RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-223ENST00000480525 MRC1P22897 1456 aa6.85□□□□□ -1.31
HDAC6-223ENST00000480525 DOT1LQ8TEK3 1739 aa6.85□□□□□ -1.31
HDAC6-223ENST00000480525 EXOC5O00471 708 aa6.85□□□□□ -1.31
HDAC6-223ENST00000480525 DIAPH1O60610 1272 aaKnown RBP6.85□□□□□ -1.31
HDAC6-223ENST00000480525 CSB-PGBD3P0DP91 1061 aa6.85□□□□□ -1.31
HDAC6-223ENST00000480525 FAM98CQ17RN3 349 aaKnown RBP6.85□□□□□ -1.31
HDAC6-223ENST00000480525 ILDR2Q71H61 639 aa6.85□□□□□ -1.31
HDAC6-223ENST00000480525 RAPGEF4Q8WZA2 1011 aa6.85□□□□□ -1.31
HDAC6-223ENST00000480525 EYA1Q99502 592 aa6.85□□□□□ -1.31
HDAC6-223ENST00000480525 PNNQ9H307 717 aaKnown RBP6.85□□□□□ -1.31
HDAC6-223ENST00000480525 NLRP2Q9NX02 1062 aa6.85□□□□□ -1.31
HDAC6-223ENST00000480525 BTAF1O14981 1849 aa6.85□□□□□ -1.31
HDAC6-223ENST00000480525 SIPA1L3O60292 1781 aaPredicted RBP6.85□□□□□ -1.31
HDAC6-223ENST00000480525 PLSCR1O15162 318 aa6.84□□□□□ -1.31
HDAC6-223ENST00000480525 FCHSD2O94868 740 aa6.84□□□□□ -1.31
HDAC6-223ENST00000480525 HSP90AB1P08238 724 aaKnown RBP6.84□□□□□ -1.31
HDAC6-223ENST00000480525 TATP17735 454 aaPredicted RBP6.84□□□□□ -1.31
HDAC6-223ENST00000480525 PDE3BQ13370 1112 aa6.84□□□□□ -1.31
HDAC6-223ENST00000480525 SPG7Q9UQ90 795 aa6.84□□□□□ -1.31
HDAC6-223ENST00000480525 NUDCQ9Y266 331 aa6.84□□□□□ -1.31
HDAC6-223ENST00000480525 CCDC9Q9Y3X0 531 aaKnown RBP6.84□□□□□ -1.31
HDAC6-223ENST00000480525 TOGARAM1Q9Y4F4 1720 aa6.84□□□□□ -1.31
HDAC6-223ENST00000480525 SOX12O15370 315 aa6.83□□□□□ -1.32
HDAC6-223ENST00000480525 DDX10Q13206 875 aaKnown RBP6.83□□□□□ -1.32
HDAC6-223ENST00000480525 CC2D1BQ5T0F9 858 aaKnown RBP6.83□□□□□ -1.32
HDAC6-223ENST00000480525 ZCRB1Q8TBF4 217 aaKnown RBP6.83□□□□□ -1.32
HDAC6-223ENST00000480525 DLG5Q8TDM6 1919 aa6.83□□□□□ -1.32
HDAC6-223ENST00000480525 PAPPAQ13219 1627 aa6.83□□□□□ -1.32
HDAC6-223ENST00000480525 UBR2Q8IWV8 1755 aa6.82□□□□□ -1.32
HDAC6-223ENST00000480525 FBLN1P23142 703 aa6.82□□□□□ -1.32
HDAC6-223ENST00000480525 NGEFQ8N5V2 710 aa6.82□□□□□ -1.32
HDAC6-223ENST00000480525 UPF1Q92900 1129 aaKnown RBP eCLIP6.82□□□□□ -1.32
HDAC6-223ENST00000480525 BCL11BQ9C0K0 894 aaPredicted RBP6.82□□□□□ -1.32
HDAC6-223ENST00000480525 TAF1LQ8IZX4 1826 aa6.82□□□□□ -1.32
HDAC6-223ENST00000480525 NUP188Q5SRE5 1749 aa6.81□□□□□ -1.32
HDAC6-223ENST00000480525 ERVV-2B6SEH9 535 aa6.81□□□□□ -1.32
HDAC6-223ENST00000480525 HTATSF1O43719 755 aaKnown RBP6.81□□□□□ -1.32
HDAC6-223ENST00000480525 PLEKHO1Q53GL0 409 aaPredicted RBP6.81□□□□□ -1.32
HDAC6-223ENST00000480525 IFNL2Q8IZJ0 200 aa6.81□□□□□ -1.32
HDAC6-223ENST00000480525 MARCH10Q8NA82 808 aaPredicted RBP6.81□□□□□ -1.32
HDAC6-223ENST00000480525 DCAF5Q96JK2 942 aa6.81□□□□□ -1.32
HDAC6-223ENST00000480525 CEMIPQ8WUJ3 1361 aa6.81□□□□□ -1.32
HDAC6-223ENST00000480525 PPM1GO15355 546 aaPredicted RBP6.8□□□□□ -1.32
HDAC6-223ENST00000480525 CYP27B1O15528 508 aa6.8□□□□□ -1.32
HDAC6-223ENST00000480525 COL24A1Q17RW2 1714 aa6.8□□□□□ -1.32
HDAC6-223ENST00000480525 AKAP4Q5JQC9 854 aa6.8□□□□□ -1.32
HDAC6-223ENST00000480525 GAS2L2Q8NHY3 880 aa6.8□□□□□ -1.32
HDAC6-223ENST00000480525 RSPH6AQ9H0K4 717 aa6.8□□□□□ -1.32
HDAC6-223ENST00000480525 USP35Q9P2H5 1018 aa6.8□□□□□ -1.32
HDAC6-223ENST00000480525 C5P01031 1676 aa6.8□□□□□ -1.32
HDAC6-223ENST00000480525 COL5A3P25940 1745 aaPredicted RBP6.79□□□□□ -1.32
HDAC6-223ENST00000480525 ZBTB7CA1YPR0 619 aa6.79□□□□□ -1.32
HDAC6-223ENST00000480525 PHKG2P15735 406 aa6.79□□□□□ -1.32
HDAC6-223ENST00000480525 TNNT2P45379 298 aaPredicted RBP6.79□□□□□ -1.32
HDAC6-223ENST00000480525 BAG6P46379 1132 aa6.79□□□□□ -1.32
HDAC6-223ENST00000480525 SLC27A3Q5K4L6 730 aa6.79□□□□□ -1.32
HDAC6-223ENST00000480525 SULT6B1Q6IMI4 303 aa6.79□□□□□ -1.32
HDAC6-223ENST00000480525 CACNA1FO60840 1977 aa6.78□□□□□ -1.32
HDAC6-223ENST00000480525 KDM6AO15550 1401 aaPredicted RBP6.78□□□□□ -1.32
HDAC6-223ENST00000480525 CCER2I3L3R5 266 aa6.78□□□□□ -1.32
HDAC6-223ENST00000480525 ANP32CO43423 234 aa6.78□□□□□ -1.32
HDAC6-223ENST00000480525 PLEKHG5O94827 1062 aa6.78□□□□□ -1.32
HDAC6-223ENST00000480525 SF3B2Q13435 895 aaKnown RBP6.78□□□□□ -1.32
HDAC6-223ENST00000480525 SMARCC1Q92922 1105 aaPredicted RBP6.78□□□□□ -1.32
HDAC6-223ENST00000480525 LTV1Q96GA3 475 aaPredicted RBP6.78□□□□□ -1.32
HDAC6-223ENST00000480525 PLEKHF1Q96S99 279 aa6.78□□□□□ -1.32
HDAC6-223ENST00000480525 BABAM1Q9NWV8 329 aa6.78□□□□□ -1.32
HDAC6-223ENST00000480525 MAP3K5Q99683 1374 aa6.78□□□□□ -1.32
HDAC6-223ENST00000480525 KDM3BQ7LBC6 1761 aa6.77□□□□□ -1.33
HDAC6-223ENST00000480525 A0A0G2JS52 829 aa6.77□□□□□ -1.33
HDAC6-223ENST00000480525 NEFMP07197 916 aa6.77□□□□□ -1.33
HDAC6-223ENST00000480525 MYT1Q01538 1121 aa6.77□□□□□ -1.33
HDAC6-223ENST00000480525 C1orf141Q5JVX7 400 aa6.77□□□□□ -1.33
HDAC6-223ENST00000480525 CAMKK2Q96RR4 588 aa6.77□□□□□ -1.33
HDAC6-223ENST00000480525 GNAT3A8MTJ3 354 aa6.76□□□□□ -1.33
HDAC6-223ENST00000480525 LMOD3Q0VAK6 560 aa6.76□□□□□ -1.33
HDAC6-223ENST00000480525 AEBP1Q8IUX7 1158 aa6.76□□□□□ -1.33
HDAC6-223ENST00000480525 LAMB4A4D0S4 1761 aa6.76□□□□□ -1.33
HDAC6-223ENST00000480525 UBR3Q6ZT12 1888 aa6.76□□□□□ -1.33
HDAC6-223ENST00000480525 LRP5O75197 1615 aa6.76□□□□□ -1.33
HDAC6-223ENST00000480525 CASZ1Q86V15 1759 aa6.75□□□□□ -1.33
HDAC6-223ENST00000480525 RGL2O15211 777 aa6.75□□□□□ -1.33
HDAC6-223ENST00000480525 U2AF1L5P0DN76 240 aaPredicted RBP6.75□□□□□ -1.33
HDAC6-223ENST00000480525 PRKAR2BP31323 418 aa6.75□□□□□ -1.33
HDAC6-223ENST00000480525 U2AF1Q01081 240 aaKnown RBP eCLIP6.75□□□□□ -1.33
HDAC6-223ENST00000480525 CCDC27Q2M243 656 aa6.75□□□□□ -1.33
HDAC6-223ENST00000480525 ZNF530Q6P9A1 599 aaPredicted RBP6.75□□□□□ -1.33
HDAC6-223ENST00000480525 VSIG10Q8N0Z9 540 aa6.75□□□□□ -1.33
HDAC6-223ENST00000480525 USHBP1Q8N6Y0 703 aa6.75□□□□□ -1.33
HDAC6-223ENST00000480525 PNISRQ8TF01 805 aaKnown RBP6.75□□□□□ -1.33
HDAC6-223ENST00000480525 C4BP0C0L5 1744 aa6.74□□□□□ -1.33
HDAC6-223ENST00000480525 TJP1Q07157 1748 aa6.74□□□□□ -1.33
HDAC6-223ENST00000480525 U2SURPO15042 1029 aaKnown RBP6.74□□□□□ -1.33
HDAC6-223ENST00000480525 WDR43Q15061 677 aaKnown RBP eCLIP6.74□□□□□ -1.33
HDAC6-223ENST00000480525 NFE2L2Q16236 605 aa6.74□□□□□ -1.33
HDAC6-223ENST00000480525 MTHFSDQ2M296 383 aaKnown RBP6.74□□□□□ -1.33
HDAC6-223ENST00000480525 RUNDC1Q96C34 613 aa6.74□□□□□ -1.33
HDAC6-223ENST00000480525 SLC52A2Q9HAB3 445 aa6.74□□□□□ -1.33
HDAC6-223ENST00000480525 TMOD3Q9NYL9 352 aa6.74□□□□□ -1.33
HDAC6-223ENST00000480525 KCPQ6ZWJ8 1503 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms