RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 TMPOP42166 694 aaKnown RBP23.36■■□□□ 1.33
SMARCD3-212ENST00000485610 GAS2L2Q8NHY3 880 aa23.36■■□□□ 1.33
SMARCD3-212ENST00000485610 ATRNO75882 1429 aa23.36■■□□□ 1.33
SMARCD3-212ENST00000485610 SENP3-EIF4A1A0A087X0R7 540 aa23.36■■□□□ 1.33
SMARCD3-212ENST00000485610 NCBP3Q53F19 620 aaKnown RBP23.36■■□□□ 1.33
SMARCD3-212ENST00000485610 USP35Q9P2H5 1018 aa23.36■■□□□ 1.33
SMARCD3-212ENST00000485610 THRAP3Q9Y2W1 955 aaKnown RBP23.36■■□□□ 1.33
SMARCD3-212ENST00000485610 IL2RBP14784 551 aa23.35■■□□□ 1.33
SMARCD3-212ENST00000485610 AMOTQ4VCS5 1084 aa23.35■■□□□ 1.33
SMARCD3-212ENST00000485610 RRP7AQ9Y3A4 280 aaKnown RBP23.35■■□□□ 1.33
SMARCD3-212ENST00000485610 PLEKHO1Q53GL0 409 aaPredicted RBP23.34■■□□□ 1.33
SMARCD3-212ENST00000485610 CCDC9Q9Y3X0 531 aaKnown RBP23.34■■□□□ 1.33
SMARCD3-212ENST00000485610 GLI3P10071 1580 aa23.34■■□□□ 1.33
SMARCD3-212ENST00000485610 LRRC37A3O60309 1634 aa23.33■■□□□ 1.33
SMARCD3-212ENST00000485610 MTHFSDQ2M296 383 aaKnown RBP23.33■■□□□ 1.33
SMARCD3-212ENST00000485610 NEUROD2Q15784 382 aa23.32■■□□□ 1.32
SMARCD3-212ENST00000485610 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.32■■□□□ 1.32
SMARCD3-212ENST00000485610 SALL2Q9Y467 1007 aaPredicted RBP23.32■■□□□ 1.32
SMARCD3-212ENST00000485610 RIPK4P57078 832 aa23.31■■□□□ 1.32
SMARCD3-212ENST00000485610 CCDC27Q2M243 656 aa23.31■■□□□ 1.32
SMARCD3-212ENST00000485610 THSD7AQ9UPZ6 1657 aa23.31■■□□□ 1.32
SMARCD3-212ENST00000485610 LMOD3Q0VAK6 560 aa23.3■■□□□ 1.32
SMARCD3-212ENST00000485610 CDCA7Q9BWT1 371 aaPredicted RBP23.3■■□□□ 1.32
SMARCD3-212ENST00000485610 TRPC5Q9UL62 973 aaPredicted RBP23.3■■□□□ 1.32
SMARCD3-212ENST00000485610 SPG7Q9UQ90 795 aa23.3■■□□□ 1.32
SMARCD3-212ENST00000485610 SCN11AQ9UI33 1791 aa23.3■■□□□ 1.32
SMARCD3-212ENST00000485610 MAP3K5Q99683 1374 aa23.3■■□□□ 1.32
SMARCD3-212ENST00000485610 ZNF530Q6P9A1 599 aaPredicted RBP23.3■■□□□ 1.32
SMARCD3-212ENST00000485610 BARGINQ6ZT62 677 aa23.3■■□□□ 1.32
SMARCD3-212ENST00000485610 ADAMTS7Q9UKP4 1686 aa23.29■■□□□ 1.32
SMARCD3-212ENST00000485610 TNS2Q63HR2 1409 aa23.29■■□□□ 1.32
SMARCD3-212ENST00000485610 PHF23Q9BUL5 403 aaPredicted RBP23.29■■□□□ 1.32
SMARCD3-212ENST00000485610 ZNF521Q96K83 1311 aa23.28■■□□□ 1.32
SMARCD3-212ENST00000485610 TRIM35Q9UPQ4 493 aa23.27■■□□□ 1.32
SMARCD3-212ENST00000485610 PCDH11XQ9BZA7 1347 aa23.27■■□□□ 1.31
SMARCD3-212ENST00000485610 PCDH11YQ9BZA8 1340 aa23.27■■□□□ 1.31
SMARCD3-212ENST00000485610 C1orf141Q5JVX7 400 aa23.26■■□□□ 1.31
SMARCD3-212ENST00000485610 ZNF772Q68DY9 489 aaPredicted RBP23.26■■□□□ 1.31
SMARCD3-212ENST00000485610 WWC1Q8IX03 1113 aa23.26■■□□□ 1.31
SMARCD3-212ENST00000485610 ZCRB1Q8TBF4 217 aaKnown RBP23.25■■□□□ 1.31
SMARCD3-212ENST00000485610 GJD4Q96KN9 370 aaPredicted RBP23.25■■□□□ 1.31
SMARCD3-212ENST00000485610 GNAT3A8MTJ3 354 aa23.24■■□□□ 1.31
SMARCD3-212ENST00000485610 HTATSF1O43719 755 aaKnown RBP23.24■■□□□ 1.31
SMARCD3-212ENST00000485610 AKAP4Q5JQC9 854 aa23.24■■□□□ 1.31
SMARCD3-212ENST00000485610 ILDR1Q86SU0 546 aaPredicted RBP23.24■■□□□ 1.31
SMARCD3-212ENST00000485610 SIPA1L3O60292 1781 aaPredicted RBP23.23■■□□□ 1.31
SMARCD3-212ENST00000485610 RTF1Q92541 710 aaKnown RBP23.23■■□□□ 1.31
SMARCD3-212ENST00000485610 QTRT2Q9H974 415 aaKnown RBP23.23■■□□□ 1.31
SMARCD3-212ENST00000485610 FAM98CQ17RN3 349 aaKnown RBP23.22■■□□□ 1.31
SMARCD3-212ENST00000485610 IFNL2Q8IZJ0 200 aa23.22■■□□□ 1.31
SMARCD3-212ENST00000485610 PHKG2P15735 406 aa23.21■■□□□ 1.31
SMARCD3-212ENST00000485610 WDR63Q8IWG1 891 aa23.21■■□□□ 1.31
SMARCD3-212ENST00000485610 CYP27B1O15528 508 aa23.2■■□□□ 1.3
SMARCD3-212ENST00000485610 PDE3BQ13370 1112 aa23.2■■□□□ 1.3
SMARCD3-212ENST00000485610 TOGARAM1Q9Y4F4 1720 aa23.2■■□□□ 1.3
SMARCD3-212ENST00000485610 EXOC5O00471 708 aa23.19■■□□□ 1.3
SMARCD3-212ENST00000485610 CALD1Q05682 793 aaKnown RBP23.19■■□□□ 1.3
SMARCD3-212ENST00000485610 GOLGA2Q08379 1002 aa23.19■■□□□ 1.3
SMARCD3-212ENST00000485610 DDB1Q16531 1140 aa23.19■■□□□ 1.3
SMARCD3-212ENST00000485610 KAT6BQ8WYB5 2073 aa23.18■■□□□ 1.3
SMARCD3-212ENST00000485610 HSP90AB1P08238 724 aaKnown RBP23.18■■□□□ 1.3
SMARCD3-212ENST00000485610 MCM10Q7L590 875 aa23.18■■□□□ 1.3
SMARCD3-212ENST00000485610 IL16Q14005 1332 aa23.18■■□□□ 1.3
SMARCD3-212ENST00000485610 CEMIPQ8WUJ3 1361 aa23.18■■□□□ 1.3
SMARCD3-212ENST00000485610 KDM6AO15550 1401 aaPredicted RBP23.18■■□□□ 1.3
SMARCD3-212ENST00000485610 BRWD3Q6RI45 1802 aa23.18■■□□□ 1.3
SMARCD3-212ENST00000485610 DCTN1Q14203 1278 aa23.17■■□□□ 1.3
SMARCD3-212ENST00000485610 THUMPD2Q9BTF0 503 aaKnown RBP23.17■■□□□ 1.3
SMARCD3-212ENST00000485610 DOT1LQ8TEK3 1739 aa23.17■■□□□ 1.3
SMARCD3-212ENST00000485610 MRC1P22897 1456 aa23.17■■□□□ 1.3
SMARCD3-212ENST00000485610 ITGB4P16144 1822 aa23.17■■□□□ 1.3
SMARCD3-212ENST00000485610 DDX54Q8TDD1 881 aaKnown RBP23.16■■□□□ 1.3
SMARCD3-212ENST00000485610 A0A0G2JS52 829 aa23.15■■□□□ 1.3
SMARCD3-212ENST00000485610 MYT1Q01538 1121 aa23.15■■□□□ 1.3
SMARCD3-212ENST00000485610 MPRIPQ6WCQ1 1025 aa23.15■■□□□ 1.3
SMARCD3-212ENST00000485610 IL17REQ8NFR9 667 aa23.15■■□□□ 1.3
SMARCD3-212ENST00000485610 KDM3BQ7LBC6 1761 aa23.15■■□□□ 1.3
SMARCD3-212ENST00000485610 E9PSI1 815 aa23.14■■□□□ 1.29
SMARCD3-212ENST00000485610 RNMTO43148 476 aaKnown RBP23.14■■□□□ 1.29
SMARCD3-212ENST00000485610 ONECUT3O60422 494 aaPredicted RBP23.14■■□□□ 1.29
SMARCD3-212ENST00000485610 RBM6P78332 1123 aaKnown RBP23.14■■□□□ 1.29
SMARCD3-212ENST00000485610 NKX1-1Q15270 411 aaPredicted RBP23.14■■□□□ 1.29
SMARCD3-212ENST00000485610 DCAF5Q96JK2 942 aa23.14■■□□□ 1.29
SMARCD3-212ENST00000485610 CDCA7LQ96GN5 454 aa23.12■■□□□ 1.29
SMARCD3-212ENST00000485610 SLFN5Q08AF3 891 aa23.11■■□□□ 1.29
SMARCD3-212ENST00000485610 LGR6Q9HBX8 967 aa23.11■■□□□ 1.29
SMARCD3-212ENST00000485610 IFT57Q9NWB7 429 aa23.11■■□□□ 1.29
SMARCD3-212ENST00000485610 RGS17Q9UGC6 210 aaPredicted RBP23.11■■□□□ 1.29
SMARCD3-212ENST00000485610 MYH16Q9H6N6 1097 aa23.11■■□□□ 1.29
SMARCD3-212ENST00000485610 SPINK5Q9NQ38 1064 aaPredicted RBP23.11■■□□□ 1.29
SMARCD3-212ENST00000485610 CENPBP07199 599 aaPredicted RBP23.1■■□□□ 1.29
SMARCD3-212ENST00000485610 GNAI1P63096 354 aa23.1■■□□□ 1.29
SMARCD3-212ENST00000485610 TEFQ10587 303 aa23.1■■□□□ 1.29
SMARCD3-212ENST00000485610 SEPT12Q8IYM1 358 aa23.09■■□□□ 1.29
SMARCD3-212ENST00000485610 SBF2Q86WG5 1849 aa23.08■■□□□ 1.29
SMARCD3-212ENST00000485610 ZNF853P0CG23 659 aa23.08■■□□□ 1.29
SMARCD3-212ENST00000485610 MARCH10Q8NA82 808 aaPredicted RBP23.08■■□□□ 1.29
SMARCD3-212ENST00000485610 CFAP44Q96MT7 982 aa23.08■■□□□ 1.29
SMARCD3-212ENST00000485610 PAPPAQ13219 1627 aa23.07■■□□□ 1.28
SMARCD3-212ENST00000485610 RXRBP28702 533 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms