□□□□ -0.44
CTSA-208ENST00000485627 TSR2Q969E8 191 aaKnown RBP12.33□□□□□ -0.44
CTSA-208ENST00000485627 IFT57Q9NWB7 429 aa12.33□□□□□ -0.44
CTSA-208ENST00000485627 FANCIQ9NVI1 1328 aa12.33□□□□□ -0.44
CTSA-208ENST00000485627 ABCC6O95255 1503 aa12.32□□□□□ -0.44
CTSA-208ENST00000485627 HTATSF1O43719 755 aaKnown RBP12.32□□□□□ -0.44
CTSA-208ENST00000485627 AMOTQ4VCS5 1084 aa12.32□□□□□ -0.44
CTSA-208ENST00000485627 THUMPD2Q9BTF0 503 aaKnown RBP12.32□□□□□ -0.44
CTSA-208ENST00000485627 FAM83GA6ND36 823 aa12.31□□□□□ -0.44
CTSA-208ENST00000485627 GNAT3A8MTJ3 354 aa12.31□□□□□ -0.44
CTSA-208ENST00000485627 SF3B2Q13435 895 aaKnown RBP12.31□□□□□ -0.44
CTSA-208ENST00000485627 DCTN1Q14203 1278 aa12.31□□□□□ -0.44
CTSA-208ENST00000485627 UNC5CLQ8IV45 518 aa12.31□□□□□ -0.44
CTSA-208ENST00000485627 RAPGEF4Q8WZA2 1011 aa12.31□□□□□ -0.44
CTSA-208ENST00000485627 CFAP44Q96MT7 982 aa12.31□□□□□ -0.44
CTSA-208ENST00000485627 TATP17735 454 aaPredicted RBP12.3□□□□□ -0.44
CTSA-208ENST00000485627 CANXP27824 592 aaKnown RBP12.3□□□□□ -0.44
CTSA-208ENST00000485627 EVA1CP58658 441 aa12.3□□□□□ -0.44
CTSA-208ENST00000485627 EXOSC9Q06265 439 aaKnown RBP12.3□□□□□ -0.44
CTSA-208ENST00000485627 C1orf141Q5JVX7 400 aa12.3□□□□□ -0.44
CTSA-208ENST00000485627 MCM10Q7L590 875 aa12.3□□□□□ -0.44
CTSA-208ENST00000485627 MAP3K5Q99683 1374 aa12.3□□□□□ -0.44
CTSA-208ENST00000485627 SLIT2O94813 1529 aa12.29□□□□□ -0.44
CTSA-208ENST00000485627 FAM182BQ5T319 152 aa12.29□□□□□ -0.44
CTSA-208ENST00000485627 ZNF530Q6P9A1 599 aaPredicted RBP12.29□□□□□ -0.44
CTSA-208ENST00000485627 ZNF853P0CG23 659 aa12.28□□□□□ -0.44
CTSA-208ENST00000485627 R3HDM1Q15032 1099 aaKnown RBP12.28□□□□□ -0.44
CTSA-208ENST00000485627 AKAP4Q5JQC9 854 aa12.28□□□□□ -0.44
CTSA-208ENST00000485627 TOM1L2Q6ZVM7 507 aa12.28□□□□□ -0.44
CTSA-208ENST00000485627 CCDC9Q9Y3X0 531 aaKnown RBP12.28□□□□□ -0.44
CTSA-208ENST00000485627 CRYBG1Q9Y4K1 1723 aa12.28□□□□□ -0.44
CTSA-208ENST00000485627 NCAPD2Q15021 1401 aa12.28□□□□□ -0.44
CTSA-208ENST00000485627 PLIN1O60240 522 aa12.27□□□□□ -0.45
CTSA-208ENST00000485627 RARSP54136 660 aaKnown RBP12.27□□□□□ -0.45
CTSA-208ENST00000485627 EN1Q05925 392 aaPredicted RBP12.27□□□□□ -0.45
CTSA-208ENST00000485627 ZNF428Q96B54 188 aa12.27□□□□□ -0.45
CTSA-208ENST00000485627 STRN4Q9NRL3 753 aa12.27□□□□□ -0.45
CTSA-208ENST00000485627 MBIPQ9NS73 344 aa12.27□□□□□ -0.45
CTSA-208ENST00000485627 PPP4R2Q9NY27 417 aa12.27□□□□□ -0.45
CTSA-208ENST00000485627 SPG7Q9UQ90 795 aa12.27□□□□□ -0.45
CTSA-208ENST00000485627 WDR17Q8IZU2 1322 aa12.27□□□□□ -0.45
CTSA-208ENST00000485627 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.26□□□□□ -0.45
CTSA-208ENST00000485627 BCAR3O75815 825 aa12.26□□□□□ -0.45
CTSA-208ENST00000485627 KRT27Q7Z3Y8 459 aa12.26□□□□□ -0.45
CTSA-208ENST00000485627 TSPYL4Q9UJ04 414 aa12.26□□□□□ -0.45
CTSA-208ENST00000485627 COL18A1P39060 1754 aa12.25□□□□□ -0.45
CTSA-208ENST00000485627 DLG5Q8TDM6 1919 aa12.25□□□□□ -0.45
CTSA-208ENST00000485627 A0A0G2JS52 829 aa12.25□□□□□ -0.45
CTSA-208ENST00000485627 CHL1O00533 1208 aa12.25□□□□□ -0.45
CTSA-208ENST00000485627 MYT1Q01538 1121 aa12.25□□□□□ -0.45
CTSA-208ENST00000485627 FRAT1Q92837 279 aaPredicted RBP12.25□□□□□ -0.45
CTSA-208ENST00000485627 SMC4Q9NTJ3 1288 aa12.25□□□□□ -0.45
CTSA-208ENST00000485627 RGPD5Q99666 1765 aa12.25□□□□□ -0.45
CTSA-208ENST00000485627 TAF7Q15545 349 aaPredicted RBP12.24□□□□□ -0.45
CTSA-208ENST00000485627 PELP1Q8IZL8 1130 aaKnown RBP12.24□□□□□ -0.45
CTSA-208ENST00000485627 CARD10Q9BWT7 1032 aa12.24□□□□□ -0.45
CTSA-208ENST00000485627 PLEKHG2Q9H7P9 1386 aa12.24□□□□□ -0.45
CTSA-208ENST00000485627 BABAM1Q9NWV8 329 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms