RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 C8orf37Q96NL8 207 aa8.85□□□□□ -0.99
PTCD3-215ENST00000484203 TRAK1Q9UPV9 953 aa8.85□□□□□ -0.99
PTCD3-215ENST00000484203 ANKARQ7Z5J8 1434 aa8.85□□□□□ -0.99
PTCD3-215ENST00000484203 PLEKHH1Q9ULM0 1364 aa8.85□□□□□ -0.99
PTCD3-215ENST00000484203 WASLO00401 505 aaPredicted RBP8.84□□□□□ -0.99
PTCD3-215ENST00000484203 RBM6P78332 1123 aaKnown RBP8.84□□□□□ -0.99
PTCD3-215ENST00000484203 LMOD2Q6P5Q4 547 aa8.84□□□□□ -0.99
PTCD3-215ENST00000484203 KRT28Q7Z3Y7 464 aa8.84□□□□□ -0.99
PTCD3-215ENST00000484203 FNBP4Q8N3X1 1017 aaPredicted RBP8.84□□□□□ -0.99
PTCD3-215ENST00000484203 QTRT2Q9H974 415 aaKnown RBP8.84□□□□□ -0.99
PTCD3-215ENST00000484203 CDHR5Q9HBB8 845 aa8.84□□□□□ -0.99
PTCD3-215ENST00000484203 TRPC5Q9UL62 973 aaPredicted RBP8.84□□□□□ -0.99
PTCD3-215ENST00000484203 ARHGEF10O15013 1369 aa8.84□□□□□ -0.99
PTCD3-215ENST00000484203 GPRASP1Q5JY77 1395 aa8.84□□□□□ -0.99
PTCD3-215ENST00000484203 LRP6O75581 1613 aa8.83□□□□□ -1
PTCD3-215ENST00000484203 LAMC1P11047 1609 aa8.83□□□□□ -1
PTCD3-215ENST00000484203 SPATA31A3Q5VYP0 1347 aa8.83□□□□□ -1
PTCD3-215ENST00000484203 ADAMTS2O95450 1211 aa8.83□□□□□ -1
PTCD3-215ENST00000484203 SAFB2Q14151 953 aaKnown RBP eCLIP8.83□□□□□ -1
PTCD3-215ENST00000484203 SBNO1A3KN83 1393 aa8.83□□□□□ -1
PTCD3-215ENST00000484203 CDK12Q9NYV4 1490 aaPredicted RBP8.83□□□□□ -1
PTCD3-215ENST00000484203 SHPRHQ149N8 1683 aa8.82□□□□□ -1
PTCD3-215ENST00000484203 GPIHBP1Q8IV16 184 aa8.82□□□□□ -1
PTCD3-215ENST00000484203 USP21Q9UK80 565 aa8.82□□□□□ -1
PTCD3-215ENST00000484203 SETD1AO15047 1707 aaKnown RBP8.82□□□□□ -1
PTCD3-215ENST00000484203 NALCNQ8IZF0 1738 aa8.81□□□□□ -1
PTCD3-215ENST00000484203 PPP1R3GB7ZBB8 358 aa8.81□□□□□ -1
PTCD3-215ENST00000484203 COL9A1P20849 921 aa8.81□□□□□ -1
PTCD3-215ENST00000484203 XPCQ01831 940 aaPredicted RBP8.81□□□□□ -1
PTCD3-215ENST00000484203 DMRTA1Q5VZB9 504 aa8.81□□□□□ -1
PTCD3-215ENST00000484203 PXDNQ92626 1479 aa8.81□□□□□ -1
PTCD3-215ENST00000484203 ADGRB1O14514 1584 aa8.81□□□□□ -1
PTCD3-215ENST00000484203 MINK1Q8N4C8 1332 aaPredicted RBP8.8□□□□□ -1
PTCD3-215ENST00000484203 NHSL1Q5SYE7 1610 aa8.8□□□□□ -1
PTCD3-215ENST00000484203 NGDNQ8NEJ9 315 aaKnown RBP8.8□□□□□ -1
PTCD3-215ENST00000484203 HIRIP3Q9BW71 556 aaPredicted RBP8.8□□□□□ -1
PTCD3-215ENST00000484203 TRIM26Q12899 539 aaPredicted RBP8.79□□□□□ -1
PTCD3-215ENST00000484203 L3MBTL2Q969R5 705 aa8.79□□□□□ -1
PTCD3-215ENST00000484203 KNDC1Q76NI1 1749 aa8.79□□□□□ -1
PTCD3-215ENST00000484203 TNS3Q68CZ2 1445 aa8.79□□□□□ -1
PTCD3-215ENST00000484203 IFT172Q9UG01 1749 aa8.78□□□□□ -1
PTCD3-215ENST00000484203 TK2O00142 265 aa8.78□□□□□ -1
PTCD3-215ENST00000484203 PTGDRQ13258 359 aa8.78□□□□□ -1
PTCD3-215ENST00000484203 UNC5CLQ8IV45 518 aa8.78□□□□□ -1
PTCD3-215ENST00000484203 PMFBP1Q8TBY8 1022 aa8.78□□□□□ -1
PTCD3-215ENST00000484203 NUDT16Q96DE0 195 aaKnown RBP8.78□□□□□ -1
PTCD3-215ENST00000484203 CDK19Q9BWU1 502 aa8.78□□□□□ -1
PTCD3-215ENST00000484203 NPDC1Q9NQX5 325 aaPredicted RBP8.78□□□□□ -1
PTCD3-215ENST00000484203 CENPJQ9HC77 1338 aaPredicted RBP8.78□□□□□ -1
PTCD3-215ENST00000484203 BRD4O60885 1362 aaPredicted RBP8.77□□□□□ -1.01
PTCD3-215ENST00000484203 PLEKHG3A1L390 1219 aa8.77□□□□□ -1.01
PTCD3-215ENST00000484203 FCHSD2O94868 740 aa8.77□□□□□ -1.01
PTCD3-215ENST00000484203 ADGRD1Q6QNK2 874 aa8.77□□□□□ -1.01
PTCD3-215ENST00000484203 GJD4Q96KN9 370 aaPredicted RBP8.77□□□□□ -1.01
PTCD3-215ENST00000484203 ZBED2Q9BTP6 218 aa8.77□□□□□ -1.01
PTCD3-215ENST00000484203 TULP4Q9NRJ4 1543 aa8.76□□□□□ -1.01
PTCD3-215ENST00000484203 KIF1AQ12756 1690 aa8.76□□□□□ -1.01
PTCD3-215ENST00000484203 NEUROD1Q13562 356 aa8.76□□□□□ -1.01
PTCD3-215ENST00000484203 PROX2Q3B8N5 592 aa8.76□□□□□ -1.01
PTCD3-215ENST00000484203 NBPF1Q3BBV0 1214 aa8.76□□□□□ -1.01
PTCD3-215ENST00000484203 CCDC125Q86Z20 511 aa8.76□□□□□ -1.01
PTCD3-215ENST00000484203 ADGRB2O60241 1585 aa8.76□□□□□ -1.01
PTCD3-215ENST00000484203 ATAD2Q6PL18 1390 aa8.75□□□□□ -1.01
PTCD3-215ENST00000484203 ATRNO75882 1429 aa8.75□□□□□ -1.01
PTCD3-215ENST00000484203 PRSS12P56730 875 aa8.75□□□□□ -1.01
PTCD3-215ENST00000484203 SRPK2P78362 688 aaKnown RBP8.75□□□□□ -1.01
PTCD3-215ENST00000484203 HIC1Q14526 733 aa8.75□□□□□ -1.01
PTCD3-215ENST00000484203 CDCA7LQ96GN5 454 aa8.75□□□□□ -1.01
PTCD3-215ENST00000484203 EVC2Q86UK5 1308 aa8.75□□□□□ -1.01
PTCD3-215ENST00000484203 PRR36Q9H6K5 1346 aa8.75□□□□□ -1.01
PTCD3-215ENST00000484203 ROCK2O75116 1388 aaKnown RBP8.74□□□□□ -1.01
PTCD3-215ENST00000484203 COL22A1Q8NFW1 1626 aaPredicted RBP8.74□□□□□ -1.01
PTCD3-215ENST00000484203 VPS72Q15906 364 aa8.74□□□□□ -1.01
PTCD3-215ENST00000484203 NBPF8Q3BBV2 869 aa8.74□□□□□ -1.01
PTCD3-215ENST00000484203 SLC4A5Q9BY07 1137 aa8.74□□□□□ -1.01
PTCD3-215ENST00000484203 VPS9D1Q9Y2B5 631 aa8.74□□□□□ -1.01
PTCD3-215ENST00000484203 POLR3AO14802 1390 aaPredicted RBP8.73□□□□□ -1.01
PTCD3-215ENST00000484203 BCL9LQ86UU0 1499 aa8.73□□□□□ -1.01
PTCD3-215ENST00000484203 TRIM6-TRIM34B2RNG4 842 aa8.73□□□□□ -1.01
PTCD3-215ENST00000484203 GNPATO15228 680 aa8.73□□□□□ -1.01
PTCD3-215ENST00000484203 GPR37O15354 613 aa8.73□□□□□ -1.01
PTCD3-215ENST00000484203 SIN3AQ96ST3 1273 aa8.73□□□□□ -1.01
PTCD3-215ENST00000484203 FMN2Q9NZ56 1722 aa8.73□□□□□ -1.01
PTCD3-215ENST00000484203 TONSLQ96HA7 1378 aa8.73□□□□□ -1.01
PTCD3-215ENST00000484203 SLIT2O94813 1529 aa8.72□□□□□ -1.01
PTCD3-215ENST00000484203 FAM83GA6ND36 823 aa8.72□□□□□ -1.01
PTCD3-215ENST00000484203 ONECUT3O60422 494 aaPredicted RBP8.72□□□□□ -1.01
PTCD3-215ENST00000484203 PADI6Q6TGC4 694 aa8.72□□□□□ -1.01
PTCD3-215ENST00000484203 NLRP13Q86W25 1043 aa8.72□□□□□ -1.01
PTCD3-215ENST00000484203 CABLES1Q8TDN4 633 aa8.72□□□□□ -1.01
PTCD3-215ENST00000484203 ZC3H15Q8WU90 426 aaKnown RBP8.72□□□□□ -1.01
PTCD3-215ENST00000484203 PRDM11Q9NQV5 511 aa8.72□□□□□ -1.01
PTCD3-215ENST00000484203 TSKSQ9UJT2 592 aa8.72□□□□□ -1.01
PTCD3-215ENST00000484203 ACEP12821 1306 aa8.72□□□□□ -1.01
PTCD3-215ENST00000484203 RGS12O14924 1447 aa8.71□□□□□ -1.01
PTCD3-215ENST00000484203 ATP7BP35670 1465 aa8.71□□□□□ -1.01
PTCD3-215ENST00000484203 FECHP22830 423 aa8.71□□□□□ -1.02
PTCD3-215ENST00000484203 PACS2Q86VP3 889 aa8.71□□□□□ -1.02
PTCD3-215ENST00000484203 ABTB2Q8N961 1025 aa8.71□□□□□ -1.02
PTCD3-215ENST00000484203 KIAA1468Q9P260 1216 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 137.7 ms