RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SRPK2P78362 688 aaKnown RBP6.58□□□□□ -1.36
VPS41-212ENST00000482217 MRPL14Q6P1L8 145 aaKnown RBP6.58□□□□□ -1.36
VPS41-212ENST00000482217 TRIM46Q7Z4K8 759 aa6.58□□□□□ -1.36
VPS41-212ENST00000482217 PLPP7Q8NBV4 271 aa6.58□□□□□ -1.36
VPS41-212ENST00000482217 USP17L3A6NCW0 530 aa6.57□□□□□ -1.36
VPS41-212ENST00000482217 USP17L4A6NCW7 530 aa6.57□□□□□ -1.36
VPS41-212ENST00000482217 BMP1P13497 986 aa6.57□□□□□ -1.36
VPS41-212ENST00000482217 INTS6LQ5JSJ4 861 aaKnown RBP6.57□□□□□ -1.36
VPS41-212ENST00000482217 PPP1R26Q5T8A7 1209 aaPredicted RBP6.57□□□□□ -1.36
VPS41-212ENST00000482217 USP17L2Q6R6M4 530 aa6.57□□□□□ -1.36
VPS41-212ENST00000482217 USP17L1Q7RTZ2 530 aa6.57□□□□□ -1.36
VPS41-212ENST00000482217 MEIOBQ8N635 442 aa6.57□□□□□ -1.36
VPS41-212ENST00000482217 ZFAND3Q9H8U3 227 aa6.57□□□□□ -1.36
VPS41-212ENST00000482217 CCDC9Q9Y3X0 531 aaKnown RBP6.57□□□□□ -1.36
VPS41-212ENST00000482217 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.56□□□□□ -1.36
VPS41-212ENST00000482217 GIGYF1O75420 1035 aaPredicted RBP6.56□□□□□ -1.36
VPS41-212ENST00000482217 VRTNQ9H8Y1 702 aa6.56□□□□□ -1.36
VPS41-212ENST00000482217 PDE4CQ08493 712 aa6.55□□□□□ -1.36
VPS41-212ENST00000482217 EML3Q32P44 896 aa6.55□□□□□ -1.36
VPS41-212ENST00000482217 Q6ZVU0 165 aa6.55□□□□□ -1.36
VPS41-212ENST00000482217 ZNF775Q96BV0 537 aaPredicted RBP6.55□□□□□ -1.36
VPS41-212ENST00000482217 ZFP42Q96MM3 310 aa6.55□□□□□ -1.36
VPS41-212ENST00000482217 TSEN34Q9BSV6 310 aaKnown RBP6.55□□□□□ -1.36
VPS41-212ENST00000482217 DOLKQ9UPQ8 538 aa6.55□□□□□ -1.36
VPS41-212ENST00000482217 SHROOM4Q9ULL8 1493 aa6.54□□□□□ -1.36
VPS41-212ENST00000482217 ATP5J2-PTCD1G3V325 749 aa6.54□□□□□ -1.36
VPS41-212ENST00000482217 ATG7O95352 703 aa6.54□□□□□ -1.36
VPS41-212ENST00000482217 SNRPBP14678 240 aaKnown RBP6.54□□□□□ -1.36
VPS41-212ENST00000482217 NCOA4Q13772 614 aa6.54□□□□□ -1.36
VPS41-212ENST00000482217 KANK4Q5T7N3 995 aaPredicted RBP6.54□□□□□ -1.36
VPS41-212ENST00000482217 LINC00528Q8N1L1 170 aa6.54□□□□□ -1.36
VPS41-212ENST00000482217 SIRT1Q96EB6 747 aa6.54□□□□□ -1.36
VPS41-212ENST00000482217 CCDC85AQ96PX6 553 aaPredicted RBP6.54□□□□□ -1.36
VPS41-212ENST00000482217 TRIM50Q86XT4 487 aa6.53□□□□□ -1.36
VPS41-212ENST00000482217 DEPDC4Q8N2C3 294 aa6.53□□□□□ -1.36
VPS41-212ENST00000482217 PURBQ96QR8 312 aaKnown RBP6.53□□□□□ -1.36
VPS41-212ENST00000482217 CHMP4AQ9BY43 222 aa6.53□□□□□ -1.36
VPS41-212ENST00000482217 MKRN1Q9UHC7 482 aaKnown RBP6.53□□□□□ -1.36
VPS41-212ENST00000482217 BMP2P12643 396 aa6.52□□□□□ -1.37
VPS41-212ENST00000482217 USP4Q13107 963 aa6.52□□□□□ -1.37
VPS41-212ENST00000482217 ELOAQ14241 798 aaKnown RBP6.52□□□□□ -1.37
VPS41-212ENST00000482217 TSGA10IPQ3SY00 556 aa6.52□□□□□ -1.37
VPS41-212ENST00000482217 NPAS3Q8IXF0 933 aa6.52□□□□□ -1.37
VPS41-212ENST00000482217 RETREG2Q8NC44 543 aa6.52□□□□□ -1.37
VPS41-212ENST00000482217 NOD1Q9Y239 953 aa6.52□□□□□ -1.37
VPS41-212ENST00000482217 FAM196BA6NMK8 535 aa6.51□□□□□ -1.37
VPS41-212ENST00000482217 ERVH48-1M5A8F1 160 aa6.51□□□□□ -1.37
VPS41-212ENST00000482217 CSB-PGBD3P0DP91 1061 aa6.51□□□□□ -1.37
VPS41-212ENST00000482217 PDIA4P13667 645 aaKnown RBP6.51□□□□□ -1.37
VPS41-212ENST00000482217 ATP1A2P50993 1020 aa6.51□□□□□ -1.37
VPS41-212ENST00000482217 USTQ9Y2C2 406 aa6.51□□□□□ -1.37
VPS41-212ENST00000482217 PCDHB11Q9Y5F2 797 aa6.51□□□□□ -1.37
VPS41-212ENST00000482217 CDCA8Q53HL2 280 aa6.5□□□□□ -1.37
VPS41-212ENST00000482217 OXLD1Q5BKU9 147 aa6.5□□□□□ -1.37
VPS41-212ENST00000482217 C6orf118Q5T5N4 469 aa6.5□□□□□ -1.37
VPS41-212ENST00000482217 LARP1Q6PKG0 1096 aaKnown RBP6.5□□□□□ -1.37
VPS41-212ENST00000482217 ZNF784Q8NCA9 323 aaPredicted RBP6.5□□□□□ -1.37
VPS41-212ENST00000482217 TRAIPQ9BWF2 469 aa6.5□□□□□ -1.37
VPS41-212ENST00000482217 CDCA7Q9BWT1 371 aaPredicted RBP6.5□□□□□ -1.37
VPS41-212ENST00000482217 USP17L15C9J2P7 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L10C9JJH3 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L13C9JLJ4 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L12C9JPN9 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L11C9JVI0 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L21D6R901 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L18D6R9N7 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L22D6RA61 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L17D6RBQ6 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L19D6RCP7 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L20D6RJB6 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 SPINT1O43278 529 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 MAN1A2O60476 641 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 MYCP01106 439 aaPredicted RBP6.49□□□□□ -1.37
VPS41-212ENST00000482217 RASA1P20936 1047 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 RAB15P59190 212 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 USP17L24Q0WX57 530 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 TREML4Q6UXN2 200 aa6.49□□□□□ -1.37
VPS41-212ENST00000482217 SOS2Q07890 1332 aaPredicted RBP6.49□□□□□ -1.37
VPS41-212ENST00000482217 TERTO14746 1132 aaKnown RBP6.48□□□□□ -1.37
VPS41-212ENST00000482217 LILRA1O75019 489 aa6.48□□□□□ -1.37
VPS41-212ENST00000482217 ADH1AP07327 375 aa6.48□□□□□ -1.37
VPS41-212ENST00000482217 CDK11BP21127 795 aaKnown RBP6.48□□□□□ -1.37
VPS41-212ENST00000482217 ERVK-9P63128 1117 aa6.48□□□□□ -1.37
VPS41-212ENST00000482217 CBLBQ13191 982 aa6.48□□□□□ -1.37
VPS41-212ENST00000482217 PTK7Q13308 1070 aa6.48□□□□□ -1.37
VPS41-212ENST00000482217 CRTC2Q53ET0 693 aaPredicted RBP6.48□□□□□ -1.37
VPS41-212ENST00000482217 LARGE2Q8N3Y3 721 aa6.48□□□□□ -1.37
VPS41-212ENST00000482217 OGFOD1Q8N543 542 aa6.48□□□□□ -1.37
VPS41-212ENST00000482217 TMPRSS4Q9NRS4 437 aa6.48□□□□□ -1.37
VPS41-212ENST00000482217 DNAAF2Q9NVR5 837 aaKnown RBP6.48□□□□□ -1.37
VPS41-212ENST00000482217 NXF1Q9UBU9 619 aaKnown RBP6.48□□□□□ -1.37
VPS41-212ENST00000482217 CDK11AQ9UQ88 783 aaPredicted RBP6.48□□□□□ -1.37
VPS41-212ENST00000482217 ZBTB7CA1YPR0 619 aa6.47□□□□□ -1.37
VPS41-212ENST00000482217 TTLL8A6PVC2 850 aa6.47□□□□□ -1.37
VPS41-212ENST00000482217 WFS1O76024 890 aa6.47□□□□□ -1.37
VPS41-212ENST00000482217 GTF2IP78347 998 aa6.47□□□□□ -1.37
VPS41-212ENST00000482217 CLDN10P78369 228 aa6.47□□□□□ -1.37
VPS41-212ENST00000482217 CC2D2BQ6DHV5 1058 aa6.47□□□□□ -1.37
VPS41-212ENST00000482217 SIX5Q8N196 739 aa6.47□□□□□ -1.37
VPS41-212ENST00000482217 SLC16A10Q8TF71 515 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms